More than 300 homologs were found in PanDaTox collection
for query gene Rcas_4222 on replicon NC_009767
Organism: Roseiflexus castenholzii DSM 13941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009767  Rcas_4222  ATP-dependent transcription regulator LuxR  100 
 
 
309 aa  622  1e-177  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.157864 
 
 
-
 
NC_009972  Haur_1728  ATP-dependent transcription regulator LuxR  44.59 
 
 
870 aa  116  6e-25  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20540  regulatory protein LuxR  45.8 
 
 
887 aa  115  6.9999999999999995e-25  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1995  ATP-dependent transcription regulator LuxR  32.23 
 
 
1019 aa  108  1e-22  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.686742  n/a   
 
 
-
 
NC_013757  Gobs_1678  ATP-dependent transcriptional regulator, MalT- like, LuxR family  31.56 
 
 
910 aa  100  4e-20  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0892  ATP-dependent transcriptional regulator-like protein protein  37.5 
 
 
896 aa  100  4e-20  Methylibium petroleiphilum PM1  Bacteria  normal  0.311866  normal 
 
 
-
 
NC_008826  Mpe_B0601  ATP-dependent transcriptional regulator-like protein protein  39.51 
 
 
901 aa  100  4e-20  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.00000493174 
 
 
-
 
NC_007348  Reut_B3606  LuxR transcriptional regulator  38.06 
 
 
947 aa  97.8  2e-19  Ralstonia eutropha JMP134  Bacteria  normal  0.156001  n/a   
 
 
-
 
NC_009767  Rcas_4327  ATP-dependent transcription regulator LuxR  33.61 
 
 
1021 aa  97.4  3e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0897  ATP-dependent transcriptional regulator-like protein protein  35.42 
 
 
933 aa  97.1  4e-19  Methylibium petroleiphilum PM1  Bacteria  normal  0.571021  normal 
 
 
-
 
NC_009523  RoseRS_2963  regulatory protein, LuxR  39.77 
 
 
824 aa  91.3  2e-17  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5436  LuxR family LuxR family transcriptional regulator  37.42 
 
 
904 aa  88.6  1e-16  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1148  regulatory protein LuxR  29.44 
 
 
921 aa  86.7  4e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.108504  normal 
 
 
-
 
NC_009656  PSPA7_3548  transcriptional regulator  40 
 
 
924 aa  85.9  9e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1936  ATP-dependent transcription regulator LuxR  42.14 
 
 
880 aa  85.1  0.000000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.443116  hitchhiker  0.000000309593 
 
 
-
 
NC_009972  Haur_1506  ATP-dependent transcription regulator LuxR  30.86 
 
 
876 aa  84.3  0.000000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_41810  putative transcriptional regulator  39.33 
 
 
901 aa  85.1  0.000000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1210  ATP-dependent transcription regulator LuxR  33.02 
 
 
889 aa  84  0.000000000000003  Burkholderia sp. 383  Bacteria  normal  0.603589  normal 
 
 
-
 
NC_013525  Tter_0530  transcriptional regulator, LuxR family  60 
 
 
217 aa  83.2  0.000000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007908  Rfer_0996  ATP-dependent transcription regulator LuxR  36.24 
 
 
930 aa  82.4  0.000000000000009  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4706  ATP-dependent transcription regulator LuxR  38.69 
 
 
911 aa  81.3  0.00000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.157543 
 
 
-
 
NC_009972  Haur_1895  ATP-dependent transcription regulator LuxR  37.98 
 
 
867 aa  81.6  0.00000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.283939  n/a   
 
 
-
 
NC_008740  Maqu_1584  regulatory protein, LuxR  34.15 
 
 
916 aa  81.6  0.00000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1418  two component transcriptional regulator, LuxR family  41.44 
 
 
249 aa  80.1  0.00000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013235  Namu_0423  ATP-dependent transcriptional regulator, MalT- like, LuxR family  33.78 
 
 
1003 aa  80.1  0.00000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2693  regulatory protein, LuxR  42.59 
 
 
891 aa  79.7  0.00000000000006  Marinobacter aquaeolei VT8  Bacteria  normal  0.602772  n/a   
 
 
-
 
NC_011831  Cagg_2575  ATP-dependent transcriptional regulator, MalT-like, LuxR family  36.03 
 
 
917 aa  79.3  0.00000000000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4518  two component LuxR family transcriptional regulator  67.21 
 
 
236 aa  78.6  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2511  two component LuxR family transcriptional regulator  58.46 
 
 
229 aa  78.6  0.0000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1186  transcriptional regulator  35.12 
 
 
906 aa  78.6  0.0000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4096  two component LuxR family transcriptional regulator  61.29 
 
 
237 aa  77.8  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.811447  normal  0.807841 
 
 
-
 
NC_011884  Cyan7425_4561  two component transcriptional regulator, LuxR family  63.93 
 
 
217 aa  78.2  0.0000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1558  two component LuxR family transcriptional regulator  50.68 
 
 
240 aa  77  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142258 
 
 
-
 
NC_007492  Pfl01_0907  ATP-dependent transcription regulator LuxR  53.62 
 
 
850 aa  77.4  0.0000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2367  two component transcriptional regulator, LuxR family  56.45 
 
 
226 aa  77.4  0.0000000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2417  two component transcriptional regulator, LuxR family  56.45 
 
 
226 aa  77.4  0.0000000000003  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_13150  putative transcriptional regulator  33.66 
 
 
906 aa  77.4  0.0000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.697366  normal 
 
 
-
 
NC_009439  Pmen_2539  regulatory protein, LuxR  43.36 
 
 
904 aa  77  0.0000000000003  Pseudomonas mendocina ymp  Bacteria  normal  0.50873  hitchhiker  0.00362349 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  55.71 
 
 
226 aa  77  0.0000000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_008825  Mpe_A2916  ATP-dependent transcriptional regulator-like protein protein  35.54 
 
 
905 aa  76.6  0.0000000000005  Methylibium petroleiphilum PM1  Bacteria  normal  0.725762  normal 
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  56.52 
 
 
230 aa  76.6  0.0000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_1053  two component transcriptional regulator, LuxR family  61.29 
 
 
236 aa  76.6  0.0000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.295708  normal  0.0294181 
 
 
-
 
NC_009439  Pmen_3658  regulatory protein, LuxR  38.41 
 
 
914 aa  76.3  0.0000000000006  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4815  ATP-dependent transcription regulator LuxR  33.33 
 
 
924 aa  76.3  0.0000000000007  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_2246  ATP-dependent transcription regulator LuxR  30.3 
 
 
914 aa  75.9  0.0000000000008  Frankia sp. CcI3  Bacteria  normal  0.220145  normal  0.0496967 
 
 
-
 
NC_014248  Aazo_0930  LuxR family two component transcriptional regulator  56.45 
 
 
240 aa  75.9  0.0000000000008  'Nostoc azollae' 0708  Bacteria  normal  0.545376  n/a   
 
 
-
 
NC_004578  PSPTO_1151  transcriptional regulator, LuxR family  44.83 
 
 
910 aa  75.5  0.000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_5070  two component transcriptional regulator, LuxR family  57.35 
 
 
210 aa  75.1  0.000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.744929 
 
 
-
 
NC_011884  Cyan7425_4554  two component transcriptional regulator, LuxR family  48.75 
 
 
245 aa  75.5  0.000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.376132  normal  0.833141 
 
 
-
 
NC_007413  Ava_0661  two component LuxR family transcriptional regulator  59.02 
 
 
239 aa  74.7  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.0000223942  normal  0.0624831 
 
 
-
 
NC_007974  Rmet_5822  LuxR family transcriptional regulator  34.23 
 
 
914 aa  74.3  0.000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0164  response regulator receiver protein  54.69 
 
 
128 aa  74.3  0.000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3477  ATP-dependent transcription regulator LuxR  29.45 
 
 
877 aa  75.1  0.000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2623  two component transcriptional regulator, LuxR family  62.3 
 
 
210 aa  73.9  0.000000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3480  two component transcriptional regulator, LuxR family  62.3 
 
 
210 aa  73.9  0.000000000003  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.147525 
 
 
-
 
NC_002947  PP_0767  LuxR family transcriptional regulator  49.32 
 
 
905 aa  73.6  0.000000000004  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  37.13 
 
 
226 aa  73.6  0.000000000004  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_008148  Rxyl_0882  LuxR family transcriptional regulator  56.92 
 
 
253 aa  73.6  0.000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  55.38 
 
 
217 aa  73.6  0.000000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  57.33 
 
 
226 aa  73.6  0.000000000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0794  regulatory protein, LuxR  49.32 
 
 
905 aa  73.6  0.000000000004  Pseudomonas putida F1  Bacteria  normal  normal  0.23816 
 
 
-
 
NC_008463  PA14_19850  putative transcriptional regulator  39.47 
 
 
827 aa  72.8  0.000000000008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.326832  normal 
 
 
-
 
NC_007511  Bcep18194_B3046  ATP-dependent transcription regulator LuxR  33.77 
 
 
922 aa  72.4  0.000000000009  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3567  ATP-dependent transcription regulator LuxR  32.03 
 
 
251 aa  72.4  0.000000000009  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_2840  LuxR family two component transcriptional regulator  53.03 
 
 
238 aa  71.6  0.00000000001  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C6753  ATP-dependent transcription regulator LuxR  32.52 
 
 
932 aa  72  0.00000000001  Burkholderia sp. 383  Bacteria  normal  normal  0.449288 
 
 
-
 
NC_007950  Bpro_5308  ATP-dependent transcription regulator LuxR  38.52 
 
 
397 aa  72  0.00000000001  Polaromonas sp. JS666  Bacteria  normal  0.418046  normal 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  59.7 
 
 
216 aa  71.6  0.00000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_010501  PputW619_4422  ATP-dependent transcription regulator LuxR  49.25 
 
 
905 aa  72  0.00000000001  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  59.68 
 
 
230 aa  71.2  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  57.14 
 
 
211 aa  71.6  0.00000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_007348  Reut_B4759  regulatory protein, LuxR  32.72 
 
 
913 aa  71.2  0.00000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1393  ATP-dependent transcription regulator LuxR  31.74 
 
 
913 aa  71.6  0.00000000002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0644  response regulator receiver domain protein  49.41 
 
 
261 aa  71.6  0.00000000002  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.520039 
 
 
-
 
NC_010322  PputGB1_0808  ATP-dependent transcription regulator LuxR  52.38 
 
 
905 aa  71.2  0.00000000002  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  49.43 
 
 
227 aa  71.6  0.00000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  47.73 
 
 
242 aa  71.2  0.00000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_007005  Psyr_0993  regulatory protein, LuxR  35.86 
 
 
920 aa  70.9  0.00000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.962183  normal 
 
 
-
 
NC_011729  PCC7424_0164  two component transcriptional regulator, LuxR family  48.61 
 
 
234 aa  70.5  0.00000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0441129 
 
 
-
 
NC_009656  PSPA7_1706  transcriptional regulator  51.56 
 
 
827 aa  70.9  0.00000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7346  two component transcriptional regulator, LuxR family  47.62 
 
 
211 aa  70.5  0.00000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0451998 
 
 
-
 
NC_012669  Bcav_2482  two component transcriptional regulator, LuxR family  55.74 
 
 
208 aa  69.7  0.00000000005  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0211915  normal  0.642006 
 
 
-
 
NC_007410  Ava_B0029  two component LuxR family transcriptional regulator  52.38 
 
 
220 aa  69.7  0.00000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  0.268532  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  58.21 
 
 
224 aa  70.1  0.00000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  54.84 
 
 
208 aa  69.3  0.00000000008  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  50 
 
 
224 aa  68.9  0.00000000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3654  two component LuxR family transcriptional regulator  52.63 
 
 
221 aa  68.9  0.0000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000210563  n/a   
 
 
-
 
NC_013235  Namu_5237  ATP-dependent transcriptional regulator, MalT- like, LuxR family  37.04 
 
 
846 aa  68.6  0.0000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  49.33 
 
 
222 aa  68.6  0.0000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4346  ATP-dependent transcription regulator LuxR  36.52 
 
 
921 aa  68.6  0.0000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.815962  normal 
 
 
-
 
NC_007908  Rfer_4208  ATP-dependent transcription regulator LuxR  40.17 
 
 
894 aa  68.9  0.0000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_3055  response regulator receiver  51.56 
 
 
219 aa  68.9  0.0000000001  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0857  two component transcriptional regulator, LuxR family  58.73 
 
 
219 aa  68.6  0.0000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0762303  normal 
 
 
-
 
NC_008061  Bcen_5027  ATP-dependent transcription regulator LuxR  36.52 
 
 
921 aa  68.9  0.0000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.381332  n/a   
 
 
-
 
NC_008543  Bcen2424_5833  ATP-dependent transcription regulator LuxR  36.52 
 
 
921 aa  68.9  0.0000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_38740  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  58.06 
 
 
250 aa  68.6  0.0000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  50 
 
 
223 aa  68.9  0.0000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  44.16 
 
 
216 aa  68.9  0.0000000001  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
CP001637  EcDH1_0295  ATP-dependent transcriptional regulator, MalT-like, LuxR family  32.68 
 
 
901 aa  68.2  0.0000000002  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  56.25 
 
 
232 aa  68.2  0.0000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
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