| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1045 |
|---|
| Symbol | |
|---|
| ID | 4021521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1198041 |
|---|
| End bp | 1199264 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637961237 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_568184 |
|---|
| Protein GI | 91975525 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.457214 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGCG ACTCACCCCA CAATCTCACC CGCCGCCGCT TCCTCTCCAA CTTCGCCTTC
GCGAGCACAG GGCTGGCGAC CGGCGTCGGC AGCTGGGTGG TGCGGCCCGA TTGGGCCAAC
GCCGCCGCCG GCGCGATCAA GGTCGGCATC GCCACCGACC TGACCGGCCC GATGGGTTAC
GCCGGCAACG CCGACGCCAA CGTCGCCAAG ATGGTGTTGA AGCAGATCAA CGACGCCGGC
GGCCTGCTCG GCCGTCCTTT GGAGCTCTAC ATCGAGGACA CCGCCTCCAA CGAAGCGGTC
GCGGTCGGCA ACGTCCGCAA GCTGATCCAG CGCGACAAGG TCGATCTCGT GCTCGGCGGC
ATCACCTCGT CGATGCGCAA TGCGATCAAG GACGTCATCG TCGCACGCGG AAAGACGCTG
TACATTTATC CACAGCTTTA CGAAGGCAAG GAATGCACGC CCAACCTGTT CTGCACCGGA
CCGACCCCGG CGCAGCAGTG CGATGAATTC ATCCCGTGGC TGATCAAGAA CGGCGGCAAG
AAATTCGCGC TGCCGAGCGC CAATTACGTC TGGCCGCACA CGCTCAATGT CTATGCCCGC
AAGGTGATCG AGGCCAATGG CGGCGAGGTC GTGCTGGAGG AATACTACCC GCTCGACCAG
ATCGACTTCT CATCGACGGT CAACCGAATC ATCTCCAACA AGGTCGACGT CGTATTCAAT
ACCGTGATCC CGCCGGGCGT CGGTCCGTTC TTCAAGCAAC TCTATGAGGC CGGCTTCCTC
AAGAACGGCG GCAGGCTGGC CTGCGTCTAC TACGACGAGA ATACGCTCGG CATCAATCAG
CCTGCGGAGA TCGAGGGCCT CGCGAGCTGC CTCGACTACT TCAAGGCCGT CGCCAAGACC
GATCCGGTCA GCGCTAAAAT CCAGGCGGAA TACGACAAGG CCTACCCTGG CAACTTCCTG
TTTGCCGCGG GCAGCGCCGC CACCGGTACC TATCGCGGCC TGAAGCTCTG GGAGGCTGCG
GTGAAGGAAG CCGGCAAGAT CGACCGCGAC GGCGTCGCCA CGGCGATGGA TCACGCCAAG
ATCACCGACG GCCCGGGCGG GCCGGCTGAG ATGGTGCCGG GCAAACGGCA TTGCAAGATG
AACATGTACA CCGCGGTGGC CAAGAACGGC AGCTACGAGA TCATCGCCCG CAGTAACGGC
CTGGTCGATC CGAAGGAATG CTGA
|
|---|
| Protein sequence | MSSDSPHNLT RRRFLSNFAF ASTGLATGVG SWVVRPDWAN AAAGAIKVGI ATDLTGPMGY
AGNADANVAK MVLKQINDAG GLLGRPLELY IEDTASNEAV AVGNVRKLIQ RDKVDLVLGG
ITSSMRNAIK DVIVARGKTL YIYPQLYEGK ECTPNLFCTG PTPAQQCDEF IPWLIKNGGK
KFALPSANYV WPHTLNVYAR KVIEANGGEV VLEEYYPLDQ IDFSSTVNRI ISNKVDVVFN
TVIPPGVGPF FKQLYEAGFL KNGGRLACVY YDENTLGINQ PAEIEGLASC LDYFKAVAKT
DPVSAKIQAE YDKAYPGNFL FAAGSAATGT YRGLKLWEAA VKEAGKIDRD GVATAMDHAK
ITDGPGGPAE MVPGKRHCKM NMYTAVAKNG SYEIIARSNG LVDPKEC
|
|---|
| |