More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_4885 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009074  BURPS668_3067  putative amino acid ABC transporter, periplasmic amino acid-binding protein  78.04 
 
 
435 aa  673    Burkholderia pseudomallei 668  Bacteria  normal  0.656729  n/a   
 
 
-
 
NC_008836  BMA10229_A2565  putative amino acid ABC transporter, periplasmic amino acid-binding protein  77.8 
 
 
435 aa  673    Burkholderia mallei NCTC 10229  Bacteria  decreased coverage  0.000125255  n/a   
 
 
-
 
NC_002947  PP_4841  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  91.69 
 
 
421 aa  815    Pseudomonas putida KT2440  Bacteria  normal  normal  0.365474 
 
 
-
 
NC_012917  PC1_2161  urea ABC transporter, urea binding protein  87.38 
 
 
422 aa  776    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.269161  n/a   
 
 
-
 
NC_003295  RSc2041  putative urea/short-chain amide-binding signal peptide protein  82.05 
 
 
418 aa  664    Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.300905 
 
 
-
 
NC_013421  Pecwa_2500  urea ABC transporter, urea binding protein  86.67 
 
 
422 aa  771    Pectobacterium wasabiae WPP163  Bacteria  normal  0.172849  n/a   
 
 
-
 
NC_010501  PputW619_4633  urea ABC transporter, urea binding protein  92.64 
 
 
421 aa  822    Pseudomonas putida W619  Bacteria  normal  0.688874  normal  0.0837107 
 
 
-
 
NC_004578  PSPTO_4885  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  100 
 
 
421 aa  871    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2176  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein, putative  77.8 
 
 
435 aa  673    Burkholderia mallei ATCC 23344  Bacteria  normal  0.253407  n/a   
 
 
-
 
NC_010622  Bphy_2251  urea ABC transporter, urea binding protein  79.67 
 
 
433 aa  678    Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3500  twin-arginine translocation pathway signal  77.66 
 
 
420 aa  644    Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.421594 
 
 
-
 
NC_007005  Psyr_4426  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  96.67 
 
 
421 aa  847    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.171999 
 
 
-
 
NC_012791  Vapar_4012  urea ABC transporter, urea binding protein  73.92 
 
 
422 aa  648    Variovorax paradoxus S110  Bacteria  normal  0.394915  n/a   
 
 
-
 
NC_007298  Daro_1443  twin-arginine translocation pathway signal  76.68 
 
 
420 aa  662    Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_3103  putative amino acid ABC transporter, periplasmic amino acid-binding protein  78.04 
 
 
435 aa  673    Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0986  twin-arginine translocation pathway signal  79.09 
 
 
418 aa  671    Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1870  urea ABC transporter, urea binding protein  79.33 
 
 
418 aa  677    Ralstonia pickettii 12D  Bacteria  normal  0.510403  normal  0.303887 
 
 
-
 
NC_007434  BURPS1710b_3127  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  78.04 
 
 
435 aa  673    Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0997  twin-arginine translocation pathway signal  74.29 
 
 
427 aa  651    Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0590  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  93.35 
 
 
421 aa  822    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0954  urea ABC transporter, urea binding protein  79.62 
 
 
431 aa  681    Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4014  branched chain amino acid ABC transporter periplasmic ligand-binding protein  79 
 
 
435 aa  678    Burkholderia sp. 383  Bacteria  normal  0.0416471  normal  0.65931 
 
 
-
 
NC_008786  Veis_3211  twin-arginine translocation pathway signal  77.72 
 
 
420 aa  647    Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.35137  normal  0.840301 
 
 
-
 
NC_010465  YPK_2873  urea ABC transporter, urea binding protein  84.32 
 
 
422 aa  750    Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.862041  n/a   
 
 
-
 
NC_007651  BTH_I1504  urea/short-chain amide ABC transporter, periplasmic urea/short-chain amide-binding protein  78.04 
 
 
435 aa  675    Burkholderia thailandensis E264  Bacteria  decreased coverage  0.00196796  n/a   
 
 
-
 
NC_009512  Pput_4719  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  91.45 
 
 
421 aa  813    Pseudomonas putida F1  Bacteria  normal  0.14369  normal  0.0383938 
 
 
-
 
NC_011662  Tmz1t_3931  urea ABC transporter, urea binding protein  78.5 
 
 
417 aa  679    Thauera sp. MZ1T  Bacteria  normal  0.606906  n/a   
 
 
-
 
NC_010159  YpAngola_A1340  urea ABC transporter urea binding protein  84.32 
 
 
422 aa  750    Yersinia pestis Angola  Bacteria  normal  normal  0.231626 
 
 
-
 
NC_007908  Rfer_3381  twin-arginine translocation pathway signal  76.61 
 
 
419 aa  671    Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0701  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  89.55 
 
 
421 aa  795    Pseudomonas mendocina ymp  Bacteria  normal  0.525993  normal 
 
 
-
 
NC_007948  Bpro_1393  twin-arginine translocation pathway signal  74.17 
 
 
428 aa  655    Polaromonas sp. JS666  Bacteria  normal  0.656328  normal  0.386042 
 
 
-
 
NC_007951  Bxe_A3683  branched chain amino acid ABC transporter periplasmic ligand-binding protein  79.67 
 
 
432 aa  682    Burkholderia xenovorans LB400  Bacteria  normal  normal  0.277595 
 
 
-
 
NC_008785  BMASAVP1_A0732  putative amino acid ABC transporter, periplasmic amino acid-binding protein  77.8 
 
 
435 aa  673    Burkholderia mallei SAVP1  Bacteria  normal  0.909457  n/a   
 
 
-
 
NC_010524  Lcho_1084  urea ABC transporter, urea binding protein  75.24 
 
 
425 aa  651    Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009832  Spro_1421  putative substrate-binding periplasmic transport protein  86.16 
 
 
422 aa  762    Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0798  urea ABC transporter, urea binding protein  78.28 
 
 
435 aa  675    Burkholderia ambifaria MC40-6  Bacteria  normal  0.398503  normal 
 
 
-
 
NC_010322  PputGB1_4898  urea ABC transporter, urea binding protein  92.64 
 
 
421 aa  822    Pseudomonas putida GB-1  Bacteria  normal  normal  0.0308389 
 
 
-
 
NC_009656  PSPA7_5579  hypothetical protein  87.89 
 
 
421 aa  784    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2794  urea ABC transporter, urea binding protein  84.09 
 
 
422 aa  748    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0880  urea ABC transporter, urea binding protein  78.28 
 
 
435 aa  675    Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.824913 
 
 
-
 
NC_007973  Rmet_0952  twin-arginine translocation pathway signal  78.55 
 
 
419 aa  671    Cupriavidus metallidurans CH34  Bacteria  normal  0.553309  normal  0.40345 
 
 
-
 
NC_008825  Mpe_A0697  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  79.75 
 
 
425 aa  648    Methylibium petroleiphilum PM1  Bacteria  normal  0.951166  normal 
 
 
-
 
NC_008060  Bcen_0431  twin-arginine translocation pathway signal  78.28 
 
 
435 aa  675    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2193  urea ABC transporter, urea binding protein  79.33 
 
 
418 aa  677    Ralstonia pickettii 12J  Bacteria  normal  normal  0.200796 
 
 
-
 
NC_012912  Dd1591_2746  urea ABC transporter, urea binding protein  86.67 
 
 
423 aa  766    Dickeya zeae Ech1591  Bacteria  normal  0.276837  n/a   
 
 
-
 
NC_008390  Bamb_0787  branched chain amino acid ABC transporter periplasmic ligand-binding protein  78.52 
 
 
435 aa  677    Burkholderia ambifaria AMMD  Bacteria  normal  0.238628  n/a   
 
 
-
 
NC_008463  PA14_64270  hypothetical protein  88.12 
 
 
421 aa  785    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00916173  normal 
 
 
-
 
NC_008542  Bcen2424_0910  ABC-type branched-chain amino acid transport system periplasmic component  78.28 
 
 
435 aa  675    Burkholderia cenocepacia HI2424  Bacteria  normal  0.988343  n/a   
 
 
-
 
NC_010084  Bmul_2482  urea ABC transporter, urea binding protein  78.28 
 
 
435 aa  675    Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_2048  putative amino acid ABC transporter, periplasmic amino acid-binding protein  77.8 
 
 
435 aa  673    Burkholderia mallei NCTC 10247  Bacteria  normal  0.0410415  n/a   
 
 
-
 
NC_009436  Ent638_1988  putative substrate-binding periplasmic transport protein  86.19 
 
 
423 aa  752    Enterobacter sp. 638  Bacteria  normal  normal  0.146215 
 
 
-
 
NC_009379  Pnuc_1202  putative urea/short-chain amide-binding signal peptide protein  73.21 
 
 
419 aa  617  1e-175  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0994  branched-chain amino acid ABC transporter periplasmic substrate-binding protein  76.38 
 
 
454 aa  610  1e-173  Psychrobacter cryohalolentis K5  Bacteria  normal  0.603537  normal 
 
 
-
 
NC_008576  Mmc1_1019  ABC-type branched-chain amino acid transport system, periplasmic component  65.86 
 
 
424 aa  558  1e-158  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.18333 
 
 
-
 
NC_008340  Mlg_0188  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  63.59 
 
 
444 aa  553  1e-156  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0948  branched-chain amino acid ABC transporter, putative  65.78 
 
 
427 aa  541  9.999999999999999e-153  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1443  putative UreA short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor  69.43 
 
 
431 aa  531  1e-150  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000157117 
 
 
-
 
NC_007912  Sde_0226  urea/short-chain amide ABC transporter, periplasmic urea/short-chain amide-binding protein  65.13 
 
 
436 aa  525  1e-148  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.867108 
 
 
-
 
NC_008709  Ping_2986  ABC transporter for branched chain amino acids substrate binding protein  65.61 
 
 
425 aa  527  1e-148  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.199519 
 
 
-
 
NC_007925  RPC_3702  branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor  67.27 
 
 
439 aa  521  1e-147  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_00881  ABC-type branched-chain amino acid transport system, periplasmic component  66.84 
 
 
403 aa  522  1e-147  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1103  urea ABC transporter, urea binding protein  62.32 
 
 
433 aa  520  1e-146  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7018  branched chain amino-acid ABC transporter substrate-binding protein  67.53 
 
 
440 aa  519  1e-146  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.450777 
 
 
-
 
NC_009620  Smed_4184  ABC transporter periplasmic solute-binding protein precursor  64.06 
 
 
430 aa  519  1e-146  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.11561 
 
 
-
 
NC_008255  CHU_1255  branched-chain amino acid ABC transporter, periplasmic protein  59.9 
 
 
445 aa  518  1e-146  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.857524 
 
 
-
 
NC_009720  Xaut_4149  putative urea short-chain amide or branched-chain amino acid uptake ABC transporter  67.36 
 
 
434 aa  521  1e-146  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2620  putative UreA short-chain amide  64.27 
 
 
428 aa  512  1e-144  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0882904 
 
 
-
 
NC_007778  RPB_1794  urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor  66.75 
 
 
440 aa  513  1e-144  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.326487 
 
 
-
 
NC_011004  Rpal_4191  urea ABC transporter, urea binding protein  67.01 
 
 
440 aa  513  1e-144  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4605  urea ABC transporter, urea binding protein  66.75 
 
 
430 aa  510  1e-143  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0446253  n/a   
 
 
-
 
NC_009952  Dshi_2695  putative aliphatic amidase expression-regulating protein  62.35 
 
 
452 aa  509  1e-143  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.92573  normal 
 
 
-
 
NC_007958  RPD_3510  twin-arginine translocation pathway signal  66.49 
 
 
440 aa  509  1e-143  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.118582  normal 
 
 
-
 
NC_008740  Maqu_3001  ABC-type branched-chain amino acid transport system, periplasmic component  63.73 
 
 
433 aa  510  1e-143  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3063  urea ABC transporter, urea binding protein  64.39 
 
 
430 aa  506  9.999999999999999e-143  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.696445 
 
 
-
 
NC_011989  Avi_3494  ABC transporter substrate binding protein (urea/amide)  63.33 
 
 
429 aa  502  1e-141  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3318  urea ABC transporter, urea binding protein  62.93 
 
 
430 aa  497  1e-139  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.490693  normal  0.457641 
 
 
-
 
NC_009428  Rsph17025_0993  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  62.53 
 
 
426 aa  492  9.999999999999999e-139  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1945  ABC branched chain amino acid transporter, substrate binding protein  61.77 
 
 
426 aa  488  1e-136  Rhodobacter sphaeroides ATCC 17029  Bacteria  hitchhiker  0.00107842  normal 
 
 
-
 
NC_007493  RSP_0301  ABC branched chain amino acid transporter, substrate binding protein  61.77 
 
 
426 aa  488  1e-136  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.176929  n/a   
 
 
-
 
NC_007963  Csal_2313  putative urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic protein precursor  58.64 
 
 
443 aa  482  1e-135  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00688905  n/a   
 
 
-
 
NC_008687  Pden_4017  ABC branched chain amino acid transporter, substrate binding protein  61.03 
 
 
428 aa  464  1e-129  Paracoccus denitrificans PD1222  Bacteria  normal  0.568826  normal 
 
 
-
 
NC_010571  Oter_4229  hypothetical protein  55.1 
 
 
426 aa  417  9.999999999999999e-116  Opitutus terrae PB90-1  Bacteria  normal  0.527328  normal  0.405756 
 
 
-
 
NC_009012  Cthe_1823  extracellular ligand-binding receptor  52.08 
 
 
419 aa  415  9.999999999999999e-116  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.158541  n/a   
 
 
-
 
NC_013411  GYMC61_2778  urea ABC transporter, urea binding protein  51.84 
 
 
418 aa  394  1e-108  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_0130  extracellular ligand-binding receptor  52.07 
 
 
423 aa  386  1e-106  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0243473 
 
 
-
 
NC_011729  PCC7424_2862  urea ABC transporter, urea binding protein  51.04 
 
 
443 aa  383  1e-105  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_4361  extracellular ligand-binding receptor  51.32 
 
 
438 aa  373  1e-102  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000367621  normal 
 
 
-
 
NC_011884  Cyan7425_2260  urea ABC transporter, urea binding protein  50 
 
 
440 aa  369  1e-101  Cyanothece sp. PCC 7425  Bacteria  normal  0.411735  normal 
 
 
-
 
NC_013739  Cwoe_3498  urea ABC transporter, urea binding protein  49.74 
 
 
419 aa  365  1e-99  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0969064 
 
 
-
 
NC_013510  Tcur_3240  urea ABC transporter, urea binding protein  48.7 
 
 
405 aa  362  1e-98  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.00360419  n/a   
 
 
-
 
NC_008726  Mvan_2596  extracellular ligand-binding receptor  47.75 
 
 
402 aa  348  1e-94  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.677611 
 
 
-
 
NC_014151  Cfla_0700  urea ABC transporter, urea binding protein  48.67 
 
 
463 aa  345  6e-94  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0172324  hitchhiker  0.0000000649369 
 
 
-
 
NC_008146  Mmcs_2291  extracellular ligand-binding receptor  47.72 
 
 
421 aa  344  1e-93  Mycobacterium sp. MCS  Bacteria  normal  0.553297  n/a   
 
 
-
 
NC_008705  Mkms_2338  extracellular ligand-binding receptor  47.72 
 
 
421 aa  344  1e-93  Mycobacterium sp. KMS  Bacteria  normal  normal  0.267805 
 
 
-
 
NC_013093  Amir_1674  urea ABC transporter, urea binding protein  48.68 
 
 
407 aa  344  2e-93  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2330  extracellular ligand-binding receptor  47.33 
 
 
421 aa  342  5e-93  Mycobacterium sp. JLS  Bacteria  normal  0.26288  normal  0.0264278 
 
 
-
 
NC_009338  Mflv_3798  extracellular ligand-binding receptor  46.68 
 
 
402 aa  341  1e-92  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3780  putative aliphatic amidase expression-regulating protein  42.4 
 
 
404 aa  339  5.9999999999999996e-92  Shewanella woodyi ATCC 51908  Bacteria  normal  0.583472  hitchhiker  0.00053565 
 
 
-
 
NC_008820  P9303_29741  putative urea ABC transporter, substrate binding protein  44.36 
 
 
431 aa  338  9.999999999999999e-92  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_009831  Ssed_3881  putative aliphatic amidase expression-regulating protein  43.95 
 
 
411 aa  337  2.9999999999999997e-91  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
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