Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3355 |
Symbol | |
ID | 6117687 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4111948 |
End bp | 4114761 |
Gene Length | 2814 bp |
Protein Length | 937 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641634911 |
Product | hybrid sensory histidine kinase BarA |
Protein accession | YP_001761719 |
Protein GI | 170727693 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0869798 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00259338 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATAAAG CCGACAACAT GACCAAATAT AGCCTGAGAT CATGGGTGCT TGTATTGGCG TTAGCTCCAA CTATCCTCGT TGGGATCTTA TTAGGCAGCT ATTTTACCAT AAATCGTTTC TATGAACTCG AAGAAACACT CATTGAGCAG GGTGGAAATA TCATTGAGCC ACTCGCTATT GCCGCCGAGA TAGGTCTCGA GAAGCAAGAT TTTGAAACCA CTAAAAAATT GATCACAGCA GCCCAACTCA ACAAATCCTC TCTAGTTCAG TTTATTGCCA TTTTCGATAC TGAAAATCGC GTTATTGTCA CCTCTCACCA CTACAAAGAT CATGAGCTTA TGCGCTATGA TCAACCATTA AGCAGCCTGA TGAGGACAGA GCTTGAACAG GTAGGTGACA GCTTGATTCT GCGTAGCCCT ATCTTCTCAT CAGATCATGA ACTTAAACTG ACAAATTTCG GTGACAGAGA CTCCCAGCAA ATATCAGCCG CTAAGCTGGG TTATATTGCG ATACTGGTGA ATAAAGAAAA TTCACTTCTT GAGCAACATA GAGCTGCCGT TGCAGCCTTT ATAATTGTCC TGATCGGCGT GCAACTTAAT TTACTCTTTA CCTTCCGTCT GGTTAAAAAT GTGACCCAAC CTATTACGGA GATGGTGAGG GTCGTGGCAA AAATTCGTGA AGGTAAACTG GACACCCGGG TCGATGGAAA TCTTATTGGT GAGCTGGATC TGCTTAAACG CGGTATTAAT GCCATGGCAA GCTCGCTCTC TGAATACCAT GACGAGATGC AACAAAATAT CGATCAGGCC ACCTCAGATC TGAGGGAAAC ACTGGAACAG ATTGAGATCC AAAACGTCGA GCTGGATTTA GCGAAGAAAA GAGCCCTTGA GGCCAGCCGG ATAAAATCTG AGTTTTTAGC CAACATGTCC CACGAACTTA GAACCCCACT TAATGGTGTC ATCGGATTCG CCAAACAGCT ACTGAAAACG CCCCTGCATA CGAGTCAACA GGACTACATC AACACCATAG AGAAGAGTGC AACTAACCTT CTTGAGATAA TTAACGACAT CTTAGACTTC TCTAAATTGG AGGCAGGAAA GCTGGTATTA GAGAGCCTAC CTTTCGCCCT ACGCGAACTA GTTGGTGATA CAGTAACTAT CCTATCAAAC AGTGCCCGAG AGAAAGATAT TGAGCTCGTT ATCGACATAG ATCAATCAGT CCCCGAAGCC TTGTGCGGCG ATCCTATGCG AATTGGTCAG ATCCTAACAA ACTTAATAGG CAATGCTATC AAGTTCACCG ATAGCGGTAG TGTTCACTTA AGTCTTAAGC TCACTGATGG CAGCAAAGAT AAAGTAAACA TCAGGTGCGA GATAACAGAT ACAGGGATTG GTATAGACCC TCAGCAGCAG GAGATTCTTT TTCAAGCCTT TGGCCAAGCA GACTCCTCAA TTTCACGTCG CTTTGGCGGT ACTGGACTGG GTTTAATTAT CACTAAGCGT CTGGTTAACC GTATGGGTGG CCAGATAGGG TGTAACTCTA AAGCCAACGA AGGCTCAACG TTCTGGTTTA CCCTTCCATT AGAAACCAGC CAATACCCGG TAGGTCACTT CCTCACAACA GAGAAACTGC TCAACAAGTC GATGTTACTT ATCGAGCCAA GAGAGTTGTC TAACAAGACA CTACTCAAAC AGTTTCAATA CTGGGGGATG AAAACAACCA ATATTGGCTC AACGAGCCAA CTTGCAGAGT GCTCACTACC TGATTCCAAG AAATATGACT ATGCCGTCGT GAGCTGCAAA GCGCTCAACC CCGATAAGGA CACCACTGAA CAGCTAAAAT CCATTAAAGA CTTATCTCAA TTTGTCCTCT ACCTTGTGTG TACGAATGAG CAAGACACTC ACACCATATT TGATACCGTA GATAAAATAT TACCGGCTCC AATCAATGAA AAGGTTTTAG CTGAAATACT TATCGATCCA AAATCCGATA CAAGCAGTCC ACACCAATTA GAGGAACACG CCCAAGTTGA GCCTATAGCC AGAGAGAACC TCAACGTATT AGCGGTCGAT GATAACCCTG CAAACCTCAA ATTAATCGAT ACCCTACTAA AAGAGTTAGT GAGCCAAGTC ACAGTGGTAG ACAATGGTCA GGGGGCTGTG AATATCGCCC AAGAGCGCAG TTTCGATCTC ATCTTCATGG ATATTCAGAT GCCAGGTACA GATGGGATTA GTGCCACTAA GCAGATTAGA CAACACTCGC TTAACCGTAA CACACCGATC ATTGCGGTGA CCGCCCATGC GATTGCTGAA GAGCGGGAGA TGATCCAACA AAGCGGTATG GATGGTTATC TGCCTAAACC TATCGATGAA GCGGCGTTAA AGAGCGTGAT CAACCGCTGG AAAACGCGCC CTAAGTTTAC CCATTTCGAC CCCTTTACCC TTAACTGGGA GCTGTGCCTC ACACAAGCCA ATCAGAAGCC AGATTTGGCA CTGGATATGC TCAAGATGTT AGTGGCATCA CTGCCTGAAA CCACAGCTCA GATAAAACAG GCATTAGAGG AGTTTAATCA AGACTCTATG CTCGCCTCAG TGCATAAACT CCATGGCGCA TGCTGTTATT GTGGCGTACC TACCACACAA AAGCTTTGTC AGGAGATAGA ATCAAGTTTG AAACGCGGCT CGGCCGTTGC CGATGTCGAA CCTGAAATAC TAGAGTTACT TGACGAGCTA ACTAAGGTAG AATCAGCCGC AAATCAAGTG ATATCACAGT TATCAACGGA TGTAATAGAT GACAACCAAA CTAGGCTTCT TTAA
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Protein sequence | MNKADNMTKY SLRSWVLVLA LAPTILVGIL LGSYFTINRF YELEETLIEQ GGNIIEPLAI AAEIGLEKQD FETTKKLITA AQLNKSSLVQ FIAIFDTENR VIVTSHHYKD HELMRYDQPL SSLMRTELEQ VGDSLILRSP IFSSDHELKL TNFGDRDSQQ ISAAKLGYIA ILVNKENSLL EQHRAAVAAF IIVLIGVQLN LLFTFRLVKN VTQPITEMVR VVAKIREGKL DTRVDGNLIG ELDLLKRGIN AMASSLSEYH DEMQQNIDQA TSDLRETLEQ IEIQNVELDL AKKRALEASR IKSEFLANMS HELRTPLNGV IGFAKQLLKT PLHTSQQDYI NTIEKSATNL LEIINDILDF SKLEAGKLVL ESLPFALREL VGDTVTILSN SAREKDIELV IDIDQSVPEA LCGDPMRIGQ ILTNLIGNAI KFTDSGSVHL SLKLTDGSKD KVNIRCEITD TGIGIDPQQQ EILFQAFGQA DSSISRRFGG TGLGLIITKR LVNRMGGQIG CNSKANEGST FWFTLPLETS QYPVGHFLTT EKLLNKSMLL IEPRELSNKT LLKQFQYWGM KTTNIGSTSQ LAECSLPDSK KYDYAVVSCK ALNPDKDTTE QLKSIKDLSQ FVLYLVCTNE QDTHTIFDTV DKILPAPINE KVLAEILIDP KSDTSSPHQL EEHAQVEPIA RENLNVLAVD DNPANLKLID TLLKELVSQV TVVDNGQGAV NIAQERSFDL IFMDIQMPGT DGISATKQIR QHSLNRNTPI IAVTAHAIAE EREMIQQSGM DGYLPKPIDE AALKSVINRW KTRPKFTHFD PFTLNWELCL TQANQKPDLA LDMLKMLVAS LPETTAQIKQ ALEEFNQDSM LASVHKLHGA CCYCGVPTTQ KLCQEIESSL KRGSAVADVE PEILELLDEL TKVESAANQV ISQLSTDVID DNQTRLL
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