Gene Vapar_4108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4108 
Symbol 
ID7974430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4350962 
End bp4351594 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content63% 
IMG OID644794694 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_002945987 
Protein GI239817077 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.755468 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCAAAA TTGGAATTGT GGACGACCAC GCCATCGTCA GATCTGGCCT CAGGCAGTTC 
TTCTCCGAAC ACGTCGATTT GCGCGTGGCC GGCGAAGCCG CCAGCGGGCG CGAGGCCATC
GAGCTCGTGC GCACCACCGA ACTCGACGTG CTGGTGATGG ACCTTTCCAT GCCGGGGCAG
AGCGGCATCG ACGCGCTCGC CATGATCCGC GCCAAGGCGC CGGACGTGGG CATCCTCATC
CTGAGCGGCT ATCCCGAAGA GCACTACGCG ATGAATCTCA TCCGCCAGGG TGCGAGCGGC
TACCTCAACA AGGAATGCGA TCCGATGGAG ATCGTCAACG CCATTCGCAC CATCTCGCTC
GGCCGCCGCT ACATCACGCC GGCCGTGGCG GAGCTGCTGG CACGCCAGCT CGACCGCAAG
GACGATGCCG CGCCGCACGA GCAGCTGTCG GAGCGCGAGT TCCAGGTGTT CCTGAAGCTC
GCCAAGGGCG AGACCGCGGG CGACATCGCC AAGACGCTGT CGCTGTCGGT GAAGACCGTC
AGCACCTATC GCACGCGCCT CATGGAGAAG ATGAACCTGT CCTCCAACAG CGACCTCACG
TACTACGCAC TGAAGAACAA GCTGATCGAT TGA
 
Protein sequence
MIKIGIVDDH AIVRSGLRQF FSEHVDLRVA GEAASGREAI ELVRTTELDV LVMDLSMPGQ 
SGIDALAMIR AKAPDVGILI LSGYPEEHYA MNLIRQGASG YLNKECDPME IVNAIRTISL
GRRYITPAVA ELLARQLDRK DDAAPHEQLS EREFQVFLKL AKGETAGDIA KTLSLSVKTV
STYRTRLMEK MNLSSNSDLT YYALKNKLID