More than 300 homologs were found in PanDaTox collection
for query gene Pmen_0701 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_4841  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  90.26 
 
 
421 aa  795    Pseudomonas putida KT2440  Bacteria  normal  normal  0.365474 
 
 
-
 
NC_012791  Vapar_4012  urea ABC transporter, urea binding protein  75.12 
 
 
422 aa  661    Variovorax paradoxus S110  Bacteria  normal  0.394915  n/a   
 
 
-
 
NC_003295  RSc2041  putative urea/short-chain amide-binding signal peptide protein  81.54 
 
 
418 aa  666    Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.300905 
 
 
-
 
NC_009076  BURPS1106A_3103  putative amino acid ABC transporter, periplasmic amino acid-binding protein  76.61 
 
 
435 aa  663    Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2746  urea ABC transporter, urea binding protein  85.48 
 
 
423 aa  764    Dickeya zeae Ech1591  Bacteria  normal  0.276837  n/a   
 
 
-
 
NC_010501  PputW619_4633  urea ABC transporter, urea binding protein  90.26 
 
 
421 aa  796    Pseudomonas putida W619  Bacteria  normal  0.688874  normal  0.0837107 
 
 
-
 
NC_004578  PSPTO_4885  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  89.55 
 
 
421 aa  795    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2565  putative amino acid ABC transporter, periplasmic amino acid-binding protein  76.37 
 
 
435 aa  663    Burkholderia mallei NCTC 10229  Bacteria  decreased coverage  0.000125255  n/a   
 
 
-
 
NC_008752  Aave_3500  twin-arginine translocation pathway signal  77.92 
 
 
420 aa  650    Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.421594 
 
 
-
 
NC_006348  BMA2176  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein, putative  76.37 
 
 
435 aa  663    Burkholderia mallei ATCC 23344  Bacteria  normal  0.253407  n/a   
 
 
-
 
NC_007005  Psyr_4426  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  90.02 
 
 
421 aa  796    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.171999 
 
 
-
 
NC_007298  Daro_1443  twin-arginine translocation pathway signal  77.7 
 
 
420 aa  680    Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_3067  putative amino acid ABC transporter, periplasmic amino acid-binding protein  76.61 
 
 
435 aa  663    Burkholderia pseudomallei 668  Bacteria  normal  0.656729  n/a   
 
 
-
 
NC_012856  Rpic12D_1870  urea ABC transporter, urea binding protein  79.95 
 
 
418 aa  679    Ralstonia pickettii 12D  Bacteria  normal  0.510403  normal  0.303887 
 
 
-
 
NC_007347  Reut_A0986  twin-arginine translocation pathway signal  78.85 
 
 
418 aa  677    Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3127  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  76.61 
 
 
435 aa  663    Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3211  twin-arginine translocation pathway signal  74.29 
 
 
420 aa  647    Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.35137  normal  0.840301 
 
 
-
 
NC_007492  Pfl01_0590  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  88.36 
 
 
421 aa  784    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0954  urea ABC transporter, urea binding protein  77.22 
 
 
431 aa  669    Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4014  branched chain amino acid ABC transporter periplasmic ligand-binding protein  77.33 
 
 
435 aa  669    Burkholderia sp. 383  Bacteria  normal  0.0416471  normal  0.65931 
 
 
-
 
NC_010159  YpAngola_A1340  urea ABC transporter urea binding protein  83.85 
 
 
422 aa  748    Yersinia pestis Angola  Bacteria  normal  normal  0.231626 
 
 
-
 
NC_013421  Pecwa_2500  urea ABC transporter, urea binding protein  85 
 
 
422 aa  764    Pectobacterium wasabiae WPP163  Bacteria  normal  0.172849  n/a   
 
 
-
 
NC_012917  PC1_2161  urea ABC transporter, urea binding protein  85.48 
 
 
422 aa  768    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.269161  n/a   
 
 
-
 
NC_008825  Mpe_A0697  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  76.96 
 
 
425 aa  638    Methylibium petroleiphilum PM1  Bacteria  normal  0.951166  normal 
 
 
-
 
NC_007651  BTH_I1504  urea/short-chain amide ABC transporter, periplasmic urea/short-chain amide-binding protein  76.85 
 
 
435 aa  666    Burkholderia thailandensis E264  Bacteria  decreased coverage  0.00196796  n/a   
 
 
-
 
NC_010084  Bmul_2482  urea ABC transporter, urea binding protein  77.09 
 
 
435 aa  667    Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_2048  putative amino acid ABC transporter, periplasmic amino acid-binding protein  76.37 
 
 
435 aa  663    Burkholderia mallei NCTC 10247  Bacteria  normal  0.0410415  n/a   
 
 
-
 
NC_007908  Rfer_3381  twin-arginine translocation pathway signal  76.37 
 
 
419 aa  671    Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0798  urea ABC transporter, urea binding protein  77.33 
 
 
435 aa  669    Burkholderia ambifaria MC40-6  Bacteria  normal  0.398503  normal 
 
 
-
 
NC_009439  Pmen_0701  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  100 
 
 
421 aa  868    Pseudomonas mendocina ymp  Bacteria  normal  0.525993  normal 
 
 
-
 
NC_009832  Spro_1421  putative substrate-binding periplasmic transport protein  84.73 
 
 
422 aa  759    Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_2251  urea ABC transporter, urea binding protein  77.03 
 
 
433 aa  668    Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1393  twin-arginine translocation pathway signal  74.64 
 
 
428 aa  662    Polaromonas sp. JS666  Bacteria  normal  0.656328  normal  0.386042 
 
 
-
 
NC_007951  Bxe_A3683  branched chain amino acid ABC transporter periplasmic ligand-binding protein  76.32 
 
 
432 aa  667    Burkholderia xenovorans LB400  Bacteria  normal  normal  0.277595 
 
 
-
 
NC_010524  Lcho_1084  urea ABC transporter, urea binding protein  75 
 
 
425 aa  654    Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011662  Tmz1t_3931  urea ABC transporter, urea binding protein  78.99 
 
 
417 aa  691    Thauera sp. MZ1T  Bacteria  normal  0.606906  n/a   
 
 
-
 
NC_010322  PputGB1_4898  urea ABC transporter, urea binding protein  90.74 
 
 
421 aa  798    Pseudomonas putida GB-1  Bacteria  normal  normal  0.0308389 
 
 
-
 
NC_010465  YPK_2873  urea ABC transporter, urea binding protein  83.85 
 
 
422 aa  748    Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.862041  n/a   
 
 
-
 
NC_009512  Pput_4719  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  90.02 
 
 
421 aa  793    Pseudomonas putida F1  Bacteria  normal  0.14369  normal  0.0383938 
 
 
-
 
NC_009656  PSPA7_5579  hypothetical protein  89.07 
 
 
421 aa  783    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0880  urea ABC transporter, urea binding protein  77.33 
 
 
435 aa  668    Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.824913 
 
 
-
 
NC_007973  Rmet_0952  twin-arginine translocation pathway signal  79.09 
 
 
419 aa  678    Cupriavidus metallidurans CH34  Bacteria  normal  0.553309  normal  0.40345 
 
 
-
 
NC_008060  Bcen_0431  twin-arginine translocation pathway signal  77.33 
 
 
435 aa  668    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2193  urea ABC transporter, urea binding protein  80.19 
 
 
418 aa  682    Ralstonia pickettii 12J  Bacteria  normal  normal  0.200796 
 
 
-
 
NC_008781  Pnap_0997  twin-arginine translocation pathway signal  74.52 
 
 
427 aa  658    Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0787  branched chain amino acid ABC transporter periplasmic ligand-binding protein  77.57 
 
 
435 aa  671    Burkholderia ambifaria AMMD  Bacteria  normal  0.238628  n/a   
 
 
-
 
NC_009708  YpsIP31758_2794  urea ABC transporter, urea binding protein  83.61 
 
 
422 aa  746    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_64270  hypothetical protein  89.31 
 
 
421 aa  784    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00916173  normal 
 
 
-
 
NC_008542  Bcen2424_0910  ABC-type branched-chain amino acid transport system periplasmic component  77.33 
 
 
435 aa  668    Burkholderia cenocepacia HI2424  Bacteria  normal  0.988343  n/a   
 
 
-
 
NC_009436  Ent638_1988  putative substrate-binding periplasmic transport protein  84.76 
 
 
423 aa  745    Enterobacter sp. 638  Bacteria  normal  normal  0.146215 
 
 
-
 
NC_008785  BMASAVP1_A0732  putative amino acid ABC transporter, periplasmic amino acid-binding protein  76.37 
 
 
435 aa  663    Burkholderia mallei SAVP1  Bacteria  normal  0.909457  n/a   
 
 
-
 
NC_009379  Pnuc_1202  putative urea/short-chain amide-binding signal peptide protein  72.73 
 
 
419 aa  617  1e-176  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0994  branched-chain amino acid ABC transporter periplasmic substrate-binding protein  77.11 
 
 
454 aa  617  1e-175  Psychrobacter cryohalolentis K5  Bacteria  normal  0.603537  normal 
 
 
-
 
NC_008340  Mlg_0188  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  66.5 
 
 
444 aa  578  1e-164  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1019  ABC-type branched-chain amino acid transport system, periplasmic component  69.36 
 
 
424 aa  572  1.0000000000000001e-162  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.18333 
 
 
-
 
NC_009654  Mmwyl1_0948  branched-chain amino acid ABC transporter, putative  67.64 
 
 
427 aa  550  1e-155  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1443  putative UreA short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor  69.9 
 
 
431 aa  544  1e-153  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000157117 
 
 
-
 
NC_007925  RPC_3702  branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor  65.37 
 
 
439 aa  528  1e-149  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_00881  ABC-type branched-chain amino acid transport system, periplasmic component  68.59 
 
 
403 aa  525  1e-148  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1255  branched-chain amino acid ABC transporter, periplasmic protein  64.6 
 
 
445 aa  525  1e-148  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.857524 
 
 
-
 
NC_007778  RPB_1794  urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor  67.53 
 
 
440 aa  523  1e-147  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.326487 
 
 
-
 
NC_009620  Smed_4184  ABC transporter periplasmic solute-binding protein precursor  64.46 
 
 
430 aa  522  1e-147  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.11561 
 
 
-
 
NC_009485  BBta_7018  branched chain amino-acid ABC transporter substrate-binding protein  67.01 
 
 
440 aa  521  1e-147  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.450777 
 
 
-
 
NC_008709  Ping_2986  ABC transporter for branched chain amino acids substrate binding protein  66.17 
 
 
425 aa  524  1e-147  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.199519 
 
 
-
 
NC_013422  Hneap_1103  urea ABC transporter, urea binding protein  62.56 
 
 
433 aa  518  1e-146  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0226  urea/short-chain amide ABC transporter, periplasmic urea/short-chain amide-binding protein  66.58 
 
 
436 aa  520  1e-146  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.867108 
 
 
-
 
NC_009720  Xaut_4149  putative urea short-chain amide or branched-chain amino acid uptake ABC transporter  64.86 
 
 
434 aa  521  1e-146  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4191  urea ABC transporter, urea binding protein  67.53 
 
 
440 aa  521  1e-146  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4605  urea ABC transporter, urea binding protein  65.91 
 
 
430 aa  517  1.0000000000000001e-145  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0446253  n/a   
 
 
-
 
NC_010511  M446_2620  putative UreA short-chain amide  65.66 
 
 
428 aa  515  1.0000000000000001e-145  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0882904 
 
 
-
 
NC_008740  Maqu_3001  ABC-type branched-chain amino acid transport system, periplasmic component  64.71 
 
 
433 aa  515  1.0000000000000001e-145  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3510  twin-arginine translocation pathway signal  65.97 
 
 
440 aa  509  1e-143  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.118582  normal 
 
 
-
 
NC_009952  Dshi_2695  putative aliphatic amidase expression-regulating protein  62.47 
 
 
452 aa  498  1e-140  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.92573  normal 
 
 
-
 
NC_011989  Avi_3494  ABC transporter substrate binding protein (urea/amide)  61.52 
 
 
429 aa  496  1e-139  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0993  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  63.45 
 
 
426 aa  498  1e-139  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1945  ABC branched chain amino acid transporter, substrate binding protein  62.94 
 
 
426 aa  494  9.999999999999999e-139  Rhodobacter sphaeroides ATCC 17029  Bacteria  hitchhiker  0.00107842  normal 
 
 
-
 
NC_011369  Rleg2_3063  urea ABC transporter, urea binding protein  63.66 
 
 
430 aa  491  9.999999999999999e-139  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.696445 
 
 
-
 
NC_007493  RSP_0301  ABC branched chain amino acid transporter, substrate binding protein  62.94 
 
 
426 aa  494  9.999999999999999e-139  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.176929  n/a   
 
 
-
 
NC_007963  Csal_2313  putative urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic protein precursor  60.49 
 
 
443 aa  493  9.999999999999999e-139  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00688905  n/a   
 
 
-
 
NC_012850  Rleg_3318  urea ABC transporter, urea binding protein  63.17 
 
 
430 aa  489  1e-137  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.490693  normal  0.457641 
 
 
-
 
NC_008687  Pden_4017  ABC branched chain amino acid transporter, substrate binding protein  60.7 
 
 
428 aa  462  1e-129  Paracoccus denitrificans PD1222  Bacteria  normal  0.568826  normal 
 
 
-
 
NC_009012  Cthe_1823  extracellular ligand-binding receptor  52.81 
 
 
419 aa  425  1e-118  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.158541  n/a   
 
 
-
 
NC_010571  Oter_4229  hypothetical protein  55.61 
 
 
426 aa  426  1e-118  Opitutus terrae PB90-1  Bacteria  normal  0.527328  normal  0.405756 
 
 
-
 
NC_013411  GYMC61_2778  urea ABC transporter, urea binding protein  55.05 
 
 
418 aa  408  1e-113  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_2862  urea ABC transporter, urea binding protein  52.07 
 
 
443 aa  392  1e-108  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008312  Tery_0130  extracellular ligand-binding receptor  48.93 
 
 
423 aa  384  1e-105  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0243473 
 
 
-
 
NC_007413  Ava_4361  extracellular ligand-binding receptor  50.4 
 
 
438 aa  376  1e-103  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000367621  normal 
 
 
-
 
NC_011884  Cyan7425_2260  urea ABC transporter, urea binding protein  50.39 
 
 
440 aa  374  1e-102  Cyanothece sp. PCC 7425  Bacteria  normal  0.411735  normal 
 
 
-
 
NC_013739  Cwoe_3498  urea ABC transporter, urea binding protein  47.57 
 
 
419 aa  366  1e-100  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0969064 
 
 
-
 
NC_013510  Tcur_3240  urea ABC transporter, urea binding protein  49.34 
 
 
405 aa  365  1e-99  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.00360419  n/a   
 
 
-
 
NC_014151  Cfla_0700  urea ABC transporter, urea binding protein  50.39 
 
 
463 aa  360  2e-98  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0172324  hitchhiker  0.0000000649369 
 
 
-
 
NC_013093  Amir_1674  urea ABC transporter, urea binding protein  49.47 
 
 
407 aa  356  3.9999999999999996e-97  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2596  extracellular ligand-binding receptor  46.95 
 
 
402 aa  349  6e-95  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.677611 
 
 
-
 
NC_009831  Ssed_3881  putative aliphatic amidase expression-regulating protein  45.41 
 
 
411 aa  348  1e-94  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2291  extracellular ligand-binding receptor  46.92 
 
 
421 aa  346  4e-94  Mycobacterium sp. MCS  Bacteria  normal  0.553297  n/a   
 
 
-
 
NC_008705  Mkms_2338  extracellular ligand-binding receptor  46.92 
 
 
421 aa  346  4e-94  Mycobacterium sp. KMS  Bacteria  normal  normal  0.267805 
 
 
-
 
NC_009077  Mjls_2330  extracellular ligand-binding receptor  46.65 
 
 
421 aa  344  1e-93  Mycobacterium sp. JLS  Bacteria  normal  0.26288  normal  0.0264278 
 
 
-
 
NC_010506  Swoo_3780  putative aliphatic amidase expression-regulating protein  42.65 
 
 
404 aa  345  1e-93  Shewanella woodyi ATCC 51908  Bacteria  normal  0.583472  hitchhiker  0.00053565 
 
 
-
 
NC_008820  P9303_29741  putative urea ABC transporter, substrate binding protein  47.78 
 
 
431 aa  343  4e-93  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_009338  Mflv_3798  extracellular ligand-binding receptor  45.24 
 
 
402 aa  341  2e-92  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>