More than 300 homologs were found in PanDaTox collection
for query gene Sde_0523 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007912  Sde_0523  response regulator receiver domain-containing protein  100 
 
 
309 aa  642    Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  38.32 
 
 
243 aa  87.8  2e-16  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_013889  TK90_2400  response regulator receiver protein  35.16 
 
 
135 aa  87.4  2e-16  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.726464 
 
 
-
 
NC_008340  Mlg_0355  response regulator receiver protein  29.79 
 
 
161 aa  87.8  2e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.384709  normal  0.97064 
 
 
-
 
NC_007484  Noc_0131  response regulator receiver  33.9 
 
 
132 aa  87.4  3e-16  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1242  response regulator receiver protein  32.76 
 
 
138 aa  85.9  7e-16  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.390656 
 
 
-
 
NC_011992  Dtpsy_2901  response regulator receiver protein  35.59 
 
 
130 aa  85.9  8e-16  Acidovorax ebreus TPSY  Bacteria  normal  0.191122  n/a   
 
 
-
 
NC_008782  Ajs_3578  response regulator receiver protein  35.59 
 
 
130 aa  85.5  9e-16  Acidovorax sp. JS42  Bacteria  normal  0.677729  normal  0.0425656 
 
 
-
 
NC_003295  RSc0668  twitching motility two-component response regulator transcription regulator protein  35.9 
 
 
179 aa  85.1  0.000000000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4207  two component transcriptional regulator, winged helix family  35.09 
 
 
247 aa  85.5  0.000000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013205  Aaci_2268  two component transcriptional regulator, winged helix family  35.78 
 
 
221 aa  84.3  0.000000000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2942  two component transcriptional regulator, winged helix family  35.65 
 
 
234 aa  84.7  0.000000000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008752  Aave_0901  response regulator receiver protein  34.75 
 
 
136 aa  84.3  0.000000000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.850584 
 
 
-
 
NC_011901  Tgr7_2904  response regulator receiver protein  32.76 
 
 
137 aa  83.6  0.000000000000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1572  response regulator receiver protein  35.65 
 
 
132 aa  83.6  0.000000000000004  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.277281 
 
 
-
 
NC_010577  XfasM23_0893  response regulator receiver protein  33.05 
 
 
138 aa  83.2  0.000000000000005  Xylella fastidiosa M23  Bacteria  normal  0.605635  n/a   
 
 
-
 
NC_010513  Xfasm12_1017  response regulator receiver protein  33.05 
 
 
138 aa  83.2  0.000000000000005  Xylella fastidiosa M12  Bacteria  normal  0.88924  n/a   
 
 
-
 
NC_007404  Tbd_2552  response regulator receiver domain-containing protein  30.89 
 
 
130 aa  83.2  0.000000000000006  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0581  winged helix family two component transcriptional regulator  33.33 
 
 
242 aa  82.8  0.000000000000007  'Nostoc azollae' 0708  Bacteria  normal  0.296955  n/a   
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  34.78 
 
 
234 aa  82.8  0.000000000000007  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_009524  PsycPRwf_2159  response regulator receiver protein  33.62 
 
 
129 aa  82.8  0.000000000000007  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3021  response regulator receiver protein  34.45 
 
 
144 aa  82.4  0.000000000000008  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.381292  normal 
 
 
-
 
NC_009656  PSPA7_0508  twitching motility protein PilG  33.62 
 
 
135 aa  82.4  0.000000000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_05320  twitching motility protein PilG  33.62 
 
 
135 aa  82.4  0.000000000000009  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0403  response regulator receiver protein  33.62 
 
 
135 aa  82  0.00000000000001  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1878  two component transcriptional regulator  33.33 
 
 
242 aa  82.4  0.00000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.559477 
 
 
-
 
NC_011884  Cyan7425_1115  two component transcriptional regulator, winged helix family  33.33 
 
 
243 aa  82  0.00000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.0950226  normal 
 
 
-
 
NC_013595  Sros_6397  response regulator receiver protein  37.61 
 
 
237 aa  82  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.680662  normal  0.0804167 
 
 
-
 
NC_011071  Smal_3089  response regulator receiver protein  31.36 
 
 
133 aa  80.9  0.00000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.22915 
 
 
-
 
NC_013093  Amir_6310  two component transcriptional regulator, winged helix family  36 
 
 
261 aa  80.9  0.00000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.534044  n/a   
 
 
-
 
NC_007912  Sde_3634  response regulator receiver domain-containing protein  32.76 
 
 
131 aa  81.3  0.00000000000002  Saccharophagus degradans 2-40  Bacteria  normal  0.185946  normal 
 
 
-
 
NC_008740  Maqu_3767  response regulator receiver protein  31.9 
 
 
130 aa  81.6  0.00000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.401563  n/a   
 
 
-
 
NC_010524  Lcho_0734  response regulator receiver protein  33.61 
 
 
127 aa  80.9  0.00000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012856  Rpic12D_0560  response regulator receiver protein  34.48 
 
 
165 aa  80.5  0.00000000000003  Ralstonia pickettii 12D  Bacteria  normal  0.595412  normal 
 
 
-
 
NC_010322  PputGB1_5042  response regulator receiver protein  31.67 
 
 
133 aa  80.5  0.00000000000003  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2455  response regulator receiver modulated metal dependent phosphohydrolase  37.07 
 
 
376 aa  80.5  0.00000000000003  Magnetococcus sp. MC-1  Bacteria  normal  0.46136  normal  0.292815 
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  36.7 
 
 
227 aa  80.5  0.00000000000003  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_010682  Rpic_0612  response regulator receiver protein  34.48 
 
 
152 aa  80.1  0.00000000000004  Ralstonia pickettii 12J  Bacteria  normal  0.296044  normal 
 
 
-
 
NC_012560  Avin_03180  type IV pili response regulator, PilG  32.48 
 
 
135 aa  79.7  0.00000000000005  Azotobacter vinelandii DJ  Bacteria  normal  0.392248  n/a   
 
 
-
 
NC_008578  Acel_0627  response regulator receiver protein  36.45 
 
 
163 aa  79.7  0.00000000000005  Acidothermus cellulolyticus 11B  Bacteria  normal  0.143116  hitchhiker  0.00307044 
 
 
-
 
NC_002947  PP_4992  response regulator receiver protein  31.67 
 
 
133 aa  79.3  0.00000000000007  Pseudomonas putida KT2440  Bacteria  normal  0.162705  normal 
 
 
-
 
NC_007333  Tfu_2496  response regulator receiver  37.84 
 
 
225 aa  79.3  0.00000000000007  Thermobifida fusca YX  Bacteria  normal  0.491467  n/a   
 
 
-
 
NC_009512  Pput_4866  response regulator receiver protein  31.67 
 
 
133 aa  79.3  0.00000000000007  Pseudomonas putida F1  Bacteria  normal  0.638507  normal  0.0288736 
 
 
-
 
NC_008825  Mpe_A3190  twitching motility, CheY-like protein  31.58 
 
 
141 aa  79.3  0.00000000000007  Methylibium petroleiphilum PM1  Bacteria  normal  0.510228  normal  0.242476 
 
 
-
 
NC_013161  Cyan8802_2353  two component transcriptional regulator, winged helix family  32.46 
 
 
243 aa  79.3  0.00000000000007  Cyanothece sp. PCC 8802  Bacteria  normal  0.0794558  normal 
 
 
-
 
NC_011726  PCC8801_2302  two component transcriptional regulator, winged helix family  32.46 
 
 
243 aa  79.3  0.00000000000007  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_1180  hybrid sensory histidine kinase BarA  34.75 
 
 
929 aa  79.3  0.00000000000008  Shewanella pealeana ATCC 700345  Bacteria  normal  0.175711  n/a   
 
 
-
 
NC_009674  Bcer98_1200  two component transcriptional regulator  34.26 
 
 
238 aa  79  0.00000000000009  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0439  two component transcriptional regulator  33.64 
 
 
225 aa  79  0.00000000000009  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000223011  n/a   
 
 
-
 
NC_010814  Glov_3569  two component transcriptional regulator, winged helix family  36.04 
 
 
235 aa  79  0.00000000000009  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2623  response regulator receiver  33.06 
 
 
160 aa  79  0.00000000000009  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3745  two component transcriptional regulator, winged helix family  38.18 
 
 
225 aa  79  0.00000000000009  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.5489  normal 
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  33.33 
 
 
227 aa  79  0.00000000000009  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0239565 
 
 
-
 
NC_008639  Cpha266_0880  two component transcriptional regulator  34.58 
 
 
236 aa  79  0.00000000000009  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3971  response regulator receiver protein  31.4 
 
 
145 aa  78.6  0.0000000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0152715 
 
 
-
 
NC_011138  MADE_00535  Transcriptional regulatory protein CpxR  37.04 
 
 
247 aa  78.6  0.0000000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.774728  n/a   
 
 
-
 
NC_013947  Snas_1849  two component transcriptional regulator, winged helix family  40 
 
 
229 aa  78.6  0.0000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_1954  two component transcriptional regulator  34.91 
 
 
229 aa  79  0.0000000000001  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000155813  n/a   
 
 
-
 
NC_013501  Rmar_1501  response regulator receiver protein  32.79 
 
 
132 aa  78.6  0.0000000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  0.153095  n/a   
 
 
-
 
NC_011662  Tmz1t_3688  response regulator receiver protein  31.09 
 
 
133 aa  78.6  0.0000000000001  Thauera sp. MZ1T  Bacteria  normal  0.478813  n/a   
 
 
-
 
NC_007413  Ava_0508  response regulator receiver domain-containing protein  34.51 
 
 
121 aa  79  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.481314  normal 
 
 
-
 
NC_007948  Bpro_1136  response regulator receiver domain-containing protein  34.86 
 
 
132 aa  78.6  0.0000000000001  Polaromonas sp. JS666  Bacteria  normal  normal  0.638067 
 
 
-
 
NC_008312  Tery_0954  two component transcriptional regulator  33.04 
 
 
243 aa  78.6  0.0000000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0817018 
 
 
-
 
NC_010717  PXO_01602  type IV pilus response regulator PilG  33.64 
 
 
117 aa  78.2  0.0000000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.388184  n/a   
 
 
-
 
NC_013510  Tcur_4043  two component transcriptional regulator, winged helix family  36.94 
 
 
225 aa  78.2  0.0000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  0.728877  n/a   
 
 
-
 
NC_012791  Vapar_4626  response regulator receiver protein  33.04 
 
 
132 aa  78.2  0.0000000000002  Variovorax paradoxus S110  Bacteria  normal  0.664548  n/a   
 
 
-
 
NC_009092  Shew_1200  hybrid sensory histidine kinase BarA  32.2 
 
 
933 aa  77.8  0.0000000000002  Shewanella loihica PV-4  Bacteria  normal  0.930165  normal 
 
 
-
 
NC_011772  BCG9842_B2021  regulatory protein VanR  36.45 
 
 
228 aa  77.8  0.0000000000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  33.33 
 
 
440 aa  78.2  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_008781  Pnap_3354  response regulator receiver protein  34.86 
 
 
147 aa  77.8  0.0000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.878811  normal 
 
 
-
 
NC_012669  Bcav_1240  two component transcriptional regulator, winged helix family  39.45 
 
 
227 aa  77.8  0.0000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_002939  GSU2219  response regulator  36.79 
 
 
123 aa  77.4  0.0000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3000  response regulator receiver protein  33.33 
 
 
124 aa  77.4  0.0000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_2313  two component transcriptional regulator  36.45 
 
 
228 aa  77.4  0.0000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0313786  n/a   
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  35.4 
 
 
231 aa  77  0.0000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  33.91 
 
 
566 aa  77  0.0000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_007492  Pfl01_5308  response regulator receiver domain-containing protein  31.9 
 
 
134 aa  77.4  0.0000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0630269  normal  0.22086 
 
 
-
 
NC_007517  Gmet_1707  PAS/PAC sensor hybrid histidine kinase  32.52 
 
 
1313 aa  77.4  0.0000000000003  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  30 
 
 
231 aa  77.4  0.0000000000003  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  37.61 
 
 
246 aa  77.4  0.0000000000003  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  38.37 
 
 
437 aa  76.6  0.0000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4952  putative two-component response regulator  34.86 
 
 
227 aa  76.6  0.0000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_30940  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  37.84 
 
 
225 aa  76.6  0.0000000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_1371  response regulator receiver domain-containing protein  33.04 
 
 
132 aa  76.6  0.0000000000004  Rhodoferax ferrireducens T118  Bacteria  normal  0.019268  n/a   
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  33.62 
 
 
231 aa  76.6  0.0000000000005  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_3689  response regulator receiver protein  38.05 
 
 
121 aa  76.6  0.0000000000005  Thauera sp. MZ1T  Bacteria  normal  0.443278  n/a   
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  33.62 
 
 
231 aa  76.6  0.0000000000005  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1955  two component transcriptional regulator, winged helix family  35.51 
 
 
236 aa  76.6  0.0000000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.295041  normal 
 
 
-
 
NC_007954  Sden_1191  hybrid sensory histidine kinase BarA  30.89 
 
 
950 aa  76.6  0.0000000000005  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000146059  n/a   
 
 
-
 
NC_011898  Ccel_0246  two component transcriptional regulator, winged helix family  31.48 
 
 
225 aa  76.6  0.0000000000005  Clostridium cellulolyticum H10  Bacteria  normal  0.0272164  n/a   
 
 
-
 
NC_009438  Sputcn32_2767  hybrid sensory histidine kinase BarA  34.11 
 
 
933 aa  76.3  0.0000000000006  Shewanella putrefaciens CN-32  Bacteria  normal  0.294821  n/a   
 
 
-
 
NC_011725  BCB4264_A3169  regulatory protein VanR  33.64 
 
 
229 aa  76.3  0.0000000000006  Bacillus cereus B4264  Bacteria  normal  0.16404  n/a   
 
 
-
 
NC_010506  Swoo_3355  hybrid sensory histidine kinase BarA  31.2 
 
 
937 aa  76.3  0.0000000000006  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0869798  hitchhiker  0.00259338 
 
 
-
 
NC_009831  Ssed_1285  hybrid sensory histidine kinase BarA  30.89 
 
 
937 aa  76.3  0.0000000000006  Shewanella sediminis HAW-EB3  Bacteria  normal  unclonable  0.000000000242189 
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  30 
 
 
231 aa  76.3  0.0000000000006  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_008312  Tery_3248  response regulator receiver protein  34.78 
 
 
121 aa  76.3  0.0000000000006  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.500247 
 
 
-
 
NC_010501  PputW619_0472  response regulator receiver protein  30.83 
 
 
133 aa  76.3  0.0000000000006  Pseudomonas putida W619  Bacteria  normal  0.418097  normal 
 
 
-
 
NC_009997  Sbal195_3291  hybrid sensory histidine kinase BarA  34.11 
 
 
933 aa  76.3  0.0000000000006  Shewanella baltica OS195  Bacteria  normal  0.59315  hitchhiker  0.0011455 
 
 
-
 
NC_010524  Lcho_2746  response regulator receiver protein  33.33 
 
 
120 aa  76.3  0.0000000000007  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00459198 
 
 
-
 
NC_010184  BcerKBAB4_1399  two component transcriptional regulator  32.41 
 
 
238 aa  75.9  0.0000000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.129694  n/a   
 
 
-
 
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