| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3864 |
|---|
| Symbol | |
|---|
| ID | 4024380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4302470 |
|---|
| End bp | 4303732 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637964068 |
|---|
| Product | amide-urea binding protein |
|---|
| Protein accession | YP_570986 |
|---|
| Protein GI | 91978327 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.601855 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGACA AGAAAAAGCA GGGCCTTCAC TCGCCGTTCC GACGCAAGCT TCTGATGGGC
ATGGCCGCGA TCCCGGCGAT GTCGCTGCTG CCGCGAACAT CGTTCGCCCA GGCGCCGGCG
ACTTCCGTCG TCAACACCAC CGGCCTGGCA GTGACCGATA CGGAGGTCAC TGTCGGAATC
CTGCACTCGG TCACGGGCAC GATGGCGATC TCGGAGACCG GTTCGGTGCA GGCCGAGAAG
CTGGCGATCG AGCAGATCAA CGCCGCCGGC GGCGTGCTCG GCCGCAAGAT CAAGTTCATC
CAGGAAGACG GCGCGTCCGA TTGGCCGAAT TTCGCCGAGA AGGCCAAGAA GCTTCTGGTC
AACGACAAAT GCGCCGCGGT GATGGGCTGC TGGACCTCGG CCTCGCGCAA GGCGGTGCTG
CCGGTGTTCG AGCAATACAA CGGCATGTTG TACTACCCGA CCTTCTACGA AGGCCTGGAG
CAGTCCAAGA ACGTCATCTA CACCGGCCAG GAGGCCACCC AGCAGATCAT CGCCGGCCTC
GATTGGGTCA ACAAGACCAA GGGCGCCAAG AGCTTCTATC TGCTCGGCTC GGACTACATC
TGGCCGCGCA CCTCCAACAA GATCGCGCGC AAGCACATCG AAAGCCATCT GAAGGACGCC
AAGGTGGTCG GCGAGGAGTA CTTCCCGCTC GGTCACACCC AATTCAACTC GGTGATCAAC
AAGATCAAGC TCACCAAGCC GGACGTGATC TACGCGATCA TCGTCGGCGG TTCGAATGTC
GCGTTCTACA AGCAGCTCAA GGCGGCCGGC ATCGACCTGT CGAAGCAGAC GCTGTTGACG
ATCTCGGTCA CCGAGGACGA GATCGACGGC ATCGGCGGCG AGAACATCGC GGGAGCCTAT
GCCTGCATGA AGTACTTCCA GTCGCTCGAC AATCCGAACA ACAAGGAATT CGTCGCCGCA
TTCAAGAAGA TGTGGGGCGA GAAGACTGTG ATCGGAGACG TCACCCAGGC TGCCTATCTC
GGCCCGTGGC TGTGGAAGTT GACCGTGGAG AAGGCCGGCT CGTTCGACGT CGACAAGGTG
GCGGCCGCGT CGCCGGGCGT GGAATTCAAG GGCGCGCCGG AAGGCTACGT TCGGGTCCAC
GAGAATCACC ACCTCTGGTC GAAGACCAGG GTCGGTCGCG CCAAGCTCGA TGGCCAGTAC
GAACTGGTCT ACGAGACCGC CGATCTGGTC GAACCGGACC CGTTCCCGAA GGGCTATCAG
TAA
|
|---|
| Protein sequence | MSDKKKQGLH SPFRRKLLMG MAAIPAMSLL PRTSFAQAPA TSVVNTTGLA VTDTEVTVGI
LHSVTGTMAI SETGSVQAEK LAIEQINAAG GVLGRKIKFI QEDGASDWPN FAEKAKKLLV
NDKCAAVMGC WTSASRKAVL PVFEQYNGML YYPTFYEGLE QSKNVIYTGQ EATQQIIAGL
DWVNKTKGAK SFYLLGSDYI WPRTSNKIAR KHIESHLKDA KVVGEEYFPL GHTQFNSVIN
KIKLTKPDVI YAIIVGGSNV AFYKQLKAAG IDLSKQTLLT ISVTEDEIDG IGGENIAGAY
ACMKYFQSLD NPNNKEFVAA FKKMWGEKTV IGDVTQAAYL GPWLWKLTVE KAGSFDVDKV
AAASPGVEFK GAPEGYVRVH ENHHLWSKTR VGRAKLDGQY ELVYETADLV EPDPFPKGYQ
|
|---|
| |