| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_2007 |
|---|
| Symbol | |
|---|
| ID | 7094205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | - |
|---|
| Start bp | 2179706 |
|---|
| End bp | 2180923 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643465333 |
|---|
| Product | urea ABC transporter, urea binding protein |
|---|
| Protein accession | YP_002362311 |
|---|
| Protein GI | 217978164 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCCTTTG TCGCACAACC TATGAGGATC TTGATGAAGC CGACGCAGCG GCCTGCCGCA
CAATTGTCTA TCGCCCTGCT CGCCGCGACC GTGCTGAGCT CGCCCGCCTT CGCCGAAACG
GTCAAGGTCG GCGTGCTCCA ATCCCTCAGC GGCACAATGG CCATCAGCGA AGTCACGGTG
AAGAACGCCG AGATGATGGC TATCGACGAA ATCAACGCGG CCGGCGGCGT GCTCGGCAAG
CAGATCGAGC CGATCGTCGA GGACGGGGCC TCCGATCCCG CGATCTTCGC CCAGAAAGCC
ACCAAGCTCG TGCAGGACAA TGGCGTCGTC ACCGTGTTCG GCGGCTGGAC CTCGGCGAGC
CGCAAGGCGA TGCTGCCTGT GTTCCAGAAG CTGAAGAGCC TGCTTTGGTA TCCGGTACAG
TTCGAGGGCA ACGAATGCTC GCCGGCCATC ATGTATTCCG GCGCGCAGCC GAACCAGCAG
ATTGTGCCGG CCTATGACTG GGGCAAGACG AAGGGCTATA AATCCTTCTT CCTCGTCGGC
TCCGACTACG TCTTTCCACG CACCGCCAAT CTCATCTTGA AAAAACATAT CGCGCTCGAC
AAGCTGACGA CGGCTGGCGA GGAATATGTC CCGCTCGGCG GCTCCGATTT CAGCGCGGTC
ATCGCCAAGA TTCAGGCGGC CAAGCCGGAC GTCATCTACA GCACCCTGAA CGGGGATTCC
AACGTCTCCT TCTTCAAACA GATGTCGGCC GCCGGCATCA AGCTGCCGGT GATGTCCTTC
TCGATCGGCG AGCAGGAAGC GCAGGCGATG GGCGCCTCGC TCGTCGAGGG CAGCTACGCG
GGCTGGAATT ACTTCCAGAG CATCGACACC CCGGCGAACA AGAAATTCGT CGCCGATTAT
CAGACTAAGT TCGGCGCTGG CGCAGCGGTC ACCGACCCGA TGGTGCATGG CTATGTCGAC
GTCTACGCCT GGAAGGCCGC CGTCGAGAAG GCCGGCGCCT TCGATGTTGA CAAAGTGCGC
AAGGCGGCGG TCGGCCTCGA GCTGGCGACG CCGATGGGCG CCGTCAAATT CGCGCCGAAC
CAAAGTCTCT ACCAGAAGGC CTATGTGGGC GAGCTCGACT CGAAGGGACA GTTCAAGATC
CTCTGGGAGT CGAAGGACGT TATTCCGCCG GACCCTTACG ATCCCGTCGC CTTCCCCGGA
AAGAAGTGCG AGCTCTGA
|
|---|
| Protein sequence | MAFVAQPMRI LMKPTQRPAA QLSIALLAAT VLSSPAFAET VKVGVLQSLS GTMAISEVTV
KNAEMMAIDE INAAGGVLGK QIEPIVEDGA SDPAIFAQKA TKLVQDNGVV TVFGGWTSAS
RKAMLPVFQK LKSLLWYPVQ FEGNECSPAI MYSGAQPNQQ IVPAYDWGKT KGYKSFFLVG
SDYVFPRTAN LILKKHIALD KLTTAGEEYV PLGGSDFSAV IAKIQAAKPD VIYSTLNGDS
NVSFFKQMSA AGIKLPVMSF SIGEQEAQAM GASLVEGSYA GWNYFQSIDT PANKKFVADY
QTKFGAGAAV TDPMVHGYVD VYAWKAAVEK AGAFDVDKVR KAAVGLELAT PMGAVKFAPN
QSLYQKAYVG ELDSKGQFKI LWESKDVIPP DPYDPVAFPG KKCEL
|
|---|
| |