More than 300 homologs were found in PanDaTox collection
for query gene Dfer_0897 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_0897  two component transcriptional regulator, LuxR family  100 
 
 
219 aa  446  1.0000000000000001e-124  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.181032 
 
 
-
 
NC_010465  YPK_0081  two component LuxR family transcriptional regulator  29 
 
 
196 aa  84  0.000000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A4132  two-component system response regulator  28.5 
 
 
196 aa  83.2  0.000000000000003  Yersinia pestis Angola  Bacteria  normal  normal  0.249835 
 
 
-
 
NC_009708  YpsIP31758_4080  transcriptional regulatory protein UhpA  28.5 
 
 
196 aa  83.2  0.000000000000003  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4796  two component transcriptional regulator, LuxR family  30.69 
 
 
206 aa  80.5  0.00000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  hitchhiker  0.00878953 
 
 
-
 
NC_013037  Dfer_2086  two component transcriptional regulator, LuxR family  29.13 
 
 
220 aa  79.3  0.00000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.963114 
 
 
-
 
NC_011891  A2cp1_2172  two component transcriptional regulator, LuxR family  27.54 
 
 
210 aa  78.6  0.00000000000006  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  31.19 
 
 
217 aa  78.6  0.00000000000006  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_007760  Adeh_1762  two component LuxR family transcriptional regulator  27.54 
 
 
210 aa  78.6  0.00000000000007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_4145  two component transcriptional regulator, LuxR family  29.8 
 
 
216 aa  77.8  0.0000000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  27.01 
 
 
214 aa  75.9  0.0000000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_010159  YpAngola_A1688  LuxR family DNA-binding response regulator  28.22 
 
 
209 aa  74.7  0.000000000001  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000202542  normal  0.0533619 
 
 
-
 
NC_010465  YPK_2499  two component LuxR family transcriptional regulator  28.22 
 
 
209 aa  74.7  0.000000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.449467  n/a   
 
 
-
 
NC_009708  YpsIP31758_2402  LuxR family DNA-binding response regulator  28.22 
 
 
209 aa  74.7  0.000000000001  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000000000000137953  n/a   
 
 
-
 
NC_011145  AnaeK_2078  two component transcriptional regulator, LuxR family  26.09 
 
 
210 aa  73.9  0.000000000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03553  DNA-binding response regulator in two-component regulatory system wtih UhpB  28.29 
 
 
196 aa  70.5  0.00000000002  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0034  two component transcriptional regulator, LuxR family  28.29 
 
 
196 aa  70.5  0.00000000002  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0030  DNA-binding transcriptional activator UhpA  28.29 
 
 
196 aa  70.5  0.00000000002  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4250  DNA-binding transcriptional activator UhpA  28.29 
 
 
196 aa  70.5  0.00000000002  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3882  DNA-binding transcriptional activator UhpA  28.29 
 
 
196 aa  70.5  0.00000000002  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1595  two component transcriptional regulator, LuxR family  27.14 
 
 
203 aa  70.5  0.00000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.356259  n/a   
 
 
-
 
NC_011353  ECH74115_5099  DNA-binding transcriptional activator UhpA  28.29 
 
 
196 aa  70.5  0.00000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0828785 
 
 
-
 
NC_012892  B21_03495  hypothetical protein  28.29 
 
 
196 aa  70.5  0.00000000002  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4178  DNA-binding transcriptional activator UhpA  28.29 
 
 
196 aa  70.5  0.00000000002  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4034  DNA-binding transcriptional activator UhpA  28.29 
 
 
196 aa  70.5  0.00000000002  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.383338 
 
 
-
 
NC_012880  Dd703_2482  two component transcriptional regulator, LuxR family  27.75 
 
 
211 aa  69.7  0.00000000003  Dickeya dadantii Ech703  Bacteria  normal  0.46622  n/a   
 
 
-
 
NC_013421  Pecwa_1775  two component transcriptional regulator, LuxR family  30.39 
 
 
209 aa  70.1  0.00000000003  Pectobacterium wasabiae WPP163  Bacteria  normal  0.814588  n/a   
 
 
-
 
NC_013457  VEA_000091  transcriptional regulatory protein UhpA  30.24 
 
 
202 aa  69.7  0.00000000004  Vibrio sp. Ex25  Bacteria  normal  0.136186  n/a   
 
 
-
 
NC_011080  SNSL254_A4071  DNA-binding transcriptional activator UhpA  27.8 
 
 
196 aa  68.9  0.00000000005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4016  DNA-binding transcriptional activator UhpA  27.8 
 
 
196 aa  68.9  0.00000000005  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A4179  DNA-binding transcriptional activator UhpA  27.8 
 
 
196 aa  68.9  0.00000000005  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A4000  DNA-binding transcriptional activator UhpA  27.8 
 
 
196 aa  68.9  0.00000000005  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.348805  normal 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  26.87 
 
 
217 aa  68.9  0.00000000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_06590  DNA-binding response regulator, LuxR family protein  27.59 
 
 
210 aa  68.9  0.00000000006  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0132  two component LuxR family transcriptional regulator  27 
 
 
196 aa  68.6  0.00000000006  Serratia proteamaculans 568  Bacteria  normal  0.401597  normal 
 
 
-
 
NC_011083  SeHA_C4121  DNA-binding transcriptional activator UhpA  27.8 
 
 
196 aa  68.6  0.00000000007  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.97066  normal 
 
 
-
 
NC_013037  Dfer_0608  two component transcriptional regulator, LuxR family  27.18 
 
 
209 aa  68.6  0.00000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.631365  normal 
 
 
-
 
NC_013037  Dfer_2335  two component transcriptional regulator, LuxR family  34.19 
 
 
209 aa  68.2  0.00000000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.938318  normal 
 
 
-
 
NC_012912  Dd1591_3504  DNA-binding transcriptional activator UhpA  29.27 
 
 
196 aa  68.6  0.00000000008  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3231  two component LuxR family transcriptional regulator  30.47 
 
 
209 aa  67.8  0.0000000001  Opitutus terrae PB90-1  Bacteria  normal  0.229823  normal  0.0283688 
 
 
-
 
NC_009436  Ent638_0027  DNA-binding transcriptional activator UhpA  28.78 
 
 
197 aa  68.2  0.0000000001  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2614  two component LuxR family transcriptional regulator  28.04 
 
 
222 aa  67.4  0.0000000001  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1369  two component transcriptional regulator, LuxR family  29.9 
 
 
218 aa  67.4  0.0000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.380225  n/a   
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  25.64 
 
 
206 aa  67  0.0000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0043  two component LuxR family transcriptional regulator  27 
 
 
234 aa  66.6  0.0000000002  Opitutus terrae PB90-1  Bacteria  normal  normal  0.14113 
 
 
-
 
NC_014165  Tbis_3505  LuxR family two component transcriptional regulator  26.56 
 
 
213 aa  66.2  0.0000000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.345096  normal 
 
 
-
 
NC_012854  Rleg_6399  two component transcriptional regulator, LuxR family  27.98 
 
 
214 aa  66.6  0.0000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.139442 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  25 
 
 
219 aa  66.6  0.0000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_013037  Dfer_1286  two component transcriptional regulator, LuxR family  27.66 
 
 
215 aa  66.6  0.0000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.13459  normal  0.233078 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  27.54 
 
 
218 aa  66.2  0.0000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  27.14 
 
 
216 aa  66.6  0.0000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0190  two component transcriptional regulator, LuxR family  27.91 
 
 
219 aa  66.2  0.0000000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.146862  n/a   
 
 
-
 
NC_014212  Mesil_2848  two component transcriptional regulator, LuxR family  24.74 
 
 
212 aa  66.2  0.0000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  0.857037  normal  0.944506 
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  24.38 
 
 
215 aa  65.9  0.0000000005  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3417  two component transcriptional regulator, LuxR family  28.16 
 
 
232 aa  65.5  0.0000000006  Ralstonia pickettii 12J  Bacteria  normal  0.901274  normal 
 
 
-
 
NC_013037  Dfer_5301  two component transcriptional regulator, LuxR family  25.62 
 
 
212 aa  65.5  0.0000000006  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0298564 
 
 
-
 
NC_013730  Slin_4823  two component transcriptional regulator, LuxR family  29.95 
 
 
214 aa  65.1  0.0000000007  Spirosoma linguale DSM 74  Bacteria  normal  0.103693  normal  0.11387 
 
 
-
 
NC_013235  Namu_2003  two component transcriptional regulator, LuxR family  27.18 
 
 
219 aa  65.5  0.0000000007  Nakamurella multipartita DSM 44233  Bacteria  normal  0.183245  hitchhiker  0.00373502 
 
 
-
 
NC_012856  Rpic12D_3071  two component transcriptional regulator, LuxR family  27.18 
 
 
232 aa  64.7  0.0000000009  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4563  two component LuxR family transcriptional regulator  25.37 
 
 
214 aa  64.3  0.000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0560765 
 
 
-
 
NC_007511  Bcep18194_B0026  two component LuxR family transcriptional regulator  25.37 
 
 
214 aa  64.3  0.000000001  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  25.36 
 
 
264 aa  64.7  0.000000001  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_5187  two component LuxR family transcriptional regulator  25.37 
 
 
214 aa  64.3  0.000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4946  two component LuxR family transcriptional regulator  25.37 
 
 
214 aa  64.7  0.000000001  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0203352 
 
 
-
 
NC_008543  Bcen2424_5672  two component LuxR family transcriptional regulator  25.37 
 
 
214 aa  64.3  0.000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  hitchhiker  0.00685344 
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  24.38 
 
 
215 aa  63.9  0.000000002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0703  LuxR family transcriptional regulator  33.64 
 
 
211 aa  63.9  0.000000002  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.000151408  normal 
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  24.38 
 
 
215 aa  63.9  0.000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0677  two component LuxR family transcriptional regulator  33.64 
 
 
211 aa  63.9  0.000000002  Psychrobacter cryohalolentis K5  Bacteria  hitchhiker  0.00533706  normal 
 
 
-
 
NC_009973  Haur_5199  two component LuxR family transcriptional regulator  29.65 
 
 
225 aa  63.5  0.000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1429  two component LuxR family transcriptional regulator  33.64 
 
 
211 aa  64.3  0.000000002  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.85494 
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  24.38 
 
 
215 aa  63.9  0.000000002  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  24.38 
 
 
215 aa  63.9  0.000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  24.38 
 
 
215 aa  63.9  0.000000002  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  24.38 
 
 
215 aa  63.5  0.000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  24.38 
 
 
215 aa  63.9  0.000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1556  two component transcriptional regulator, LuxR family  25.49 
 
 
222 aa  63.2  0.000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_22850  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  26.02 
 
 
239 aa  63.2  0.000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.711047 
 
 
-
 
NC_010625  Bphy_5813  two component LuxR family transcriptional regulator  31.3 
 
 
215 aa  63.2  0.000000003  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_007404  Tbd_1588  two component LuxR family transcriptional regulator  23.15 
 
 
215 aa  62.8  0.000000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.731747  normal  0.987016 
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  25.12 
 
 
213 aa  62.8  0.000000004  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_5498  two component LuxR family transcriptional regulator  24.88 
 
 
214 aa  62.8  0.000000004  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.00509748 
 
 
-
 
NC_013132  Cpin_4114  two component transcriptional regulator, LuxR family  25 
 
 
208 aa  62.4  0.000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0576718  normal  0.109105 
 
 
-
 
NC_009636  Smed_1980  two component LuxR family transcriptional regulator  26.71 
 
 
226 aa  62.4  0.000000005  Sinorhizobium medicae WSM419  Bacteria  normal  0.893627  normal 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  25.87 
 
 
216 aa  62.4  0.000000005  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2950  LuxR response regulator receiver  24.51 
 
 
221 aa  62.4  0.000000006  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  26.17 
 
 
213 aa  62  0.000000006  Burkholderia phymatum STM815  Bacteria  normal  normal  0.53826 
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  24.88 
 
 
224 aa  62  0.000000006  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4040  two component LuxR family transcriptional regulator  25.26 
 
 
216 aa  62  0.000000006  Pseudomonas mendocina ymp  Bacteria  normal  0.56786  normal 
 
 
-
 
NC_008148  Rxyl_0094  two component LuxR family transcriptional regulator  28.86 
 
 
222 aa  62  0.000000006  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3615  two component LuxR family transcriptional regulator  25.62 
 
 
219 aa  62  0.000000006  Pseudomonas putida F1  Bacteria  normal  0.378192  normal  0.274637 
 
 
-
 
NC_010814  Glov_1571  two component transcriptional regulator, LuxR family  25.35 
 
 
223 aa  62  0.000000007  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3765  two component LuxR family transcriptional regulator  22.71 
 
 
277 aa  62  0.000000007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  25.84 
 
 
226 aa  62  0.000000008  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0500  two component transcriptional regulator, LuxR family  24.74 
 
 
226 aa  62  0.000000008  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1311  two component transcriptional regulator, LuxR family  23.65 
 
 
226 aa  61.6  0.000000009  Thauera sp. MZ1T  Bacteria  normal  0.165019  n/a   
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  25.25 
 
 
230 aa  61.6  0.000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2126  LuxR family DNA-binding response regulator  26.11 
 
 
219 aa  61.2  0.00000001  Pseudomonas putida KT2440  Bacteria  normal  0.118459  normal  0.107719 
 
 
-
 
NC_009719  Plav_2326  two component LuxR family transcriptional regulator  27.36 
 
 
210 aa  61.2  0.00000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  hitchhiker  0.000518478 
 
 
-
 
NC_013037  Dfer_2336  two component transcriptional regulator, LuxR family  24.75 
 
 
208 aa  60.8  0.00000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.725579  normal 
 
 
-
 
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