| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0942 |
|---|
| Symbol | |
|---|
| ID | 3909796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1089488 |
|---|
| End bp | 1090711 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637882835 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_484563 |
|---|
| Protein GI | 86748067 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGCG ACAACAAACA CGCGTTCACC CGCCGCCGTT TCCTCTCCAA CTTCGCCTTC
GCCGGCACCG CGATCGCCAC CGGCGTCGGC AGCTGGGTCG TCCCGGCCGG CTGGGCCAAC
GCCGCCGCCG GCCCGATCAA GGTCGGCATC GGCACCGACC TCACCGGCCC GATGGGTTAT
GCCGGGAACG CCGATGCCAA CGTCGCCAAG ATGGTGATCA AGCAGATCAA CGACGCCGGC
GGCCTGCTCG GCAGGCCGAT CGAACTCTTC ATCGAGGACA CCGCGTCCAA CGAGGCCGTC
GCGGTCGGCA ACGTCCGCAA GCTGATCCAG CGCGACAAGG TCGACCTCGT GGTCGGCGGC
ATCACCTCGT CGATGCGCAA CGCCATCAAG GACGTCATCG TGTCGCGCGG CAAGACACTC
TACATCTATC CGCAACTCTA CGAAGGCAAG GAATGCACGC CGAACCTGTT CTGCACCGGC
CCGACCCCGG CGCAGCAGTG CGACGAGTTC ATCCCGTGGC TGATCAAGAA CGGCGGCAAG
AAATTCGCGC TGCCCTCCGC CAATTATGTC TGGCCGCACA CGCTCAACGT CTATGCCCGC
AAGGTGATCG AGGCCAATGG CGGCGAAGTG GTGCTCGAGG AGTACTACCC GCTTGATCAG
ATCGACTTCT CGTCGACCGT CAACCGCATC ATCTCCAACA AGGTCGATGT GGTGTTCAAC
ACCGTGATCC CGCCCGGTGT CGGCCCGTTC TTCAAGCAGC TTTATGAAGC GGGGTTCCTC
AAGAACGGCG GCCGGCTCGC CTGCGTGTAT TATGACGAGA ACACGCTCGG CATCAATCAG
CCGGCGGAGA TCGAAGGGCT GGCGAGCTGC CTCGACTACT TCAAGGCGCT CACCAAGGAC
GAGCCGTTCT CCGCCAAGCT GCAGGCCGAC TACGAAAAGG CGTTCCCGGG CAACTTCCTG
TTCGCGGCCG GCAGCGCCGC CACCGGCACC TATCGGGCCC TCAAGCTGTG GGAAGCCGCG
GTGAAGGAAG CCGGCAAGAT CGACCGCGAC GGCGTCGCCG CGGCGCTCGA TCACGCCAAG
ATCGCCGAAG GCCCGGGAGG CCCCGCCGAG ATGGTCCCCG GCAAACGCCA CTGCAAGATG
AACATGTACA CCGCCGTCGC CAAGAACGGC AGCTACGAGA TCGTCGAGCG CAGCAAGGGG
CTGGTGGATC CGAAGGAATG CTGA
|
|---|
| Protein sequence | MSSDNKHAFT RRRFLSNFAF AGTAIATGVG SWVVPAGWAN AAAGPIKVGI GTDLTGPMGY
AGNADANVAK MVIKQINDAG GLLGRPIELF IEDTASNEAV AVGNVRKLIQ RDKVDLVVGG
ITSSMRNAIK DVIVSRGKTL YIYPQLYEGK ECTPNLFCTG PTPAQQCDEF IPWLIKNGGK
KFALPSANYV WPHTLNVYAR KVIEANGGEV VLEEYYPLDQ IDFSSTVNRI ISNKVDVVFN
TVIPPGVGPF FKQLYEAGFL KNGGRLACVY YDENTLGINQ PAEIEGLASC LDYFKALTKD
EPFSAKLQAD YEKAFPGNFL FAAGSAATGT YRALKLWEAA VKEAGKIDRD GVAAALDHAK
IAEGPGGPAE MVPGKRHCKM NMYTAVAKNG SYEIVERSKG LVDPKEC
|
|---|
| |