| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3145 |
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| Symbol | |
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| ID | 7974355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3304752 |
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| End bp | 3306020 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644793730 |
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| Product | urea ABC transporter, urea binding protein |
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| Protein accession | YP_002945030 |
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| Protein GI | 239816120 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.770654 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCGTG ATTCAGAAGA TCTTTCCCTC GATGCCCTGG CATTGCGCCG CCGCCGCTTG
CTGCAGGGCG CCGCCGCGCT GCCCGTGATG GGCCTGTCCG GCCTGAGCTT CGGCCAGTCG
CAGTTCCCCA CGGCCAAGGT CAACAGCACC AAGCTCGCGG TGACCGACAC CGAAGTGACG
GTGGGCCAGC TGCACTCGTC CTCCGGCACC ATGGCCATTT CGGAGACCGG CTCGATCCAG
GCCGAGCAGC TCGCCATCGA CCAGATCAAC GCGATGGGCG GCATCCTCGG GCGCAAGATC
AAGGTCATCA AGGAAGACGG CGCCTCCGAC TGGCCCACCT TTGCCGAGAA GTCGAAGAAG
CTCTTGGTCA ACGACCATTG CGCCGCAGTG TTCGGCTGCT GGACCAGCGC CTCGCGCAAG
GCGGTGCTGC CGGTGTTCGA GAAGGAGAAC GGCCTCCTGT ACTACCCGAC CTTCTACGAA
GGCCTGGAGC AGAGCAAGAA CGTGATCTAC ACGGGCCAGG AAGCCACGCA GCAGATCATC
TGGGGCCTCG ATTGGGGCGC CAAGGAGAAG AAGGCCAAGA CCTTCTTCCT GGTGGGCTCC
GACTACATCT GGCCGCGCAC CTCGATGAAG ATCGCGCGCA AGCACATCGA GAACTTCCAG
AAGGGCTCGG TCAAGGGCGA GGAGTACTAC CCGCTGGGCC ACACCAACTT CAACTCGCTG
ATCAACAAGA TCAAGGTCGC CAAGCCCGAC TGCATCTTCG CGGCGGTGGT GGGCGGCTCG
AACGTGGCCT TCTACAAGCA GCTCAAGGCC GCGGGCATCA CGGGCGACAA GCAGTTCCTG
CTGACGCTGG CCGTCACGGA AGACGAAATG ACCGGGGTGG GCGGCGAGAA CTTCGCGGGC
TTCTATTCGT CGATGAAGTA CTTCCAGTCG CTCGACAACG CGAACAACAA GAAGTTCGTG
GAAGCCTTCA AGGCCAAGTA CGGCAAGGAC GCGGTGATCG GCGACGTCAC GCAGGCCGGC
TACCTCGGCC CGTGGCTCTG GAAGGCGGCG GTGGAGAAGG CCGGCAGCTT CGACGTCGAC
AAGGTGGTGG CCGGCTCGCC GGGTATCGAG CTGAAGACGG CACCTGAAGG CTACGTGAAG
CTGGACGCGA ACCACCATTT GTGGAGCAAG GCGCGCATCG GGCAGGGGCA GCTGGACGGG
ACGTTCAAGG TGGTGGCGGA GTCGGCTGAT TTGATCAAGC CGGATCCGTT TCCCAAGGGA
TACCAATAA
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| Protein sequence | MSRDSEDLSL DALALRRRRL LQGAAALPVM GLSGLSFGQS QFPTAKVNST KLAVTDTEVT
VGQLHSSSGT MAISETGSIQ AEQLAIDQIN AMGGILGRKI KVIKEDGASD WPTFAEKSKK
LLVNDHCAAV FGCWTSASRK AVLPVFEKEN GLLYYPTFYE GLEQSKNVIY TGQEATQQII
WGLDWGAKEK KAKTFFLVGS DYIWPRTSMK IARKHIENFQ KGSVKGEEYY PLGHTNFNSL
INKIKVAKPD CIFAAVVGGS NVAFYKQLKA AGITGDKQFL LTLAVTEDEM TGVGGENFAG
FYSSMKYFQS LDNANNKKFV EAFKAKYGKD AVIGDVTQAG YLGPWLWKAA VEKAGSFDVD
KVVAGSPGIE LKTAPEGYVK LDANHHLWSK ARIGQGQLDG TFKVVAESAD LIKPDPFPKG
YQ
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