More than 300 homologs were found in PanDaTox collection
for query gene Franean1_1677 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_1677  cyclic nucleotide-binding protein  100 
 
 
258 aa  510  1e-144  Frankia sp. EAN1pec  Bacteria  normal  0.506462  normal  0.511537 
 
 
-
 
NC_009921  Franean1_5506  Crp/FNR family transcriptional regulator  41.7 
 
 
246 aa  155  5.0000000000000005e-37  Frankia sp. EAN1pec  Bacteria  normal  0.324567  normal  0.438631 
 
 
-
 
NC_013947  Snas_1232  transcriptional regulator, Crp/Fnr family  38.67 
 
 
235 aa  134  9.999999999999999e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7216  transcriptional regulator, Crp/Fnr family  35 
 
 
246 aa  131  7.999999999999999e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.726682  normal 
 
 
-
 
NC_009953  Sare_0070  cyclic nucleotide-binding protein  35.45 
 
 
227 aa  131  1.0000000000000001e-29  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.376283 
 
 
-
 
NC_013739  Cwoe_0602  transcriptional regulator, Crp/Fnr family  34.56 
 
 
225 aa  129  5.0000000000000004e-29  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.628877 
 
 
-
 
NC_013510  Tcur_1167  transcriptional regulator, Crp/Fnr family  37.39 
 
 
231 aa  128  7.000000000000001e-29  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0781257  n/a   
 
 
-
 
NC_013093  Amir_5511  transcriptional regulator, Crp/Fnr family  37.56 
 
 
227 aa  128  9.000000000000001e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  0.360617  n/a   
 
 
-
 
NC_009953  Sare_1644  Crp/FNR family transcriptional regulator  35.86 
 
 
223 aa  114  1.0000000000000001e-24  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1659  cyclic nucleotide-binding  35.35 
 
 
223 aa  110  2.0000000000000002e-23  Salinispora tropica CNB-440  Bacteria  normal  0.834954  normal 
 
 
-
 
NC_013093  Amir_6844  transcriptional regulator, Crp/Fnr family  30.45 
 
 
235 aa  108  8.000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0901192  n/a   
 
 
-
 
NC_013947  Snas_4977  transcriptional regulator, Crp/Fnr family  34.7 
 
 
234 aa  106  4e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.111601 
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  33.03 
 
 
222 aa  105  5e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1608  putative transcriptional regulator, Crp/Fnr family  35.59 
 
 
248 aa  101  1e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2257  transcriptional regulator, Crp/Fnr family  34.54 
 
 
234 aa  100  2e-20  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00000784359  n/a   
 
 
-
 
NC_013510  Tcur_1118  transcriptional regulator, Crp/Fnr family  32.63 
 
 
240 aa  100  3e-20  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5851  transcriptional regulator, Crp/Fnr family  30.56 
 
 
242 aa  97.8  2e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0930905  n/a   
 
 
-
 
NC_013093  Amir_5850  transcriptional regulator, Crp/Fnr family  32.13 
 
 
223 aa  97.8  2e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0120826  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  32.11 
 
 
225 aa  91.7  1e-17  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  31.58 
 
 
220 aa  89  6e-17  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  31.8 
 
 
225 aa  89  7e-17  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  31.58 
 
 
225 aa  87.4  2e-16  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5783  transcriptional regulator, Crp/Fnr family  32.68 
 
 
212 aa  86.7  3e-16  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00268451  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  29.47 
 
 
224 aa  84.7  0.000000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  31.05 
 
 
226 aa  84  0.000000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  29.79 
 
 
228 aa  83.6  0.000000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  31.58 
 
 
226 aa  83.2  0.000000000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  28.71 
 
 
224 aa  83.2  0.000000000000004  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  33.68 
 
 
225 aa  82.8  0.000000000000005  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  32.12 
 
 
228 aa  81.3  0.00000000000001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  29.95 
 
 
225 aa  80.5  0.00000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  29.95 
 
 
226 aa  81.3  0.00000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  26.13 
 
 
226 aa  80.1  0.00000000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  29.95 
 
 
225 aa  80.1  0.00000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6885  putative transcriptional regulator, Crp/Fnr family  29.55 
 
 
240 aa  79.7  0.00000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  29.32 
 
 
225 aa  77.8  0.0000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  26.42 
 
 
230 aa  77.4  0.0000000000002  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  28.92 
 
 
225 aa  77.4  0.0000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  28.71 
 
 
225 aa  77.4  0.0000000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  25.45 
 
 
231 aa  77.4  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  29.47 
 
 
228 aa  76.3  0.0000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  28.51 
 
 
228 aa  76.6  0.0000000000004  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  27.27 
 
 
239 aa  75.9  0.0000000000006  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.9 
 
 
242 aa  75.9  0.0000000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  26.42 
 
 
230 aa  75.5  0.0000000000008  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  27.8 
 
 
229 aa  75.1  0.000000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  27.47 
 
 
249 aa  73.2  0.000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  30.41 
 
 
261 aa  73.2  0.000000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  26.21 
 
 
226 aa  73.2  0.000000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  28.02 
 
 
226 aa  72.8  0.000000000005  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  28.5 
 
 
224 aa  72.4  0.000000000007  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  29.38 
 
 
226 aa  72  0.000000000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_009921  Franean1_0328  Crp/FNR family transcriptional regulator  33.33 
 
 
246 aa  72  0.000000000009  Frankia sp. EAN1pec  Bacteria  normal  0.0277272  normal  0.0570772 
 
 
-
 
NC_007777  Francci3_4286  Crp/FNR family transcriptional regulator  33.33 
 
 
241 aa  71.2  0.00000000001  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  29.59 
 
 
224 aa  71.2  0.00000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  27.32 
 
 
257 aa  71.6  0.00000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_011830  Dhaf_2762  transcriptional regulator, Crp/Fnr family  26.11 
 
 
234 aa  71.2  0.00000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  30.43 
 
 
224 aa  71.6  0.00000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_013159  Svir_26880  cAMP-binding protein  30.73 
 
 
225 aa  70.9  0.00000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.452605 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  24.19 
 
 
222 aa  70.1  0.00000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  26.17 
 
 
222 aa  70.5  0.00000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_011887  Mnod_8112  transcriptional regulator, Crp/Fnr family  25.11 
 
 
229 aa  70.1  0.00000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  26.92 
 
 
235 aa  69.3  0.00000000005  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  28.5 
 
 
224 aa  69.7  0.00000000005  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  28.5 
 
 
224 aa  69.7  0.00000000005  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  28.5 
 
 
224 aa  69.7  0.00000000005  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  28.87 
 
 
224 aa  69.3  0.00000000006  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  28.5 
 
 
224 aa  69.3  0.00000000006  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  24.76 
 
 
239 aa  68.9  0.00000000007  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013131  Caci_8335  putative transcriptional regulator, Crp/Fnr family  28.8 
 
 
209 aa  68.9  0.00000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.339186  normal 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  28.5 
 
 
224 aa  68.9  0.00000000008  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  28.5 
 
 
224 aa  68.6  0.00000000009  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  26.7 
 
 
234 aa  68.6  0.00000000009  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  23.96 
 
 
231 aa  68.2  0.0000000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  26.88 
 
 
225 aa  68.2  0.0000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  29.47 
 
 
224 aa  68.2  0.0000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  23.96 
 
 
231 aa  68.2  0.0000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2683  transcriptional regulator, Crp/Fnr family  28.84 
 
 
236 aa  67.4  0.0000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.168298 
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  26.92 
 
 
229 aa  67.8  0.0000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  24.4 
 
 
225 aa  66.2  0.0000000005  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  25.25 
 
 
223 aa  66.2  0.0000000005  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010815  Glov_3725  transcriptional regulator, Crp/Fnr family  27.27 
 
 
237 aa  65.9  0.0000000007  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0054318  normal  0.342144 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  23.83 
 
 
227 aa  65.9  0.0000000007  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  27.75 
 
 
227 aa  65.5  0.0000000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  23.72 
 
 
234 aa  65.5  0.0000000009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  27.57 
 
 
226 aa  65.5  0.0000000009  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  28.9 
 
 
236 aa  65.5  0.0000000009  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  27.69 
 
 
252 aa  65.1  0.000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  25.87 
 
 
247 aa  63.9  0.000000002  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  25 
 
 
235 aa  64.3  0.000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  24.32 
 
 
231 aa  63.9  0.000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5695  cyclic nucleotide-binding protein  28.3 
 
 
233 aa  64.3  0.000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.0746044  normal 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  27.06 
 
 
226 aa  64.7  0.000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  22.16 
 
 
236 aa  64.3  0.000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  25 
 
 
261 aa  64.3  0.000000002  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_011992  Dtpsy_0976  transcriptional regulator, Crp/Fnr family  25.71 
 
 
258 aa  64.3  0.000000002  Acidovorax ebreus TPSY  Bacteria  normal  0.859751  n/a   
 
 
-
 
NC_008782  Ajs_1058  CRP/FNR family transcriptional regulator  25.71 
 
 
258 aa  64.3  0.000000002  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  24.04 
 
 
232 aa  63.9  0.000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_010002  Daci_3287  Crp/FNR family transcriptional regulator  25.33 
 
 
239 aa  63.9  0.000000003  Delftia acidovorans SPH-1  Bacteria  normal  0.370075  normal  0.683237 
 
 
-
 
NC_007948  Bpro_2959  Crp/FNR family transcriptional regulator  24.78 
 
 
241 aa  63.2  0.000000004  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
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