More than 300 homologs were found in PanDaTox collection
for query gene Pmen_0403 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_0403  response regulator receiver protein  100 
 
 
135 aa  277  4e-74  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0508  twitching motility protein PilG  94.07 
 
 
135 aa  263  5.999999999999999e-70  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_05320  twitching motility protein PilG  94.07 
 
 
135 aa  263  8e-70  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_03180  type IV pili response regulator, PilG  89.63 
 
 
135 aa  253  5e-67  Azotobacter vinelandii DJ  Bacteria  normal  0.392248  n/a   
 
 
-
 
NC_004578  PSPTO_5034  type IV pilus response regulator PilG  87.97 
 
 
136 aa  244  2e-64  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0488  response regulator receiver  87.97 
 
 
136 aa  244  2e-64  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5308  response regulator receiver domain-containing protein  87.5 
 
 
134 aa  233  7e-61  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0630269  normal  0.22086 
 
 
-
 
NC_007912  Sde_3634  response regulator receiver domain-containing protein  88.8 
 
 
131 aa  226  7e-59  Saccharophagus degradans 2-40  Bacteria  normal  0.185946  normal 
 
 
-
 
NC_008740  Maqu_3767  response regulator receiver protein  84.13 
 
 
130 aa  224  4e-58  Marinobacter aquaeolei VT8  Bacteria  normal  0.401563  n/a   
 
 
-
 
NC_011071  Smal_3089  response regulator receiver protein  82.35 
 
 
133 aa  212  9.999999999999999e-55  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.22915 
 
 
-
 
NC_010577  XfasM23_0893  response regulator receiver protein  81.51 
 
 
138 aa  211  2.9999999999999995e-54  Xylella fastidiosa M23  Bacteria  normal  0.605635  n/a   
 
 
-
 
NC_010513  Xfasm12_1017  response regulator receiver protein  81.51 
 
 
138 aa  211  2.9999999999999995e-54  Xylella fastidiosa M12  Bacteria  normal  0.88924  n/a   
 
 
-
 
NC_002947  PP_4992  response regulator receiver protein  75.94 
 
 
133 aa  209  1e-53  Pseudomonas putida KT2440  Bacteria  normal  0.162705  normal 
 
 
-
 
NC_009512  Pput_4866  response regulator receiver protein  75.94 
 
 
133 aa  209  1e-53  Pseudomonas putida F1  Bacteria  normal  0.638507  normal  0.0288736 
 
 
-
 
NC_008340  Mlg_0355  response regulator receiver protein  77.42 
 
 
161 aa  208  2e-53  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.384709  normal  0.97064 
 
 
-
 
NC_007969  Pcryo_2101  response regulator receiver domain-containing protein  79.03 
 
 
125 aa  206  6e-53  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5042  response regulator receiver protein  75.19 
 
 
133 aa  206  8e-53  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0472  response regulator receiver protein  75.19 
 
 
133 aa  205  2e-52  Pseudomonas putida W619  Bacteria  normal  0.418097  normal 
 
 
-
 
NC_007204  Psyc_1818  two component reponse regulator  78.23 
 
 
125 aa  205  2e-52  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2904  response regulator receiver protein  80.67 
 
 
137 aa  204  4e-52  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_2159  response regulator receiver protein  76.61 
 
 
129 aa  203  6e-52  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_0131  response regulator receiver  79.17 
 
 
132 aa  203  7e-52  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_01602  type IV pilus response regulator PilG  82.61 
 
 
117 aa  203  7e-52  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.388184  n/a   
 
 
-
 
NC_013889  TK90_2400  response regulator receiver protein  73.11 
 
 
135 aa  196  1.0000000000000001e-49  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.726464 
 
 
-
 
NC_007404  Tbd_2552  response regulator receiver domain-containing protein  69.75 
 
 
130 aa  186  1e-46  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3899  response regulator receiver  68.46 
 
 
136 aa  185  2e-46  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3688  response regulator receiver protein  72.03 
 
 
133 aa  185  2e-46  Thauera sp. MZ1T  Bacteria  normal  0.478813  n/a   
 
 
-
 
NC_007947  Mfla_1242  response regulator receiver protein  70.34 
 
 
138 aa  180  6e-45  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.390656 
 
 
-
 
NC_010524  Lcho_3971  response regulator receiver protein  66.67 
 
 
145 aa  173  8e-43  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0152715 
 
 
-
 
NC_008825  Mpe_A3190  twitching motility, CheY-like protein  65 
 
 
141 aa  169  7.999999999999999e-42  Methylibium petroleiphilum PM1  Bacteria  normal  0.510228  normal  0.242476 
 
 
-
 
NC_012791  Vapar_4626  response regulator receiver protein  62.3 
 
 
132 aa  166  1e-40  Variovorax paradoxus S110  Bacteria  normal  0.664548  n/a   
 
 
-
 
NC_008781  Pnap_3354  response regulator receiver protein  62.18 
 
 
147 aa  165  2e-40  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.878811  normal 
 
 
-
 
NC_007948  Bpro_1136  response regulator receiver domain-containing protein  61.48 
 
 
132 aa  164  4e-40  Polaromonas sp. JS666  Bacteria  normal  normal  0.638067 
 
 
-
 
NC_010682  Rpic_0612  response regulator receiver protein  60.83 
 
 
152 aa  164  5e-40  Ralstonia pickettii 12J  Bacteria  normal  0.296044  normal 
 
 
-
 
NC_012856  Rpic12D_0560  response regulator receiver protein  60.83 
 
 
165 aa  164  5e-40  Ralstonia pickettii 12D  Bacteria  normal  0.595412  normal 
 
 
-
 
NC_003295  RSc0668  twitching motility two-component response regulator transcription regulator protein  60.83 
 
 
179 aa  162  1.0000000000000001e-39  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0901  response regulator receiver protein  63.48 
 
 
136 aa  162  1.0000000000000001e-39  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.850584 
 
 
-
 
NC_008786  Veis_3021  response regulator receiver protein  64.04 
 
 
144 aa  162  1.0000000000000001e-39  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.381292  normal 
 
 
-
 
NC_011992  Dtpsy_2901  response regulator receiver protein  62.61 
 
 
130 aa  161  2.0000000000000002e-39  Acidovorax ebreus TPSY  Bacteria  normal  0.191122  n/a   
 
 
-
 
NC_008782  Ajs_3578  response regulator receiver protein  62.61 
 
 
130 aa  161  2.0000000000000002e-39  Acidovorax sp. JS42  Bacteria  normal  0.677729  normal  0.0425656 
 
 
-
 
NC_007908  Rfer_1371  response regulator receiver domain-containing protein  59.84 
 
 
132 aa  162  2.0000000000000002e-39  Rhodoferax ferrireducens T118  Bacteria  normal  0.019268  n/a   
 
 
-
 
NC_010002  Daci_1572  response regulator receiver protein  62.61 
 
 
132 aa  160  5.0000000000000005e-39  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.277281 
 
 
-
 
NC_007347  Reut_A2623  response regulator receiver  58.47 
 
 
160 aa  157  4e-38  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0669  response regulator receiver domain-containing protein  58.26 
 
 
167 aa  150  4e-36  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00304574  normal  0.832292 
 
 
-
 
NC_008312  Tery_3249  response regulator receiver protein  39.2 
 
 
405 aa  110  8.000000000000001e-24  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.517316 
 
 
-
 
NC_011729  PCC7424_0987  response regulator receiver protein  44.25 
 
 
414 aa  108  3e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.332272 
 
 
-
 
NC_008740  Maqu_3772  CheA signal transduction histidine kinase  41.59 
 
 
2539 aa  105  2e-22  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0058  response regulator receiver domain-containing protein  39.66 
 
 
347 aa  104  5e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  0.259686  normal  0.253815 
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  39.84 
 
 
246 aa  103  1e-21  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_008532  STER_1116  DNA-binding response regulator  42.06 
 
 
235 aa  102  1e-21  Streptococcus thermophilus LMD-9  Bacteria  normal  0.310768  n/a   
 
 
-
 
NC_011726  PCC8801_0723  response regulator receiver protein  39.09 
 
 
405 aa  102  2e-21  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_3248  response regulator receiver protein  42.98 
 
 
121 aa  102  2e-21  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.500247 
 
 
-
 
NC_011884  Cyan7425_3661  response regulator receiver protein  41.03 
 
 
120 aa  101  3e-21  Cyanothece sp. PCC 7425  Bacteria  normal  0.442071  normal 
 
 
-
 
NC_008463  PA14_05390  ChpA  39.66 
 
 
2476 aa  101  3e-21  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.812783  normal 
 
 
-
 
NC_009656  PSPA7_0513  response regulator  39.66 
 
 
2458 aa  101  3e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_0855  response regulator receiver domain-containing protein  38.14 
 
 
417 aa  101  4e-21  Synechococcus elongatus PCC 7942  Bacteria  normal  hitchhiker  0.00541919 
 
 
-
 
NC_013161  Cyan8802_0752  response regulator receiver protein  39.81 
 
 
405 aa  101  4e-21  Cyanothece sp. PCC 8802  Bacteria  normal  0.26894  normal 
 
 
-
 
NC_011729  PCC7424_4207  two component transcriptional regulator, winged helix family  40.65 
 
 
247 aa  101  4e-21  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_014248  Aazo_0413  response regulator receiver protein  37.5 
 
 
347 aa  100  7e-21  'Nostoc azollae' 0708  Bacteria  normal  0.827991  n/a   
 
 
-
 
NC_004116  SAG0719  DNA-binding response regulator  40.48 
 
 
236 aa  100  8e-21  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.0951718  n/a   
 
 
-
 
NC_007413  Ava_1878  two component transcriptional regulator  40.65 
 
 
242 aa  100  8e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.559477 
 
 
-
 
NC_008312  Tery_0954  two component transcriptional regulator  40.65 
 
 
243 aa  100  9e-21  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0817018 
 
 
-
 
NC_013161  Cyan8802_2353  two component transcriptional regulator, winged helix family  40.65 
 
 
243 aa  99.8  1e-20  Cyanothece sp. PCC 8802  Bacteria  normal  0.0794558  normal 
 
 
-
 
NC_011884  Cyan7425_1115  two component transcriptional regulator, winged helix family  39.84 
 
 
243 aa  99.4  1e-20  Cyanothece sp. PCC 7425  Bacteria  normal  0.0950226  normal 
 
 
-
 
NC_007005  Psyr_0492  response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt  37.8 
 
 
1992 aa  99.4  1e-20  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2302  two component transcriptional regulator, winged helix family  40.65 
 
 
243 aa  99.8  1e-20  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  40.17 
 
 
235 aa  99.8  1e-20  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_5030  sensor histidine kinase/response regulator  36.97 
 
 
1987 aa  99  2e-20  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_0581  winged helix family two component transcriptional regulator  39.84 
 
 
242 aa  98.6  2e-20  'Nostoc azollae' 0708  Bacteria  normal  0.296955  n/a   
 
 
-
 
NC_011884  Cyan7425_4742  response regulator receiver protein  37.27 
 
 
382 aa  99  2e-20  Cyanothece sp. PCC 7425  Bacteria  normal  0.333438  hitchhiker  0.00408649 
 
 
-
 
NC_009439  Pmen_0408  CheA signal transduction histidine kinase  39.29 
 
 
2423 aa  99  2e-20  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0359  CheA signal transduction histidine kinases  35.61 
 
 
1834 aa  98.6  2e-20  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.505566  normal  0.609353 
 
 
-
 
NC_011830  Dhaf_1740  two component transcriptional regulator, winged helix family  44.35 
 
 
225 aa  98.6  3e-20  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000204942  n/a   
 
 
-
 
NC_008527  LACR_0444  DNA-binding response regulator  43.59 
 
 
233 aa  98.6  3e-20  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1005  two component transcriptional regulator, winged helix family  37.5 
 
 
227 aa  97.8  4e-20  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000255449  n/a   
 
 
-
 
NC_011729  PCC7424_3000  response regulator receiver protein  39.47 
 
 
124 aa  98.2  4e-20  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_1102  response regulator receiver domain-containing protein  40.17 
 
 
457 aa  97.8  4e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0092  response regulator receiver protein  38.98 
 
 
120 aa  97.4  6e-20  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0126  CheA signal transduction histidine kinase  40.71 
 
 
1758 aa  97.4  6e-20  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1632  response regulator receiver  39.32 
 
 
123 aa  97.1  7e-20  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0509  response regulator receiver domain-containing protein  36 
 
 
412 aa  97.1  7e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  0.75217  normal 
 
 
-
 
NC_007604  Synpcc7942_1453  two component transcriptional regulator  39.02 
 
 
244 aa  97.1  8e-20  Synechococcus elongatus PCC 7942  Bacteria  normal  0.952418  normal  0.0249242 
 
 
-
 
NC_007777  Francci3_1155  two component transcriptional regulator  43.93 
 
 
235 aa  97.1  8e-20  Frankia sp. CcI3  Bacteria  normal  0.503115  normal 
 
 
-
 
NC_002947  PP_4988  CheA signal transduction histidine kinase  38.14 
 
 
1646 aa  96.3  1e-19  Pseudomonas putida KT2440  Bacteria  normal  0.4615  normal 
 
 
-
 
NC_011884  Cyan7425_1061  response regulator receiver protein  38.6 
 
 
427 aa  96.3  1e-19  Cyanothece sp. PCC 7425  Bacteria  normal  0.609626  hitchhiker  0.0000494803 
 
 
-
 
NC_011729  PCC7424_2999  response regulator receiver protein  39.45 
 
 
421 aa  96.3  1e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013510  Tcur_3942  response regulator receiver protein  37.61 
 
 
163 aa  96.3  1e-19  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_4862  CheA signal transduction histidine kinase  38.14 
 
 
1646 aa  96.3  1e-19  Pseudomonas putida F1  Bacteria  normal  decreased coverage  0.00418474 
 
 
-
 
NC_010322  PputGB1_5038  CheA signal transduction histidine kinase  38.46 
 
 
1647 aa  96.3  1e-19  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_2396  CheA signal transduction histidine kinase  35.29 
 
 
1832 aa  96.3  1e-19  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.412957 
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  38.4 
 
 
230 aa  95.5  2e-19  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  40 
 
 
234 aa  95.5  2e-19  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  41.03 
 
 
237 aa  95.9  2e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010002  Daci_1576  CheA signal transduction histidine kinase  38.26 
 
 
2137 aa  95.5  2e-19  Delftia acidovorans SPH-1  Bacteria  normal  0.167147  normal  0.557453 
 
 
-
 
NC_014158  Tpau_3286  two component transcriptional regulator, winged helix family  39.52 
 
 
228 aa  95.5  2e-19  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.167791  n/a   
 
 
-
 
NC_008528  OEOE_0105  DNA-binding response regulator  41.03 
 
 
237 aa  95.1  3e-19  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  38.79 
 
 
231 aa  95.1  3e-19  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_2318  two component transcriptional regulator  40.5 
 
 
225 aa  95.1  3e-19  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.642935  normal 
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  38.21 
 
 
236 aa  95.1  3e-19  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  38.4 
 
 
337 aa  94.7  3e-19  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
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