| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3881 |
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| Symbol | |
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| ID | 5611042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4737847 |
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| End bp | 4739082 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934835 |
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| Product | putative aliphatic amidase expression-regulating protein |
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| Protein accession | YP_001475613 |
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| Protein GI | 157377013 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAGG AAAGAGAGTT CGCCCTCCAA TGGTATCTCA GCAGATGGAG ATGGTTAGCG
ATAGCCATAC TTTTTGCTAC GGGCATCGTC GCCTGCGGTA CAGAAGATGA TGCCACCATT
AAGGTAGGTA TCTTGCACTC TATGAGCGGC ACTATGGCGT TCAGCGAACG GGATCTGGTC
GATGTGCTCA CCATGGCAAT CGAAGAGATA AATGCCAATG GTGGGGTATT GGGAAGACAG
CTAGAGCCTG TTTTAGCGGA TGGTGCATCG AACTGGTGGC AGTTTTCAAA GGAGGCGGAG
CGACTCATTG TTCAGGAGCG GGTAGCAGTA CTCTTTGGTT GCTGGACCTC GAGTAGCCGT
ATCGCGGTTA AGCCTATTGT TGAACGTTAC GATCATTTGC TCTTCTATCC ACTGCAATAT
GAGGGGCTGG AGCAGTCGCC GAATATTATC TACACGGGCG CCACACCGAA TCAGCAGATC
ATCCCCGGTG TTCACTGGGC GCTGGAAAAT ATCGGCCAGG GCGTCTACCT CCTTGGTTCC
GATTATATCT TTCCCCGAGC CGCGAATATG CTGATTAAAG ATCAGCTGAA AAACCGTGGC
ATAGAGCCTC TGGGGGAGAT GTATCTGCCT ATGGGATCAT CAGATATCTC CCGTGCAATT
GAAGATATTC GCAGGTTAAA GCCGGATCTG GTGTTCAATA CTATTAACGG AGACAGTAAT
ATCGCATTTT TCAATGGTCT GAATGGGATA AAGGAGACCA AGGTGGTCTC ATTCAGCATT
GCCGAACCAG AGGTATCGGC CATCGGCATC GAACAAATGT TGGGGCATTA TGCCGTCTGG
AACTATTTCC AGAGTATAGA AAGCCCGGAG AATCGGCAAT TTGTCAGTGC ATTTAAAGCG
CGCTTCGGTA AAGACCGGGT CGTTAACGAT CCTATGGAGG CAACCTATAT CGGTATTAAG
TTGTGGGTCC AGGGGGTGAC TGCGGCTGGT ACCTTCGATC CACTGAGGGT TAAACATGCC
CTTGGTTATC AGAGTCTCAA TGCGCCTCAA GGTATCGTCT CGGTCGACAT GGGCAGTCAA
CACCTGTGGA AAACGGTCCG CATCGGACGG GTACGAAGCG ATGGACAGTT TGAAATAGTC
TGGCGAAGTG ATTCCCCCAT CAGGCCCACA CCTTTTCCTA AATATCACAG TCGGTCGATC
TGGCTGCAAC GCTTGCAGGA GCTCAAGTAT CGATGA
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| Protein sequence | MAKEREFALQ WYLSRWRWLA IAILFATGIV ACGTEDDATI KVGILHSMSG TMAFSERDLV
DVLTMAIEEI NANGGVLGRQ LEPVLADGAS NWWQFSKEAE RLIVQERVAV LFGCWTSSSR
IAVKPIVERY DHLLFYPLQY EGLEQSPNII YTGATPNQQI IPGVHWALEN IGQGVYLLGS
DYIFPRAANM LIKDQLKNRG IEPLGEMYLP MGSSDISRAI EDIRRLKPDL VFNTINGDSN
IAFFNGLNGI KETKVVSFSI AEPEVSAIGI EQMLGHYAVW NYFQSIESPE NRQFVSAFKA
RFGKDRVVND PMEATYIGIK LWVQGVTAAG TFDPLRVKHA LGYQSLNAPQ GIVSVDMGSQ
HLWKTVRIGR VRSDGQFEIV WRSDSPIRPT PFPKYHSRSI WLQRLQELKY R
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