More than 300 homologs were found in PanDaTox collection
for query gene RPD_1045 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_0942  twin-arginine translocation pathway signal  91.65 
 
 
407 aa  778    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1045  twin-arginine translocation pathway signal  100 
 
 
407 aa  839    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.457214  normal 
 
 
-
 
NC_007953  Bxe_C1255  branched chain amino acid ABC transporter periplasmic ligand-binding protein  69.92 
 
 
415 aa  590  1e-167  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0484775 
 
 
-
 
NC_010625  Bphy_6254  putative urea/short-chain binding protein  52.62 
 
 
369 aa  412  1e-114  Burkholderia phymatum STM815  Bacteria  normal  0.172457  normal  0.370606 
 
 
-
 
NC_009485  BBta_4452  putative Leu/Ile/Val/Thr/Ala-binding protein  33.25 
 
 
412 aa  202  6e-51  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.133528 
 
 
-
 
NC_008740  Maqu_3867  extracellular ligand-binding receptor  31.92 
 
 
421 aa  184  2.0000000000000003e-45  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2418  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  33.14 
 
 
393 aa  180  4e-44  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2205  extracellular ligand-binding receptor  31.94 
 
 
393 aa  175  9.999999999999999e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.327939  normal 
 
 
-
 
NC_008786  Veis_4910  extracellular ligand-binding receptor  30.65 
 
 
397 aa  173  5.999999999999999e-42  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.618157  normal  0.278899 
 
 
-
 
NC_011729  PCC7424_2862  urea ABC transporter, urea binding protein  29.88 
 
 
443 aa  172  7.999999999999999e-42  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013411  GYMC61_2778  urea ABC transporter, urea binding protein  35.74 
 
 
418 aa  172  9e-42  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_1823  extracellular ligand-binding receptor  35.09 
 
 
419 aa  172  1e-41  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.158541  n/a   
 
 
-
 
NC_010581  Bind_0976  urea ABC transporter, urea binding protein  32.32 
 
 
426 aa  168  1e-40  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_3112  urea ABC transporter, urea binding protein  32.14 
 
 
416 aa  167  2.9999999999999998e-40  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3690  urea ABC transporter, urea binding protein  31.58 
 
 
417 aa  166  5e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3381  ABC transporter substrate-binding protein  31.58 
 
 
417 aa  166  5e-40  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1443  urea ABC transporter, urea binding protein  31.68 
 
 
420 aa  165  1.0000000000000001e-39  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4361  extracellular ligand-binding receptor  30.71 
 
 
438 aa  164  2.0000000000000002e-39  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000367621  normal 
 
 
-
 
NC_007912  Sde_2975  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  33.24 
 
 
416 aa  164  2.0000000000000002e-39  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_008786  Veis_0349  extracellular ligand-binding receptor  31.53 
 
 
407 aa  164  2.0000000000000002e-39  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3572  ABC transporter substrate-binding protein  31.3 
 
 
422 aa  165  2.0000000000000002e-39  Methylobacterium populi BJ001  Bacteria  normal  0.536665  normal 
 
 
-
 
NC_010510  Mrad2831_6186  urea ABC transporter, urea binding protein  32.34 
 
 
410 aa  163  6e-39  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.411723  normal  0.830735 
 
 
-
 
NC_007958  RPD_3864  amide-urea binding protein  30.32 
 
 
420 aa  163  6e-39  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.601855  normal 
 
 
-
 
NC_007947  Mfla_1775  twin-arginine translocation pathway signal  34.14 
 
 
414 aa  162  8.000000000000001e-39  Methylobacillus flagellatus KT  Bacteria  normal  0.185236  normal 
 
 
-
 
NC_009485  BBta_0654  branched chain amino-acid ABC transporter substrate-binding protein  31.78 
 
 
391 aa  161  2e-38  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.379667 
 
 
-
 
NC_010505  Mrad2831_5512  ABC transporter substrate-binding protein  30.81 
 
 
422 aa  161  2e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.115941  normal  0.320522 
 
 
-
 
NC_010725  Mpop_1139  urea ABC transporter, urea binding protein  31.03 
 
 
413 aa  160  3e-38  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1252  amide-urea binding protein  31.68 
 
 
392 aa  158  2e-37  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0854371  normal  0.451875 
 
 
-
 
NC_010511  M446_0593  urea ABC transporter, urea binding protein  30.39 
 
 
418 aa  157  2e-37  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0692994 
 
 
-
 
NC_010172  Mext_1200  urea ABC transporter, urea binding protein  30.94 
 
 
413 aa  157  4e-37  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.12535 
 
 
-
 
NC_011757  Mchl_1360  urea ABC transporter, urea binding protein  30.94 
 
 
413 aa  156  5.0000000000000005e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.396806  normal 
 
 
-
 
NC_004578  PSPTO_4078  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  31.32 
 
 
414 aa  156  6e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.749846  n/a   
 
 
-
 
NC_013510  Tcur_3240  urea ABC transporter, urea binding protein  35.58 
 
 
405 aa  156  6e-37  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.00360419  n/a   
 
 
-
 
NC_008820  P9303_29741  putative urea ABC transporter, substrate binding protein  29.66 
 
 
431 aa  156  8e-37  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007948  Bpro_0564  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  29.09 
 
 
420 aa  154  2e-36  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1711  branched chain amino acid ABC transporter periplasmic ligand-binding protein  30.77 
 
 
421 aa  154  2.9999999999999998e-36  Burkholderia xenovorans LB400  Bacteria  normal  0.0299695  normal 
 
 
-
 
NC_009485  BBta_1953  putative aliphatic amidase expression-regulating protein (amiC)  30.79 
 
 
410 aa  153  5e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA1662  ABC transporter, periplasmic binding protein, putative  30.32 
 
 
428 aa  152  1e-35  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2260  urea ABC transporter, urea binding protein  28.99 
 
 
440 aa  152  1e-35  Cyanothece sp. PCC 7425  Bacteria  normal  0.411735  normal 
 
 
-
 
NC_013422  Hneap_1597  urea ABC transporter, urea binding protein  32.65 
 
 
414 aa  151  2e-35  Halothiobacillus neapolitanus c2  Bacteria  normal  0.948764  n/a   
 
 
-
 
NC_012880  Dd703_0809  Extracellular ligand-binding receptor  27.65 
 
 
414 aa  151  3e-35  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0700  urea ABC transporter, urea binding protein  30.94 
 
 
463 aa  149  8e-35  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0172324  hitchhiker  0.0000000649369 
 
 
-
 
NC_009338  Mflv_3798  extracellular ligand-binding receptor  31.3 
 
 
402 aa  149  9e-35  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2007  urea ABC transporter, urea binding protein  30.16 
 
 
405 aa  149  1.0000000000000001e-34  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010515  Bcenmc03_5668  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  29.56 
 
 
424 aa  147  3e-34  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.851164  normal 
 
 
-
 
NC_008816  A9601_08881  putative urea ABC transporter, substrate binding protein  29.46 
 
 
425 aa  145  9e-34  Prochlorococcus marinus str. AS9601  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3732  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  29.28 
 
 
424 aa  145  9e-34  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4636  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  29.28 
 
 
424 aa  145  9e-34  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2291  extracellular ligand-binding receptor  31.23 
 
 
421 aa  145  1e-33  Mycobacterium sp. MCS  Bacteria  normal  0.553297  n/a   
 
 
-
 
NC_008705  Mkms_2338  extracellular ligand-binding receptor  31.23 
 
 
421 aa  145  1e-33  Mycobacterium sp. KMS  Bacteria  normal  normal  0.267805 
 
 
-
 
NC_008312  Tery_0130  extracellular ligand-binding receptor  27.41 
 
 
423 aa  145  2e-33  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0243473 
 
 
-
 
NC_010676  Bphyt_5759  putative UreA/short-chain amide transport system substrate-binding protein precursor  27.42 
 
 
411 aa  145  2e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2161  urea ABC transporter, urea binding protein  29.31 
 
 
422 aa  144  3e-33  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.269161  n/a   
 
 
-
 
NC_012912  Dd1591_2746  urea ABC transporter, urea binding protein  30.05 
 
 
423 aa  144  3e-33  Dickeya zeae Ech1591  Bacteria  normal  0.276837  n/a   
 
 
-
 
NC_008825  Mpe_A3587  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  28.4 
 
 
418 aa  144  3e-33  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1289  putative substrate-binding component of ABC transporter  35.55 
 
 
436 aa  144  4e-33  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_2250  putative urea ABC transporter, urea binding protein  28.85 
 
 
431 aa  144  4e-33  Synechococcus sp. CC9902  Bacteria  normal  0.582147  n/a   
 
 
-
 
NC_009832  Spro_1421  putative substrate-binding periplasmic transport protein  28.85 
 
 
422 aa  142  7e-33  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0701  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  28.68 
 
 
421 aa  142  9e-33  Pseudomonas mendocina ymp  Bacteria  normal  0.525993  normal 
 
 
-
 
NC_013421  Pecwa_2500  urea ABC transporter, urea binding protein  29.06 
 
 
422 aa  142  9.999999999999999e-33  Pectobacterium wasabiae WPP163  Bacteria  normal  0.172849  n/a   
 
 
-
 
NC_008726  Mvan_2596  extracellular ligand-binding receptor  31.44 
 
 
402 aa  141  1.9999999999999998e-32  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.677611 
 
 
-
 
NC_011884  Cyan7425_0810  putative PAS/PAC sensor protein  28.73 
 
 
840 aa  141  1.9999999999999998e-32  Cyanothece sp. PCC 7425  Bacteria  normal  0.643579  normal  0.828908 
 
 
-
 
NC_011757  Mchl_1506  putative substrate-binding component of ABC transporter  36.92 
 
 
436 aa  142  1.9999999999999998e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3931  urea ABC transporter, urea binding protein  29.24 
 
 
417 aa  140  3.9999999999999997e-32  Thauera sp. MZ1T  Bacteria  normal  0.606906  n/a   
 
 
-
 
NC_010002  Daci_0220  urea ABC transporter, urea binding protein  30.11 
 
 
421 aa  140  3.9999999999999997e-32  Delftia acidovorans SPH-1  Bacteria  normal  0.618006  normal 
 
 
-
 
NC_009656  PSPA7_5579  hypothetical protein  28.33 
 
 
421 aa  140  4.999999999999999e-32  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4292  putative urea/short-chain amide transport system substrate-binding protein  27.32 
 
 
412 aa  139  7e-32  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0103855 
 
 
-
 
NC_008463  PA14_64270  hypothetical protein  28.19 
 
 
421 aa  139  7e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00916173  normal 
 
 
-
 
NC_009077  Mjls_2330  extracellular ligand-binding receptor  32.34 
 
 
421 aa  139  1e-31  Mycobacterium sp. JLS  Bacteria  normal  0.26288  normal  0.0264278 
 
 
-
 
NC_013093  Amir_1674  urea ABC transporter, urea binding protein  29.51 
 
 
407 aa  138  2e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3881  putative aliphatic amidase expression-regulating protein  29.62 
 
 
411 aa  137  3.0000000000000003e-31  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007516  Syncc9605_2620  putative urea ABC transporter, substrate binding protein  29.63 
 
 
432 aa  137  3.0000000000000003e-31  Synechococcus sp. CC9605  Bacteria  normal  0.0558299  normal  0.886918 
 
 
-
 
NC_009654  Mmwyl1_0948  branched-chain amino acid ABC transporter, putative  28.8 
 
 
427 aa  136  6.0000000000000005e-31  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_1560  urea ABC transporter, substrate-binding protein  27.02 
 
 
422 aa  136  7.000000000000001e-31  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008255  CHU_1255  branched-chain amino acid ABC transporter, periplasmic protein  29.07 
 
 
445 aa  136  7.000000000000001e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.857524 
 
 
-
 
NC_012791  Vapar_3145  urea ABC transporter, urea binding protein  28.93 
 
 
422 aa  136  8e-31  Variovorax paradoxus S110  Bacteria  normal  0.770654  n/a   
 
 
-
 
NC_007969  Pcryo_0994  branched-chain amino acid ABC transporter periplasmic substrate-binding protein  27.91 
 
 
454 aa  136  8e-31  Psychrobacter cryohalolentis K5  Bacteria  normal  0.603537  normal 
 
 
-
 
NC_011004  Rpal_2663  putative UreA/short-chain amide transport system substrate-binding protein precursor  26.58 
 
 
412 aa  135  9.999999999999999e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0749447  n/a   
 
 
-
 
NC_009338  Mflv_1687  extracellular ligand-binding receptor  30 
 
 
413 aa  135  9.999999999999999e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_00881  ABC-type branched-chain amino acid transport system, periplasmic component  28.3 
 
 
403 aa  135  9.999999999999999e-31  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4841  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  27.86 
 
 
421 aa  134  1.9999999999999998e-30  Pseudomonas putida KT2440  Bacteria  normal  normal  0.365474 
 
 
-
 
NC_010322  PputGB1_4898  urea ABC transporter, urea binding protein  28.36 
 
 
421 aa  134  1.9999999999999998e-30  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0308389 
 
 
-
 
NC_004578  PSPTO_4885  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  29.06 
 
 
421 aa  135  1.9999999999999998e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4426  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  29.17 
 
 
421 aa  134  1.9999999999999998e-30  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.171999 
 
 
-
 
NC_009512  Pput_4719  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  27.86 
 
 
421 aa  134  1.9999999999999998e-30  Pseudomonas putida F1  Bacteria  normal  0.14369  normal  0.0383938 
 
 
-
 
NC_007577  PMT9312_0829  putative urea ABC transporter, substrate binding protein  28.92 
 
 
425 aa  134  1.9999999999999998e-30  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3202  putative aliphatic amidase expression-regulating protein, amiC  26.7 
 
 
412 aa  134  1.9999999999999998e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.836908 
 
 
-
 
NC_009485  BBta_7583  ABC transporter substrate-binding protein  29.23 
 
 
393 aa  135  1.9999999999999998e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.185627  normal  0.979023 
 
 
-
 
NC_007963  Csal_2313  putative urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic protein precursor  25.86 
 
 
443 aa  135  1.9999999999999998e-30  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00688905  n/a   
 
 
-
 
NC_010465  YPK_2873  urea ABC transporter, urea binding protein  29.41 
 
 
422 aa  134  3e-30  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.862041  n/a   
 
 
-
 
NC_009708  YpsIP31758_2794  urea ABC transporter, urea binding protein  29.41 
 
 
422 aa  134  3e-30  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_08861  putative urea ABC transporter, substrate binding protein  28.92 
 
 
425 aa  134  3e-30  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1340  urea ABC transporter urea binding protein  29.41 
 
 
422 aa  134  3e-30  Yersinia pestis Angola  Bacteria  normal  normal  0.231626 
 
 
-
 
NC_007973  Rmet_0952  twin-arginine translocation pathway signal  30.87 
 
 
419 aa  134  3e-30  Cupriavidus metallidurans CH34  Bacteria  normal  0.553309  normal  0.40345 
 
 
-
 
NC_006348  BMA2176  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein, putative  28.54 
 
 
435 aa  133  6e-30  Burkholderia mallei ATCC 23344  Bacteria  normal  0.253407  n/a   
 
 
-
 
NC_008836  BMA10229_A2565  putative amino acid ABC transporter, periplasmic amino acid-binding protein  28.54 
 
 
435 aa  133  6e-30  Burkholderia mallei NCTC 10229  Bacteria  decreased coverage  0.000125255  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0732  putative amino acid ABC transporter, periplasmic amino acid-binding protein  28.54 
 
 
435 aa  133  6e-30  Burkholderia mallei SAVP1  Bacteria  normal  0.909457  n/a   
 
 
-
 
NC_009080  BMA10247_2048  putative amino acid ABC transporter, periplasmic amino acid-binding protein  28.54 
 
 
435 aa  133  6e-30  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0410415  n/a   
 
 
-
 
NC_008740  Maqu_3001  ABC-type branched-chain amino acid transport system, periplasmic component  28.14 
 
 
433 aa  133  6e-30  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1103  urea ABC transporter, urea binding protein  27.2 
 
 
433 aa  132  6.999999999999999e-30  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
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