Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4719 |
Symbol | |
ID | 5195576 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5287041 |
End bp | 5288306 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640589202 |
Product | ABC-type branched-chain amino acid transport systems periplasmic component-like protein |
Protein accession | YP_001270023 |
Protein GI | 148549921 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.14369 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0383938 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCGTC GCAGTCTGAT CAAGGCCCTT ACCCTCAGCG CATCGATTGC GGCGATGGGC CTGAGCTGGA GTATCCAGGC CGCCGAGACC ATCAAGGTCG GTATCCTGCA TTCGCTTTCC GGGACCATGG CCATTTCCGA GACATCGCTC AAGGACATGG CGCTGATGAC CATCGAGCAG ATCAACGCCA AGGGTGGCGT GAACGGCAAG ATGCTGGAAC CGGTGGTGGT CGACCCGGCG TCCAACTGGC CGCTGTTCGC TGAAAAGAGC CGCCAACTGC TGACCCAAGA CAAAGTGGCC GTGGTGTTCG GCTGCTGGAC CTCCGTGTCG CGCAAGTCCG TTCTGCCGGT GTTCGAAGAA CTCAACGGCC TGCTGTTCTA CCCGGTGCAG TATGAGGGCG AAGAGATGTC GCCGAACGTG TTCTACACGG GCGCCGCCCC GAACCAGCAG GCCATCCCGG CCGTGGAATA CCTGATGAGC GAGGACGGCG GCAGCGCCAA GCGCTTCTTC CTGTTGGGCA CCGATTACGT CTACCCGCGC ACCACCAACA AGATCCTGCG CGCATTCCTG CACAGCAAAG GCGTGGCCGA CAAGGACATC GAAGAGGTTT ACACGCCCTT TGGCCACGCT GATTACCAGA CCATTGTCGC CAGCATCAAA AAGTTCTCCG CCGGCGGCAA GACCGCTGTC ATATCCACAG TCAACGGTGA CTCCAACGTG CCGTTCTACA AGGAACTGGC CAACCAGGGC CTGAAGGCCA CCGACGTGCC GGTGGTGGCC TTCTCGGTGG GCGAGGAGGA ACTGCGCGGC ATCGACACCA AACCGCTGGT GGGCCACCTG GCGGCATGGA ACTACTTCGA ATCGGTGGAT AACCCGGTCA ACCAGAAATT CGTCGCCGAC TGGAAGGCCT ACGCCAAGGC CAAGGGCCTG CCGGGTGCCG ACAAGGCCGT GACCAACGAC CCCATGGAAG CCACCTACGT GGGCATCCAC ATGTGGGCCC AGGCTGTCGA GAAAGCCAAG TCCACTGACG TTGACAAGGT CCGCGAAGCA CTGGCCGGGC AGAGCTTCGA GGCGCCGTCG GGCTTCACCC TGACCATGGA CAAGACCAAC CACCACCTGC ACAAGCCGGT GATGATCGGC GAGATTCAGG ATGACGGGCA GTTCAGCGTG GTGTGGGAAA CCGAGCAGCC ACTGCGGGCG CAGCCATGGA GCCCGTTCAT TCCGGGCAAT GAGAAGCGGC CAGATTACGC CGTGAAAGGT AACTGA
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Protein sequence | MKRRSLIKAL TLSASIAAMG LSWSIQAAET IKVGILHSLS GTMAISETSL KDMALMTIEQ INAKGGVNGK MLEPVVVDPA SNWPLFAEKS RQLLTQDKVA VVFGCWTSVS RKSVLPVFEE LNGLLFYPVQ YEGEEMSPNV FYTGAAPNQQ AIPAVEYLMS EDGGSAKRFF LLGTDYVYPR TTNKILRAFL HSKGVADKDI EEVYTPFGHA DYQTIVASIK KFSAGGKTAV ISTVNGDSNV PFYKELANQG LKATDVPVVA FSVGEEELRG IDTKPLVGHL AAWNYFESVD NPVNQKFVAD WKAYAKAKGL PGADKAVTND PMEATYVGIH MWAQAVEKAK STDVDKVREA LAGQSFEAPS GFTLTMDKTN HHLHKPVMIG EIQDDGQFSV VWETEQPLRA QPWSPFIPGN EKRPDYAVKG N
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