| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1136 |
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| Symbol | |
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| ID | 5108109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1278464 |
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| End bp | 1281070 |
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| Gene Length | 2607 bp |
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| Protein Length | 868 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640502360 |
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| Product | regulatory protein, LuxR |
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| Protein accession | YP_001186635 |
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| Protein GI | 146306170 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.87643 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACCC TTGCCCTTGC CCGCTCCAAT GCGGTTCCGG CACCGTCTGC CGACCTGCCG
CGGCTGCCGC CCGCGGTGAT TTCGCGATTG CCGCTCGAGC AGCGCCTGCT CGCCAGCGAA
GCCCGTTTGC GCCTGCTCTG CGCGCCGGCC GGTGCCGGCA AGAGCGTGCT GCTCGGTCAG
TGCGCGCGCC AGACGCCCGC CGCCGTGGCG CGGCTGTGGC TGGATCTGGG CGGGCGCAGC
CTGACCCCGG CGCAGCTCTG CACGCGCCTG GCGGCGGCCT TGCAGCAGCC TGCGACCGAC
GTGAACGAGG CGGCCCTGCT GGAAATGCTG CAGGCGCATT CGGGGCGGCT GTGGATCTTT
CTCGACGATT ACCCGCGCCA GCCCGATGGC GAACTCGATG CCTGCCTCGA CCGGCTGTTC
GCTGCGGCGC CGGCGCAGAT CACCTGGTGG GTGGCCAGCC GCCGCACGCC GGCCTGGAAC
CTGCCGCGCC TGCTGCTGCA GGGCGATCTG CTGGAGCTCG AAGGGCAGGA CCTGGCGCTG
GACGAGGTGG GGCTGGCCGA GCTGCTGACG GCGCTGCAGC TGAACCTGGG TGAGGACCTC
GGGCAGCGAT TGCTGCAAAG CAGCGAAGGT TGGCTGGCGG CGATTCGCCT GCTGCTGCTC
GATGCCGACG AGGATGCGTT GCGCCAGCGT CTGCAGGCCG GCTGCCCGCT GCTGCGCGAC
TACGTGCAGC GCGAGGTGCT GGCCGATCTG GATGACGAAC TGCGTAGCGA CCTGCACGCC
CTGGCCCTGC TGCCACGCTT TTCCGCCCCG CTCTGCGAGC ACCTGCTGGA AGGGCGCGGC
AGCGAGCTGC TGGCCGAGCT GCAGCGACGC CAGCTGTTCG TTCGCCGGCT GGACAGCAGC
GGCACCTGGT TCCGTCTGTG GCGCCCTCTG GCTGCGGTGC TGCGCAGCCT GCCTGGTGGG
CTGGTGCCGG CGCCGGTGCA TGTGCGCGCC TGCCAGTGGT TCGCCCGCCA CGGCGACATT
CGCGAGGCGG TCGAGCATGC CCTGCAGGCC GGCCAGGTGG AGGTGGCGGT CAACTACCTG
CAGCGTTTCA GTCAGGAGCA GCTGCTGCAG GGGCATTCGG TCGCGCAGCT CCTGCAATGG
CGCGAGGAGC TGCCGGCCTG GCTGTTCGCC AGCTCGCCGC GGCTGATCGT ATTGCAGGCC
TGGGCGCTGA TCATCTGTGC ACGTTTCGAC GAGGCGCGCG CCTGCACCGA GGCGCTGACG
CACTTTCTGC CGCAGCCCGA TGCCAGGCGC CAACGCAAGC TGCTCGCTCA CTGGCAGGCG
CTCAGCGGCG TGCTGGCGCG CCAGTGCGGG CGCCGCGACG CACGCCAGCA CTGCCTGGAG
GCGCTGCAGG CACTGGACGA CAGCGGCTGG TCGCAGCGCA TCCTCTGCTA CCAGGCCCTG
GCCCAGCAGT ACCTGGCGGA AAACGCCCTG GACCAGGCGC GGCAGGCGCT GGATGAAGGG
CTGCGGCTGT CGCGCCTGCA CGGCAGCCTG ATCTACGAGG CGCTGCTCAA TACCGACCGC
TGCCTGCTGC TGGAGATGCA GGGCGAGGCC GGACGCGCCG CGGAGCTGGC CGAGCAATCG
CTGACGCTGC TGCGTGGGCG GGTCAGCCAC AGCCCGGTGG TCGGTCGCCT GCTGCTGCTG
CGTGCCAGCC TGCTGGCGCG CCAGGGCCTG GACGAGACGG CGCGGCAGGC CTATCGCCAG
GGGTTGCAGG AAGCCGAGTT CTGCGAGGAT GCCTACACCA TCTCCGGCTA CCTGGGGCAG
GTGGAGCTGG CCGAGGCGTG CGGCGATCTC GACGAGGCCT ACCAGTGGTT GCAGAAGGCC
GAGCGGGTGA TGCAGTGCTC GCACGTGCCG GAGGTGCGTT ATCGCGGTGT GCTGCAGCTG
CAGGCCGGGC GCTTGCTGCT GCGCCAGGAA CAGTACGGTC GTGCCCGCGA GGTGTTCGCC
CAGACCCTGC AGCAGTTGCA GCAACGCCAG CAACTGGCGC CCTCGGGCTT CTATGATCTG
CTGCCGCGTC TGCGTCGCTA CCTGGCCGTC AGCGACCTGC TGCTCGGTCA TCATGCCGCT
GCCGAGCATG CCCTGCGCCT GCTGCTGGAC GAATGCCAGA TGGCCGGACA TCGCAGCCTC
AGCTGCGAGT GCCGTGTCGC GCTGGCCGAG AGCCTGTTGC TGCAGGGCCA TGACGAGCAA
GCCGAGGCGC TGCTGCAGCA GGCCCTGGGC GAAGCACGCC AGTTGCGCCT GCTGCGTCCG
CTGCTGGAGC TGCAGCAGCG TCAACCGCAG TGGCTGGAAC GGTTGCTGCC GGGGGAGGCC
GGGCAGAGCC TGCACCAGCG TCTGTTCCAG CCGCCACCGA CGTTGGACGA ACCGGCCAGC
GCCGGCACCG CGCTGCTCAG CTCGCGTGAG TTGGCGGTGC TGCAGCTGAT CGCTCAGGGC
TGTTCCAATC AGGAGATCGC CGATCGCCTG TTCATCTCCC TGCACACGGT AAAGACCCAT
GCGCGGCGGA TCAACGTCAA GCTCGGCGTG CAAAGGCGCA CCCAGGCGGT GGCGATGGCC
AAGGCGTATG GTCTGATGGG GGATTGA
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| Protein sequence | MPTLALARSN AVPAPSADLP RLPPAVISRL PLEQRLLASE ARLRLLCAPA GAGKSVLLGQ
CARQTPAAVA RLWLDLGGRS LTPAQLCTRL AAALQQPATD VNEAALLEML QAHSGRLWIF
LDDYPRQPDG ELDACLDRLF AAAPAQITWW VASRRTPAWN LPRLLLQGDL LELEGQDLAL
DEVGLAELLT ALQLNLGEDL GQRLLQSSEG WLAAIRLLLL DADEDALRQR LQAGCPLLRD
YVQREVLADL DDELRSDLHA LALLPRFSAP LCEHLLEGRG SELLAELQRR QLFVRRLDSS
GTWFRLWRPL AAVLRSLPGG LVPAPVHVRA CQWFARHGDI REAVEHALQA GQVEVAVNYL
QRFSQEQLLQ GHSVAQLLQW REELPAWLFA SSPRLIVLQA WALIICARFD EARACTEALT
HFLPQPDARR QRKLLAHWQA LSGVLARQCG RRDARQHCLE ALQALDDSGW SQRILCYQAL
AQQYLAENAL DQARQALDEG LRLSRLHGSL IYEALLNTDR CLLLEMQGEA GRAAELAEQS
LTLLRGRVSH SPVVGRLLLL RASLLARQGL DETARQAYRQ GLQEAEFCED AYTISGYLGQ
VELAEACGDL DEAYQWLQKA ERVMQCSHVP EVRYRGVLQL QAGRLLLRQE QYGRAREVFA
QTLQQLQQRQ QLAPSGFYDL LPRLRRYLAV SDLLLGHHAA AEHALRLLLD ECQMAGHRSL
SCECRVALAE SLLLQGHDEQ AEALLQQALG EARQLRLLRP LLELQQRQPQ WLERLLPGEA
GQSLHQRLFQ PPPTLDEPAS AGTALLSSRE LAVLQLIAQG CSNQEIADRL FISLHTVKTH
ARRINVKLGV QRRTQAVAMA KAYGLMGD
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