| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3202 |
|---|
| Symbol | |
|---|
| ID | 5151433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 3352404 |
|---|
| End bp | 3353642 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640558067 |
|---|
| Product | putative aliphatic amidase expression-regulating protein, amiC |
|---|
| Protein accession | YP_001239220 |
|---|
| Protein GI | 148254635 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | [TIGR03669] urea ABC transporter, substrate-binding protein, archaeal type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.836908 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGAT CTGGATTGCG GGGGCTGCGC GCCGCGGCCC TCACGGGGAC GCTTGTCTTC
GCGTCAGGCG CTTATGCTGC GGAAAACCCG ATCAAGCTCG GCGTGCTGGA GGACCAGTCC
GGCGACTTCG CCGCCGCCAC CATCGGCAAG GTGCACGCCA TCCAGCTGGC GGCCGAGGAG
ATCAACAAGT CGGGCGGCAT CATGGGCCGT CCCCTGGAGC TCGTGACCTA CGACACCCAG
TCGGACAACA CGCGCTACCA GGAGTTCATG CGCCGCGTGC TGCAGCGGGA CAAGGTCGAT
GTCGTGTTCG CCGGCTTCTC CTCGGCCTCG CGCGAGGCCT ACCGGCCGAT CGTCGACCAG
TTCAACGGCT TCGCCTTCTA CAACAACCAG TATGAGGGCG GCGTCTGCGA CGGCCACATG
GTGGTGACCG GCGCCGTTCC CGAGCAGCAG TTCTCGACGC TCATTCCCTA CATGATGCAG
ACCTACGGCA AGAAGGTCTA CACGCTCGCC GCCGACTATA ATTTCGGCCA GATCTCGGCC
GAGTGGGTGC GCAAGATCGT CAAGGAGAAT GGCGGCGAGA TGGCCGGCGA GGAGTTCATC
CCGCTCGGCG TGTCGCAGTT CTCGCAAAGC ATCCAGAACA TCCAGAAAGC CAAGCCCGAC
TTCGTCGTGA CCCTGCTGGT CGGCACCGCG CAGGCCTCCT ATTACGAGCA GGCGGCCTCC
GCCAACGTCA ACCTGCCGAT GGCCTCGTCG GTCAATGTCG GCCAGGGCTA TGAGCACAAG
CGCTTCAAGC CGCCGAGCCT CAAGGACATG TACGTCACCA CCAACTACAT CGAGGAGATC
GATACGCCGA AGAGCAAGGA GTTCTACGCC AAGTTCAAGG CCAAGTTCCC CAGCGAGCCC
TATGTGAACC AGGAGGCCGA GAACTCCTAC CTCGCGGTCT ATCTCTACAA GCAGATGGTG
GAGCGGGCGA AGTCGACCAA TCGCGACGAG ATCCGCAAGG TGATCGCGAC GGGCGACGTC
TGCATGGACG CGCCGGAAGG CAAGGTCTGC ATCGACCCGA AGAGCCAGCA CATGTCGCAC
ACTATCTACC TCGCCAAGGT CGGCGCCGAC CATTCGATCT CGTTCCCGAA GATCTGGGAG
GACATCAAGC CGTATTGGCT GGGCGAGGCC GGCTGTGACC TGACCAAGAA GGATCCGATG
GCGCAATACA CGCCGTCGAA TCCGCCGCCG AAGCCCTGA
|
|---|
| Protein sequence | MTRSGLRGLR AAALTGTLVF ASGAYAAENP IKLGVLEDQS GDFAAATIGK VHAIQLAAEE
INKSGGIMGR PLELVTYDTQ SDNTRYQEFM RRVLQRDKVD VVFAGFSSAS REAYRPIVDQ
FNGFAFYNNQ YEGGVCDGHM VVTGAVPEQQ FSTLIPYMMQ TYGKKVYTLA ADYNFGQISA
EWVRKIVKEN GGEMAGEEFI PLGVSQFSQS IQNIQKAKPD FVVTLLVGTA QASYYEQAAS
ANVNLPMASS VNVGQGYEHK RFKPPSLKDM YVTTNYIEEI DTPKSKEFYA KFKAKFPSEP
YVNQEAENSY LAVYLYKQMV ERAKSTNRDE IRKVIATGDV CMDAPEGKVC IDPKSQHMSH
TIYLAKVGAD HSISFPKIWE DIKPYWLGEA GCDLTKKDPM AQYTPSNPPP KP
|
|---|
| |