More than 300 homologs were found in PanDaTox collection
for query gene Dfer_2336 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013037  Dfer_2336  two component transcriptional regulator, LuxR family  100 
 
 		 208 aa  418  1e-116  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.725579  normal  1 
 
 
-
 
NC_013132  Cpin_4114  two component transcriptional regulator, LuxR family  27.72 
 
 		 208 aa  82.4  0.000000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0576718  normal  0.109105 
 
 
-
 
NC_013037  Dfer_2335  two component transcriptional regulator, LuxR family  28.16 
 
 		 209 aa  79.7  0.00000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.938318  normal  1 
 
 
-
 
NC_013037  Dfer_1284  two component transcriptional regulator, LuxR family  22.82 
 
 		 209 aa  76.6  0.0000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.108206  normal  0.346883 
 
 
-
 
NC_007760  Adeh_1762  two component LuxR family transcriptional regulator  28.93 
 
 		 210 aa  74.7  0.0000000000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_2172  two component transcriptional regulator, LuxR family  28.43 
 
 		 210 aa  73.2  0.000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  26.26 
 
 		 210 aa  73.9  0.000000000002  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  26.26 
 
 		 210 aa  73.9  0.000000000002  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_0153  two component transcriptional regulator, LuxR family  27.27 
 
 		 210 aa  72  0.000000000007  Ralstonia pickettii 12D  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  27.27 
 
 		 210 aa  71.6  0.000000000009  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007908  Rfer_1873  two component LuxR family transcriptional regulator  26.02 
 
 		 219 aa  70.5  0.00000000002  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_2078  two component transcriptional regulator, LuxR family  27.04 
 
 		 210 aa  70.5  0.00000000002  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A2902  two component LuxR family transcriptional regulator  23.86 
 
 		 212 aa  70.1  0.00000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.255362  normal  1 
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  27.27 
 
 		 210 aa  70.5  0.00000000002  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007614  Nmul_A1336  two component LuxR family transcriptional regulator  24.75 
 
 		 208 aa  67.8  0.0000000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_013037  Dfer_1276  two component transcriptional regulator, LuxR family  25.13 
 
 		 209 aa  67  0.0000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.161375  normal  0.335829 
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  25.64 
 
 		 213 aa  66.6  0.0000000002  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_1286  two component transcriptional regulator, LuxR family  24.39 
 
 		 215 aa  67  0.0000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.13459  normal  0.233078 
 
 
-
 
NC_011662  Tmz1t_0180  two component transcriptional regulator, LuxR family  24 
 
 		 213 aa  66.2  0.0000000003  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  27.78 
 
 		 211 aa  66.2  0.0000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_013037  Dfer_4796  two component transcriptional regulator, LuxR family  24.63 
 
 		 206 aa  65.1  0.0000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  hitchhiker  0.00878953 
 
 
-
 
NC_013037  Dfer_5301  two component transcriptional regulator, LuxR family  24.63 
 
 		 212 aa  63.5  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.0298564 
 
 
-
 
NC_007951  Bxe_A1460  two component LuxR family transcriptional regulator  24.37 
 
 		 210 aa  62.8  0.000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.39219  normal  0.352919 
 
 
-
 
NC_007404  Tbd_1588  two component LuxR family transcriptional regulator  23.86 
 
 		 215 aa  62.4  0.000000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.731747  normal  0.987016 
 
 
-
 
NC_010681  Bphyt_2656  two component transcriptional regulator, LuxR family  24.37 
 
 		 210 aa  62.8  0.000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.756738  normal  0.520546 
 
 
-
 
NC_013037  Dfer_0608  two component transcriptional regulator, LuxR family  22.61 
 
 		 209 aa  62.8  0.000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.631365  normal  1 
 
 
-
 
NC_010524  Lcho_3952  two component LuxR family transcriptional regulator  22.27 
 
 		 222 aa  62.4  0.000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.173353 
 
 
-
 
NC_007347  Reut_A0121  two component LuxR family transcriptional regulator  24.87 
 
 		 210 aa  62.4  0.000000005  Ralstonia eutropha JMP134  Bacteria  normal  0.830531  n/a   
 
 
-
 
NC_013173  Dbac_1038  two component transcriptional regulator, LuxR family  24.75 
 
 		 215 aa  62  0.000000007  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.942109  n/a   
 
 
-
 
NC_013132  Cpin_4551  two component transcriptional regulator, LuxR family  25 
 
 		 208 aa  61.6  0.000000007  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.000124934  normal  0.0275678 
 
 
-
 
NC_013037  Dfer_0897  two component transcriptional regulator, LuxR family  24.75 
 
 		 219 aa  60.8  0.00000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.181032 
 
 
-
 
NC_011992  Dtpsy_3068  two component transcriptional regulator, LuxR family  22.73 
 
 		 209 aa  61.2  0.00000001  Acidovorax ebreus TPSY  Bacteria  normal  0.44153  n/a   
 
 
-
 
NC_008782  Ajs_3794  two component LuxR family transcriptional regulator  22.73 
 
 		 209 aa  61.2  0.00000001  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  25.91 
 
 		 217 aa  60.8  0.00000001  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  25.12 
 
 		 222 aa  60.5  0.00000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_1698  two component transcriptional regulator, LuxR family  22.44 
 
 		 207 aa  60.1  0.00000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.126193 
 
 
-
 
NC_007948  Bpro_0881  two component LuxR family transcriptional regulator  27.04 
 
 		 210 aa  60.5  0.00000002  Polaromonas sp. JS666  Bacteria  normal  0.464883  normal  0.594453 
 
 
-
 
NC_007973  Rmet_0090  two component LuxR family transcriptional regulator  25.38 
 
 		 210 aa  60.5  0.00000002  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010159  YpAngola_A4132  two-component system response regulator  23.98 
 
 		 196 aa  60.5  0.00000002  Yersinia pestis Angola  Bacteria  normal  1  normal  0.249835 
 
 
-
 
NC_009708  YpsIP31758_4080  transcriptional regulatory protein UhpA  23.98 
 
 		 196 aa  60.5  0.00000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_010465  YPK_0081  two component LuxR family transcriptional regulator  23.47 
 
 		 196 aa  60.1  0.00000003  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_0922  two component LuxR family transcriptional regulator  26.53 
 
 		 210 aa  59.7  0.00000003  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.114328  normal  1 
 
 
-
 
NC_009455  DehaBAV1_0849  two component LuxR family transcriptional regulator  25.76 
 
 		 209 aa  59.7  0.00000003  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010515  Bcenmc03_4563  two component LuxR family transcriptional regulator  24.74 
 
 		 214 aa  59.3  0.00000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.0560765 
 
 
-
 
NC_007404  Tbd_2237  two component LuxR family transcriptional regulator  24.37 
 
 		 211 aa  59.3  0.00000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008061  Bcen_5187  two component LuxR family transcriptional regulator  24.74 
 
 		 214 aa  59.3  0.00000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_010552  BamMC406_5498  two component LuxR family transcriptional regulator  25.26 
 
 		 214 aa  59.3  0.00000004  Burkholderia ambifaria MC40-6  Bacteria  normal  1  hitchhiker  0.00509748 
 
 
-
 
NC_008543  Bcen2424_5672  two component LuxR family transcriptional regulator  24.74 
 
 		 214 aa  59.3  0.00000004  Burkholderia cenocepacia HI2424  Bacteria  normal  1  hitchhiker  0.00685344 
 
 
-
 
NC_013132  Cpin_2357  two component transcriptional regulator, LuxR family  25.15 
 
 		 234 aa  59.3  0.00000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_6085  two component transcriptional regulator, LuxR family  25.62 
 
 		 217 aa  58.9  0.00000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  23.12 
 
 		 214 aa  58.5  0.00000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_010002  Daci_1809  two component LuxR family transcriptional regulator  23.98 
 
 		 210 aa  58.5  0.00000006  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008786  Veis_0032  two component LuxR family transcriptional regulator  22.96 
 
 		 210 aa  58.5  0.00000006  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.245451  normal  1 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  23.65 
 
 		 214 aa  58.5  0.00000007  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal  1 
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  25.13 
 
 		 210 aa  58.2  0.00000008  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.612124 
 
 
-
 
NC_009380  Strop_3824  response regulator receiver  24.14 
 
 		 228 aa  58.2  0.00000009  Salinispora tropica CNB-440  Bacteria  normal  0.206519  normal  1 
 
 
-
 
NC_013132  Cpin_1556  two component transcriptional regulator, LuxR family  28.95 
 
 		 222 aa  57.8  0.0000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B0026  two component LuxR family transcriptional regulator  24.74 
 
 		 214 aa  57.8  0.0000001  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  23.94 
 
 		 206 aa  58.2  0.0000001  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_011992  Dtpsy_2832  two component transcriptional regulator, LuxR family  22.84 
 
 		 210 aa  57.8  0.0000001  Acidovorax ebreus TPSY  Bacteria  normal  0.988429  n/a   
 
 
-
 
NC_011071  Smal_0283  two component transcriptional regulator, LuxR family  28.02 
 
 		 208 aa  57.8  0.0000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.393471  normal  0.0532877 
 
 
-
 
NC_007947  Mfla_1987  two component LuxR family transcriptional regulator  22.45 
 
 		 215 aa  57.4  0.0000001  Methylobacillus flagellatus KT  Bacteria  normal  0.0949899  normal  1 
 
 
-
 
NC_009953  Sare_4214  two component LuxR family transcriptional regulator  23.65 
 
 		 228 aa  57.8  0.0000001  Salinispora arenicola CNS-205  Bacteria  normal  0.0601429  normal  0.0532868 
 
 
-
 
NC_008391  Bamb_4946  two component LuxR family transcriptional regulator  24.74 
 
 		 214 aa  58.2  0.0000001  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.0203352 
 
 
-
 
NC_008782  Ajs_3509  two component LuxR family transcriptional regulator  22.84 
 
 		 239 aa  57.8  0.0000001  Acidovorax sp. JS42  Bacteria  normal  0.325902  normal  1 
 
 
-
 
NC_010571  Oter_3239  two component LuxR family transcriptional regulator  24.5 
 
 		 274 aa  57  0.0000002  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010117  COXBURSA331_A0830  transcriptional regulator  21.5 
 
 		 211 aa  56.6  0.0000002  Coxiella burnetii RSA 331  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  22.33 
 
 		 229 aa  56.2  0.0000003  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_4108  two component transcriptional regulator, LuxR family  25.51 
 
 		 210 aa  56.6  0.0000003  Variovorax paradoxus S110  Bacteria  normal  0.755468  n/a   
 
 
-
 
NC_009727  CBUD_0726  response regulator  21.5 
 
 		 211 aa  56.6  0.0000003  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
-
 
NC_013037  Dfer_2086  two component transcriptional regulator, LuxR family  23.65 
 
 		 220 aa  56.2  0.0000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.963114 
 
 
-
 
NC_013037  Dfer_4502  two component transcriptional regulator, LuxR family  26.24 
 
 		 205 aa  56.6  0.0000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.438194 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  23.15 
 
 		 214 aa  56.2  0.0000003  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_4476  two component transcriptional regulator, LuxR family  23.32 
 
 		 215 aa  56.6  0.0000003  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008578  Acel_0973  two component LuxR family transcriptional regulator  24.75 
 
 		 216 aa  56.2  0.0000003  Acidothermus cellulolyticus 11B  Bacteria  normal  0.255067  normal  0.404517 
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  24.5 
 
 		 214 aa  56.2  0.0000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.785726 
 
 
-
 
NC_008752  Aave_3862  two component LuxR family transcriptional regulator  22.84 
 
 		 210 aa  56.6  0.0000003  Acidovorax citrulli AAC00-1  Bacteria  normal  0.734244  normal  1 
 
 
-
 
NC_013173  Dbac_2015  two component transcriptional regulator, LuxR family  23.5 
 
 		 219 aa  56.2  0.0000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_6933  two component LuxR family transcriptional regulator  23.67 
 
 		 244 aa  56.2  0.0000004  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.322421 
 
 
-
 
NC_007777  Francci3_2258  two component LuxR family transcriptional regulator  23.76 
 
 		 224 aa  55.8  0.0000005  Frankia sp. CcI3  Bacteria  normal  0.124896  normal  0.0124728 
 
 
-
 
NC_009921  Franean1_4062  two component LuxR family transcriptional regulator  23.67 
 
 		 216 aa  55.5  0.0000005  Frankia sp. EAN1pec  Bacteria  normal  0.0448793  normal  0.300284 
 
 
-
 
NC_013093  Amir_6525  two component transcriptional regulator, LuxR family  25.62 
 
 		 216 aa  55.5  0.0000006  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  24.74 
 
 		 215 aa  55.5  0.0000006  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007348  Reut_B5536  LuxR response regulator receiver  24.88 
 
 		 209 aa  55.5  0.0000006  Ralstonia eutropha JMP134  Bacteria  normal  0.882777  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  24.74 
 
 		 215 aa  55.5  0.0000006  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  24.74 
 
 		 215 aa  55.5  0.0000006  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  24.74 
 
 		 215 aa  55.5  0.0000006  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  24.74 
 
 		 215 aa  55.5  0.0000006  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  24.74 
 
 		 215 aa  55.5  0.0000006  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  23.23 
 
 		 213 aa  55.1  0.0000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007951  Bxe_A4347  two component LuxR family transcriptional regulator  23.47 
 
 		 218 aa  55.1  0.0000007  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.705126 
 
 
-
 
NC_013235  Namu_4738  two component transcriptional regulator, LuxR family  22.39 
 
 		 233 aa  55.1  0.0000007  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  24.74 
 
 		 215 aa  55.1  0.0000008  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1595  two component LuxR family transcriptional regulator  21.21 
 
 		 209 aa  55.1  0.0000008  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00167261 
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  24.74 
 
 		 215 aa  54.7  0.0000009  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_010086  Bmul_3186  two component LuxR family transcriptional regulator  25.26 
 
 		 214 aa  54.7  0.0000009  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.10411 
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  25.13 
 
 		 213 aa  54.7  0.0000009  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.53826 
 
 
-
 
NC_013159  Svir_04820  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  25.24 
 
 		 229 aa  54.7  0.0000009  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.465009  normal  1 
 
 
-
 
NC_007517  Gmet_2158  two component LuxR family transcriptional regulator  21.83 
 
 		 210 aa  54.7  0.000001  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  0.0301144 
 
 
-
 
NC_010627  Bphy_7764  two component LuxR family transcriptional regulator  27.41 
 
 		 210 aa  53.9  0.000001  Burkholderia phymatum STM815  Bacteria  normal  0.527093  normal  1 
 
 
-
 
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