More than 300 homologs were found in PanDaTox collection
for query gene Dfer_0858 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_0858  response regulator receiver protein  100 
 
 
141 aa  289  8e-78  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.748894  normal 
 
 
-
 
NC_013037  Dfer_0800  two component transcriptional regulator, LytTR family  84.43 
 
 
251 aa  206  7e-53  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3229  LytTR family two component transcriptional regulator  50.96 
 
 
250 aa  103  9e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_1794  two component transcriptional regulator, LytTR family  42.86 
 
 
260 aa  102  2e-21  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0804  two component transcriptional regulator, LytTR family  41.72 
 
 
251 aa  101  4e-21  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1475  two component transcriptional regulator, LytTR family  50 
 
 
255 aa  100  7e-21  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.059663 
 
 
-
 
NC_013037  Dfer_0600  two component transcriptional regulator, LytTR family  44.74 
 
 
265 aa  100  1e-20  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.315052 
 
 
-
 
NC_013132  Cpin_0271  two component transcriptional regulator, LytTR family  51.46 
 
 
256 aa  98.6  2e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2256  two component transcriptional regulator, LytTR family  47.46 
 
 
262 aa  98.6  2e-20  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.596319 
 
 
-
 
NC_013037  Dfer_1317  two component transcriptional regulator, LytTR family  41.67 
 
 
261 aa  98.6  3e-20  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2775  two component transcriptional regulator, LytTR family  42.61 
 
 
258 aa  98.2  3e-20  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2091  two component transcriptional regulator, LytTR family  50 
 
 
259 aa  97.8  5e-20  Spirosoma linguale DSM 74  Bacteria  normal  0.0504817  normal  0.478744 
 
 
-
 
NC_013132  Cpin_7151  two component transcriptional regulator, LytTR family  50 
 
 
249 aa  97.8  5e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4908  LytTR family two component transcriptional regulator  50.96 
 
 
255 aa  96.3  1e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_1836  two component transcriptional regulator, LytTR family  46.15 
 
 
258 aa  95.9  2e-19  Spirosoma linguale DSM 74  Bacteria  normal  0.367672  normal  0.467017 
 
 
-
 
NC_013037  Dfer_2354  two component transcriptional regulator, LytTR family  35.95 
 
 
256 aa  95.9  2e-19  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5335  two component transcriptional regulator, LytTR family  47.22 
 
 
253 aa  95.1  3e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.709567 
 
 
-
 
NC_014230  CA2559_12408  two-component system response regulator  48.08 
 
 
251 aa  94.7  3e-19  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.401855  n/a   
 
 
-
 
NC_013132  Cpin_2661  two component transcriptional regulator, LytTR family  44.35 
 
 
252 aa  94.7  4e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6406  two component transcriptional regulator, LytTR family  40 
 
 
252 aa  92.4  2e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6102  two component transcriptional regulator, LytTR family  45.63 
 
 
252 aa  92.4  2e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6676  two component transcriptional regulator, LytTR family  38.13 
 
 
253 aa  92.4  2e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5312  two component transcriptional regulator, LytTR family  46.67 
 
 
255 aa  90.5  6e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0977362 
 
 
-
 
NC_013061  Phep_2789  response regulator receiver  47.79 
 
 
254 aa  90.5  7e-18  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4001  LytTR family two component transcriptional regulator  42.2 
 
 
255 aa  89.4  1e-17  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5824  two component transcriptional regulator, LytTR family  42.86 
 
 
258 aa  87.8  4e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0489181 
 
 
-
 
NC_013037  Dfer_5405  two component transcriptional regulator, LytTR family  44.66 
 
 
243 aa  87.4  6e-17  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.379459 
 
 
-
 
NC_013132  Cpin_0307  two component transcriptional regulator, LytTR family  43.4 
 
 
250 aa  86.7  1e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4674  LytTR family two component transcriptional regulator  46.15 
 
 
254 aa  85.5  2e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  0.124147  n/a   
 
 
-
 
NC_013730  Slin_2868  two component transcriptional regulator, LytTR family  43.14 
 
 
259 aa  85.1  3e-16  Spirosoma linguale DSM 74  Bacteria  normal  0.0154807  normal 
 
 
-
 
NC_013730  Slin_0837  response regulator receiver protein  43.93 
 
 
153 aa  85.1  3e-16  Spirosoma linguale DSM 74  Bacteria  normal  0.925678  normal 
 
 
-
 
NC_013061  Phep_2439  LytTr DNA-binding region  38.26 
 
 
255 aa  84.7  4e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  0.697869  normal 
 
 
-
 
NC_013730  Slin_3726  two component transcriptional regulator, LytTR family  41.75 
 
 
252 aa  84.3  5e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.304835 
 
 
-
 
NC_013132  Cpin_6060  two component transcriptional regulator, LytTR family  40.38 
 
 
253 aa  84  6e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0374  two component transcriptional regulator, LytTR family  42.57 
 
 
242 aa  83.6  8e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  34.15 
 
 
317 aa  83.6  9e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
NC_013037  Dfer_0758  two component transcriptional regulator, LytTR family  42.31 
 
 
256 aa  83.2  0.000000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.649382 
 
 
-
 
NC_013037  Dfer_1444  two component transcriptional regulator, LytTR family  38.68 
 
 
256 aa  80.9  0.000000000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.317386 
 
 
-
 
NC_011071  Smal_0617  two component transcriptional regulator, LytTR family  38.24 
 
 
243 aa  80.5  0.000000000000008  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.23864 
 
 
-
 
NC_013037  Dfer_5142  two component transcriptional regulator, LytTR family  41.9 
 
 
244 aa  79  0.00000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.546377  normal 
 
 
-
 
NC_010571  Oter_1527  LytTR family two component transcriptional regulator  40.78 
 
 
246 aa  78.6  0.00000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.109257  normal 
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  35.4 
 
 
246 aa  77  0.00000000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal 
 
 
-
 
NC_013730  Slin_2906  two component transcriptional regulator, LytTR family  41.75 
 
 
245 aa  75.9  0.0000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0067  LytTR family two component transcriptional regulator  39.45 
 
 
268 aa  75.5  0.0000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.169577  normal  0.169612 
 
 
-
 
NC_007954  Sden_0847  response regulator receiver  36.04 
 
 
232 aa  75.1  0.0000000000003  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0979  LytTR family two component transcriptional regulator  38.38 
 
 
242 aa  73.2  0.000000000001  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0238694 
 
 
-
 
NC_013730  Slin_3594  two component transcriptional regulator, LytTR family  35.29 
 
 
260 aa  72  0.000000000002  Spirosoma linguale DSM 74  Bacteria  normal  0.833136  normal  0.0457058 
 
 
-
 
NC_009674  Bcer98_3958  LytTR family two component transcriptional regulator  40.19 
 
 
246 aa  72.4  0.000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5137  response regulator  36.79 
 
 
246 aa  71.6  0.000000000003  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5234  LytTR family two component transcriptional regulator  36.79 
 
 
246 aa  72  0.000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5573  response regulator LytR  36.79 
 
 
246 aa  71.6  0.000000000004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5295  response regulator LytR  36.79 
 
 
246 aa  71.6  0.000000000004  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5122  response regulator  36.79 
 
 
246 aa  71.6  0.000000000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5536  response regulator LytR  36.79 
 
 
246 aa  71.6  0.000000000004  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_5691  response regulator LytR  36.79 
 
 
246 aa  71.6  0.000000000004  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_0588  response regulator receiver  38.61 
 
 
227 aa  71.2  0.000000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A5621  response regulator LytR  36.79 
 
 
246 aa  71.6  0.000000000004  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0480  response regulator receiver domain-containing protein  34.55 
 
 
265 aa  70.9  0.000000000006  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A5565  response regulator LytR  35.85 
 
 
246 aa  70.9  0.000000000006  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5384  response regulator LytR  35.85 
 
 
246 aa  70.9  0.000000000006  Bacillus cereus G9842  Bacteria  normal  0.662493  normal  0.485514 
 
 
-
 
NC_013061  Phep_3159  response regulator receiver  34.29 
 
 
242 aa  70.5  0.000000000008  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1209  LytTr DNA-binding region  37.25 
 
 
240 aa  69.7  0.00000000001  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0279  two-component response regulator AlgR  37.86 
 
 
248 aa  69.7  0.00000000001  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_0252  two-component response regulator  36.79 
 
 
246 aa  68.9  0.00000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3679  LytR/AlgR family transcriptional regulator  30.52 
 
 
262 aa  68.9  0.00000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_0097  LytR/AlgR family transcriptional regulator  39.81 
 
 
245 aa  68.9  0.00000000002  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_1246  LytTR family two component transcriptional regulator  39 
 
 
254 aa  68.9  0.00000000002  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_7298  two component transcriptional regulator, LytTR family  45.45 
 
 
230 aa  69.3  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_0246  two-component response regulator  36.79 
 
 
246 aa  68.9  0.00000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3416  putative two-component response-regulatory protein YehT  31.65 
 
 
237 aa  68.2  0.00000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.329348  normal  0.0577965 
 
 
-
 
NC_008463  PA14_69470  alginate biosynthesis regulatory protein AlgR  36.89 
 
 
248 aa  68.6  0.00000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.184834  normal 
 
 
-
 
NC_009656  PSPA7_6007  alginate biosynthesis regulatory protein AlgR  36.89 
 
 
248 aa  68.2  0.00000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.404994  n/a   
 
 
-
 
NC_009441  Fjoh_1679  LytTR family two component transcriptional regulator  37 
 
 
238 aa  68.6  0.00000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3976  LytTR family two component transcriptional regulator  34.95 
 
 
247 aa  68.2  0.00000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2186  two component transcriptional regulator, LytTR family  36.45 
 
 
275 aa  67.4  0.00000000006  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0224  putative two-component response-regulatory protein YehT  31.88 
 
 
237 aa  67.4  0.00000000006  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0183  response regulator  35.78 
 
 
246 aa  67  0.00000000008  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5133  two component transcriptional regulator, LytTR family  34.19 
 
 
227 aa  67  0.00000000008  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.983168 
 
 
-
 
NC_013170  Ccur_01160  response regulator of the LytR/AlgR family  34.59 
 
 
238 aa  66.6  0.0000000001  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1542  LytTr DNA-binding region  36.89 
 
 
245 aa  66.2  0.0000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.300206 
 
 
-
 
NC_011901  Tgr7_0031  response regulator receiver protein  35.92 
 
 
243 aa  66.2  0.0000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1841  response regulator receiver  35 
 
 
245 aa  65.5  0.0000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  hitchhiker  0.0000216203 
 
 
-
 
NC_007794  Saro_0227  LytR/AlgR family transcriptional regulator  37.14 
 
 
265 aa  65.5  0.0000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.312706  n/a   
 
 
-
 
NC_013132  Cpin_5230  two component transcriptional regulator, LytTR family  35.29 
 
 
244 aa  66.2  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.236835  normal  0.031416 
 
 
-
 
NC_008528  OEOE_0885  response regulator  32.43 
 
 
247 aa  65.9  0.0000000002  Oenococcus oeni PSU-1  Bacteria  normal  0.0355946  n/a   
 
 
-
 
NC_009253  Dred_2957  response regulator receiver protein  33.96 
 
 
236 aa  65.9  0.0000000002  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00954821  n/a   
 
 
-
 
NC_007005  Psyr_0063  response regulator receiver:LytTr DNA-binding region  34.95 
 
 
248 aa  65.5  0.0000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1001  LytR/AlgR family transcriptional regulator  30.84 
 
 
262 aa  65.1  0.0000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0103069 
 
 
-
 
NC_009832  Spro_3405  LytTR family two component transcriptional regulator  37.61 
 
 
244 aa  65.5  0.0000000003  Serratia proteamaculans 568  Bacteria  normal  0.732179  normal 
 
 
-
 
NC_013132  Cpin_3396  two component transcriptional regulator, LytTR family  37.11 
 
 
243 aa  65.5  0.0000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.655263 
 
 
-
 
NC_013440  Hoch_4801  two component transcriptional regulator, LytTR family  31.48 
 
 
240 aa  64.7  0.0000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.154299  normal 
 
 
-
 
NC_013132  Cpin_5734  two component transcriptional regulator, LytTR family  35 
 
 
257 aa  65.1  0.0000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  35.51 
 
 
252 aa  64.7  0.0000000004  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_011899  Hore_10420  two component transcriptional regulator, LytTR family  32.21 
 
 
253 aa  64.7  0.0000000004  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000460621  n/a   
 
 
-
 
NC_004578  PSPTO_0127  alginate biosynthesis regulatory protein AlgR  34.95 
 
 
248 aa  64.3  0.0000000005  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6623  two component transcriptional regulator, LytTR family  33.33 
 
 
258 aa  64.3  0.0000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0991065  normal  0.080317 
 
 
-
 
NC_013061  Phep_1585  LytTr DNA-binding region  37 
 
 
259 aa  64.7  0.0000000005  Pedobacter heparinus DSM 2366  Bacteria  normal  0.80455  normal  0.0356965 
 
 
-
 
NC_011830  Dhaf_0495  response regulator receiver and SARP domain protein  26.47 
 
 
365 aa  63.9  0.0000000007  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000000108458  n/a   
 
 
-
 
NC_009783  VIBHAR_00984  putative two-component response-regulatory protein YehT  29.93 
 
 
242 aa  63.5  0.0000000008  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008048  Sala_2673  response regulator receiver protein  35.58 
 
 
268 aa  63.9  0.0000000008  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.587227  normal  0.606797 
 
 
-
 
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