More than 300 homologs were found in PanDaTox collection
for query gene Francci3_1543 on replicon NC_007777
Organism: Frankia sp. CcI3



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_1543  LuxR family transcriptional regulator  100 
 
 
156 aa  316  7.999999999999999e-86  Frankia sp. CcI3  Bacteria  normal  0.24149  normal 
 
 
-
 
NC_007777  Francci3_1536  LuxR family transcriptional regulator  53.85 
 
 
357 aa  99  2e-20  Frankia sp. CcI3  Bacteria  normal  0.413488  normal 
 
 
-
 
NC_009921  Franean1_4194  LuxR family GAF modulated transcriptional regulator  46.43 
 
 
285 aa  94.7  4e-19  Frankia sp. EAN1pec  Bacteria  normal  0.0104113  normal 
 
 
-
 
NC_014165  Tbis_2084  LuxR family transcriptional regulator  44.14 
 
 
288 aa  82  0.000000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2809  regulatory protein, LuxR  38.53 
 
 
286 aa  68.9  0.00000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1620  LuxR family transcriptional regulator  42.34 
 
 
287 aa  67.8  0.00000000006  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_4025  LuxR family transcriptional regulator  37.84 
 
 
300 aa  65.9  0.0000000002  Frankia sp. CcI3  Bacteria  normal  0.449136  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  35.16 
 
 
226 aa  65.9  0.0000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_014158  Tpau_3743  transcriptional regulator, LuxR family  52.17 
 
 
286 aa  65.9  0.0000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_0625  two component transcriptional regulator, LuxR family  51.56 
 
 
216 aa  65.9  0.0000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.732521  normal 
 
 
-
 
NC_008726  Mvan_1565  response regulator receiver protein  40.19 
 
 
281 aa  65.1  0.0000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0947  LuxR family transcriptional regulator  48.61 
 
 
799 aa  64.3  0.0000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  40.21 
 
 
220 aa  64.3  0.0000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013235  Namu_0608  two component transcriptional regulator, LuxR family  40.22 
 
 
228 aa  63.2  0.000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  39.8 
 
 
219 aa  62.4  0.000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  38.32 
 
 
234 aa  62.8  0.000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  47.22 
 
 
220 aa  62.8  0.000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  48.61 
 
 
220 aa  62.4  0.000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  39.8 
 
 
219 aa  62.4  0.000000002  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  35.2 
 
 
227 aa  62  0.000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_008146  Mmcs_4439  ATP-dependent transcription regulator LuxR  53.57 
 
 
285 aa  62  0.000000003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4526  putative GAF sensor protein  53.57 
 
 
285 aa  62  0.000000003  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4820  putative GAF sensor protein  53.57 
 
 
285 aa  62  0.000000003  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_4865  response regulator receiver protein  35.25 
 
 
281 aa  62  0.000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0959639 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  39.8 
 
 
220 aa  62  0.000000003  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  55.74 
 
 
225 aa  62  0.000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  47.06 
 
 
221 aa  61.6  0.000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.133182 
 
 
-
 
NC_012669  Bcav_2482  two component transcriptional regulator, LuxR family  50 
 
 
208 aa  61.6  0.000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0211915  normal  0.642006 
 
 
-
 
NC_014210  Ndas_2190  two component transcriptional regulator, LuxR family  52.46 
 
 
218 aa  61.6  0.000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000643495  hitchhiker  0.000215707 
 
 
-
 
NC_008781  Pnap_4084  two component LuxR family transcriptional regulator  42.67 
 
 
246 aa  61.6  0.000000004  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  51.47 
 
 
222 aa  61.2  0.000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  40.59 
 
 
224 aa  61.2  0.000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal 
 
 
-
 
NC_009439  Pmen_3658  regulatory protein, LuxR  52.31 
 
 
914 aa  61.2  0.000000005  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  39.58 
 
 
225 aa  61.2  0.000000005  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_009523  RoseRS_0474  response regulator receiver protein  49.21 
 
 
471 aa  60.8  0.000000007  Roseiflexus sp. RS-1  Bacteria  normal  0.40168  normal  0.0487434 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  48.61 
 
 
213 aa  60.8  0.000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0500394 
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  48.57 
 
 
212 aa  60.8  0.000000007  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  51.52 
 
 
212 aa  60.5  0.000000008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_4208  ATP-dependent transcription regulator LuxR  54.1 
 
 
894 aa  60.5  0.000000009  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  35.2 
 
 
224 aa  60.5  0.000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_014151  Cfla_3337  two component transcriptional regulator, LuxR family  47.69 
 
 
254 aa  60.5  0.000000009  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0952095  normal  0.130531 
 
 
-
 
NC_013159  Svir_38740  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  49.18 
 
 
250 aa  60.5  0.000000009  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3998  response regulator receiver protein  49.23 
 
 
233 aa  60.5  0.000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.363745  normal  0.263649 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  39.18 
 
 
219 aa  59.7  0.00000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  37.89 
 
 
215 aa  59.7  0.00000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_008148  Rxyl_2946  LuxR family transcriptional regulator  47.14 
 
 
781 aa  59.7  0.00000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  38.95 
 
 
239 aa  59.7  0.00000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_009972  Haur_0710  two component LuxR family transcriptional regulator  37.5 
 
 
240 aa  59.7  0.00000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2452  response regulator receiver protein  45 
 
 
151 aa  59.7  0.00000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.843497  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  43.66 
 
 
229 aa  60.1  0.00000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  36.64 
 
 
239 aa  59.3  0.00000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0541  two component transcriptional regulator, LuxR family  39.78 
 
 
221 aa  58.9  0.00000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.318618  normal 
 
 
-
 
NC_008146  Mmcs_1056  two component LuxR family transcriptional regulator  51.67 
 
 
219 aa  59.3  0.00000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0042  nitrate/nitrite response regulator protein  34.38 
 
 
209 aa  59.7  0.00000002  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19850  putative transcriptional regulator  52.46 
 
 
827 aa  58.9  0.00000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.326832  normal 
 
 
-
 
NC_008705  Mkms_1072  two component LuxR family transcriptional regulator  51.67 
 
 
219 aa  59.3  0.00000002  Mycobacterium sp. KMS  Bacteria  normal  0.562029  normal  0.0679961 
 
 
-
 
NC_008726  Mvan_3766  response regulator receiver protein  42.17 
 
 
539 aa  58.9  0.00000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.484632  normal  0.834357 
 
 
-
 
NC_009077  Mjls_1083  two component LuxR family transcriptional regulator  51.67 
 
 
219 aa  59.3  0.00000002  Mycobacterium sp. JLS  Bacteria  normal  0.605869  normal 
 
 
-
 
NC_009338  Mflv_5014  two component LuxR family transcriptional regulator  52.46 
 
 
209 aa  59.3  0.00000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.103708  normal  0.29037 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  43.18 
 
 
235 aa  59.3  0.00000002  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal 
 
 
-
 
NC_009656  PSPA7_1706  transcriptional regulator  47.89 
 
 
827 aa  59.3  0.00000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5878  two component transcriptional regulator, LuxR family  52.46 
 
 
441 aa  59.3  0.00000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.464013 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  50.82 
 
 
224 aa  58.9  0.00000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  46.27 
 
 
206 aa  58.9  0.00000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  46.38 
 
 
231 aa  58.5  0.00000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_011726  PCC8801_2623  two component transcriptional regulator, LuxR family  43.84 
 
 
210 aa  58.9  0.00000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  35.45 
 
 
247 aa  58.5  0.00000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_011729  PCC7424_1418  two component transcriptional regulator, LuxR family  47.54 
 
 
249 aa  58.9  0.00000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_3592  two component transcriptional regulator, LuxR family  49.23 
 
 
235 aa  58.5  0.00000003  Variovorax paradoxus S110  Bacteria  normal  0.356082  n/a   
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  46.38 
 
 
217 aa  58.9  0.00000003  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_013235  Namu_0651  two component transcriptional regulator, LuxR family  38 
 
 
241 aa  58.9  0.00000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_3480  two component transcriptional regulator, LuxR family  43.84 
 
 
210 aa  58.9  0.00000003  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.147525 
 
 
-
 
NC_007947  Mfla_0447  two component LuxR family transcriptional regulator  38.71 
 
 
244 aa  58.2  0.00000004  Methylobacillus flagellatus KT  Bacteria  normal  0.013193  normal  0.6128 
 
 
-
 
NC_014151  Cfla_0648  two component transcriptional regulator, LuxR family  45.83 
 
 
211 aa  58.2  0.00000004  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0377209  hitchhiker  0.00104431 
 
 
-
 
NC_013235  Namu_3459  ATP-dependent transcriptional regulator, MalT- like, LuxR family  41.79 
 
 
901 aa  58.2  0.00000004  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.000984222  hitchhiker  0.00326143 
 
 
-
 
NC_013530  Xcel_3277  transcriptional regulator, LuxR family  43.21 
 
 
970 aa  58.2  0.00000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.737282  n/a   
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  35.51 
 
 
225 aa  58.2  0.00000004  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_009439  Pmen_1136  regulatory protein, LuxR  50.82 
 
 
868 aa  58.5  0.00000004  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.87643 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  43.75 
 
 
235 aa  58.2  0.00000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_007005  Psyr_0993  regulatory protein, LuxR  50.82 
 
 
920 aa  57.8  0.00000005  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.962183  normal 
 
 
-
 
NC_007413  Ava_0661  two component LuxR family transcriptional regulator  46.15 
 
 
239 aa  58.2  0.00000005  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.0000223942  normal  0.0624831 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  32.03 
 
 
226 aa  57.8  0.00000005  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013093  Amir_6962  two component transcriptional regulator, LuxR family  43.06 
 
 
234 aa  57.8  0.00000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  47.76 
 
 
215 aa  58.2  0.00000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  41.76 
 
 
211 aa  57.8  0.00000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  45.83 
 
 
227 aa  57.8  0.00000006  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_004578  PSPTO_1151  transcriptional regulator, LuxR family  44.74 
 
 
910 aa  57.8  0.00000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  44.29 
 
 
224 aa  57.8  0.00000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5165  two component LuxR family transcriptional regulator  43.04 
 
 
231 aa  57.8  0.00000006  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.162111 
 
 
-
 
NC_009767  Rcas_4222  ATP-dependent transcription regulator LuxR  50 
 
 
309 aa  57.8  0.00000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.157864 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  34.58 
 
 
230 aa  57.8  0.00000006  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0767  LuxR family transcriptional regulator  44 
 
 
905 aa  57.4  0.00000007  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2575  ATP-dependent transcriptional regulator, MalT-like, LuxR family  40.66 
 
 
917 aa  57.4  0.00000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1558  two component LuxR family transcriptional regulator  46.03 
 
 
240 aa  57.4  0.00000007  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142258 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.24 
 
 
226 aa  57.4  0.00000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5428  two component transcriptional regulator, LuxR family  49.23 
 
 
201 aa  57.4  0.00000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358603 
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  47.22 
 
 
225 aa  57.4  0.00000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_009512  Pput_0794  regulatory protein, LuxR  44 
 
 
905 aa  57.4  0.00000007  Pseudomonas putida F1  Bacteria  normal  normal  0.23816 
 
 
-
 
NC_009767  Rcas_0145  LuxR family transcriptional regulator  46.03 
 
 
454 aa  57.4  0.00000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3541  two component transcriptional regulator, LuxR family  47.76 
 
 
211 aa  57  0.00000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.485125  normal  0.513005 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>