More than 300 homologs were found in PanDaTox collection
for query gene Daci_3104 on replicon NC_010002
Organism: Delftia acidovorans SPH-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010002  Daci_3104  LuxR family transcriptional regulator  100 
 
 
163 aa  330  5e-90  Delftia acidovorans SPH-1  Bacteria  normal  0.218126  normal 
 
 
-
 
NC_013131  Caci_3391  transcriptional regulator, LuxR family  39.23 
 
 
171 aa  63.5  0.000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0382463  normal  0.946449 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  40 
 
 
218 aa  62  0.000000003  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  40 
 
 
218 aa  62  0.000000003  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_010571  Oter_3357  two component LuxR family transcriptional regulator  47.14 
 
 
238 aa  62  0.000000004  Opitutus terrae PB90-1  Bacteria  normal  0.1255  normal 
 
 
-
 
NC_010002  Daci_1106  two component LuxR family transcriptional regulator  48.39 
 
 
223 aa  62  0.000000004  Delftia acidovorans SPH-1  Bacteria  normal  0.584765  normal 
 
 
-
 
NC_011662  Tmz1t_1311  two component transcriptional regulator, LuxR family  39.53 
 
 
226 aa  61.2  0.000000006  Thauera sp. MZ1T  Bacteria  normal  0.165019  n/a   
 
 
-
 
NC_007520  Tcr_1382  two component LuxR family transcriptional regulator  50 
 
 
232 aa  60.1  0.00000001  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6596  two component LuxR family transcriptional regulator  50 
 
 
249 aa  60.1  0.00000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0154  two component transcriptional regulator, LuxR family  50 
 
 
244 aa  60.1  0.00000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0799  response regulator receiver protein  45.59 
 
 
204 aa  60.1  0.00000001  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.403434 
 
 
-
 
NC_009972  Haur_1563  two component LuxR family transcriptional regulator  41.89 
 
 
257 aa  58.9  0.00000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.781509  n/a   
 
 
-
 
NC_009767  Rcas_1228  LuxR family transcriptional regulator  42.86 
 
 
204 aa  58.9  0.00000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.118696  normal 
 
 
-
 
NC_013173  Dbac_1038  two component transcriptional regulator, LuxR family  48.53 
 
 
215 aa  58.9  0.00000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.942109  n/a   
 
 
-
 
NC_013132  Cpin_1062  transcriptional regulator, LuxR family  39.24 
 
 
234 aa  58.5  0.00000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2630  two component transcriptional regulator, LuxR family  50.91 
 
 
243 aa  58.5  0.00000004  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0581  two component LuxR family transcriptional regulator  46.48 
 
 
235 aa  58.5  0.00000004  Desulfovibrio vulgaris DP4  Bacteria  normal  0.706783  normal 
 
 
-
 
NC_008726  Mvan_1646  two component LuxR family transcriptional regulator  40.58 
 
 
219 aa  58.2  0.00000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.92254 
 
 
-
 
NC_011831  Cagg_2359  two component transcriptional regulator, LuxR family  39.74 
 
 
247 aa  57.4  0.00000008  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0990205  decreased coverage  0.00133027 
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  46.88 
 
 
217 aa  57.4  0.00000008  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2782  two component LuxR family transcriptional regulator  35 
 
 
214 aa  57.4  0.00000009  Geobacter uraniireducens Rf4  Bacteria  normal  0.834695  n/a   
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  44.44 
 
 
219 aa  57  0.0000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_007404  Tbd_2786  two component LuxR family transcriptional regulator  45 
 
 
210 aa  56.6  0.0000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0443035  normal  0.922606 
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  32.9 
 
 
223 aa  57  0.0000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  41.43 
 
 
215 aa  56.6  0.0000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  41.43 
 
 
215 aa  56.6  0.0000001  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  41.43 
 
 
215 aa  56.6  0.0000001  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  38.67 
 
 
231 aa  55.8  0.0000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_3390  LuxR family two component transcriptional regulator  42.86 
 
 
228 aa  55.8  0.0000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.269937  normal 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  51.72 
 
 
206 aa  56.2  0.0000002  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_009972  Haur_0710  two component LuxR family transcriptional regulator  40.98 
 
 
240 aa  56.2  0.0000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6192  two component LuxR family transcriptional regulator  47.27 
 
 
231 aa  55.8  0.0000002  Burkholderia phymatum STM815  Bacteria  normal  0.446565  normal  0.0472092 
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  51.79 
 
 
246 aa  56.2  0.0000002  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_010623  Bphy_4334  two component LuxR family transcriptional regulator  45.07 
 
 
209 aa  55.5  0.0000003  Burkholderia phymatum STM815  Bacteria  normal  0.255025  normal 
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  39.73 
 
 
218 aa  55.5  0.0000003  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_012854  Rleg_6399  two component transcriptional regulator, LuxR family  42.86 
 
 
214 aa  55.5  0.0000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.139442 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  37.04 
 
 
218 aa  55.5  0.0000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  43.75 
 
 
219 aa  55.8  0.0000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_014210  Ndas_3120  two component transcriptional regulator, LuxR family  51.61 
 
 
218 aa  55.5  0.0000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.954631  normal 
 
 
-
 
NC_008752  Aave_0654  two component LuxR family transcriptional regulator  47.62 
 
 
256 aa  55.8  0.0000003  Acidovorax citrulli AAC00-1  Bacteria  normal  0.639317  normal 
 
 
-
 
NC_009972  Haur_4039  two component LuxR family transcriptional regulator  51.79 
 
 
250 aa  55.5  0.0000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.512873  n/a   
 
 
-
 
NC_011992  Dtpsy_0424  two component transcriptional regulator, LuxR family  49.09 
 
 
223 aa  55.1  0.0000004  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  32.93 
 
 
224 aa  55.1  0.0000004  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2345  two component transcriptional regulator  34.51 
 
 
220 aa  55.1  0.0000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.499423  normal  0.134206 
 
 
-
 
NC_010571  Oter_0370  two component LuxR family transcriptional regulator  44.74 
 
 
214 aa  55.1  0.0000004  Opitutus terrae PB90-1  Bacteria  normal  normal  0.273913 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  44 
 
 
303 aa  55.1  0.0000004  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_008782  Ajs_0433  two component LuxR family transcriptional regulator  49.09 
 
 
223 aa  55.1  0.0000004  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  36.23 
 
 
222 aa  54.7  0.0000005  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  44.3 
 
 
227 aa  54.7  0.0000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  40.98 
 
 
217 aa  55.1  0.0000005  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  30.67 
 
 
226 aa  54.7  0.0000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013171  Apre_1519  two component transcriptional regulator, LuxR family  43.08 
 
 
198 aa  54.7  0.0000005  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  40.98 
 
 
217 aa  55.1  0.0000005  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2446  transcriptional regulator, LuxR family  49.18 
 
 
188 aa  54.7  0.0000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  32.28 
 
 
227 aa  54.7  0.0000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_010644  Emin_0306  two component LuxR family transcriptional regulator  40.85 
 
 
215 aa  54.7  0.0000006  Elusimicrobium minutum Pei191  Bacteria  unclonable  0.000000000161342  hitchhiker  0.00000159266 
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  41.18 
 
 
217 aa  54.7  0.0000006  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  43.66 
 
 
231 aa  54.3  0.0000006  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  43.75 
 
 
224 aa  54.3  0.0000007  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  43.28 
 
 
253 aa  54.3  0.0000007  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  45.83 
 
 
214 aa  53.9  0.0000008  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0670  two component LuxR family transcriptional regulator  52.73 
 
 
216 aa  53.9  0.0000009  Desulfovibrio vulgaris DP4  Bacteria  normal  0.267154  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  39.73 
 
 
219 aa  53.5  0.000001  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  45.9 
 
 
237 aa  53.5  0.000001  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_013595  Sros_6032  response regulator receiver protein  42.86 
 
 
218 aa  53.5  0.000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.53611  normal 
 
 
-
 
NC_009901  Spea_1733  two component LuxR family transcriptional regulator  45.61 
 
 
210 aa  53.9  0.000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.137963  n/a   
 
 
-
 
NC_013173  Dbac_1883  two component transcriptional regulator, LuxR family  45.45 
 
 
222 aa  53.5  0.000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp0980  nitrate/nitrite response regulator transcription regulator protein  45.45 
 
 
222 aa  53.1  0.000001  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  43.64 
 
 
221 aa  53.5  0.000001  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0179337 
 
 
-
 
NC_007778  RPB_0211  two component LuxR family transcriptional regulator  49.09 
 
 
228 aa  53.5  0.000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.664514  normal 
 
 
-
 
NC_013235  Namu_0409  two component transcriptional regulator, LuxR family  45.45 
 
 
191 aa  53.5  0.000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  42.86 
 
 
223 aa  53.9  0.000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.658241 
 
 
-
 
NC_011831  Cagg_0020  two component transcriptional regulator, LuxR family  37.31 
 
 
229 aa  53.5  0.000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  43.08 
 
 
211 aa  53.5  0.000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  35.21 
 
 
236 aa  53.5  0.000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_013172  Bfae_06340  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.44 
 
 
211 aa  53.1  0.000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  43.55 
 
 
219 aa  53.1  0.000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_009523  RoseRS_1633  two component LuxR family transcriptional regulator  36.99 
 
 
254 aa  53.5  0.000001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  39.74 
 
 
223 aa  53.5  0.000001  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_012791  Vapar_2791  two component transcriptional regulator, LuxR family  56.86 
 
 
213 aa  52.8  0.000002  Variovorax paradoxus S110  Bacteria  normal  0.0590322  n/a   
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  42.03 
 
 
217 aa  52.8  0.000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.482316 
 
 
-
 
NC_011769  DvMF_1129  two component transcriptional regulator, LuxR family  50.91 
 
 
231 aa  52.8  0.000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011094  SeSA_A4000  DNA-binding transcriptional activator UhpA  46.67 
 
 
196 aa  52.8  0.000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.348805  normal 
 
 
-
 
NC_004347  SO_4157  DNA-binding response regulator  47.06 
 
 
202 aa  52.8  0.000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  49.02 
 
 
230 aa  52.8  0.000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B0595  transcriptional regulator FimZ  39.19 
 
 
210 aa  52.8  0.000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.447967  n/a   
 
 
-
 
NC_011886  Achl_2591  transcriptional regulator, LuxR family  52.08 
 
 
552 aa  53.1  0.000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000770971 
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  36.05 
 
 
208 aa  52.8  0.000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0637899 
 
 
-
 
NC_011205  SeD_A4179  DNA-binding transcriptional activator UhpA  46.67 
 
 
196 aa  52.8  0.000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3517  two component LuxR family transcriptional regulator  47.06 
 
 
201 aa  52.8  0.000002  Shewanella sp. MR-4  Bacteria  normal  0.751217  normal 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  45.59 
 
 
221 aa  53.1  0.000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4071  DNA-binding transcriptional activator UhpA  46.67 
 
 
196 aa  52.8  0.000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  43.55 
 
 
250 aa  53.1  0.000002  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3697  two component LuxR family transcriptional regulator  47.06 
 
 
201 aa  52.8  0.000002  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  44.07 
 
 
222 aa  52.4  0.000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  44.26 
 
 
250 aa  52.8  0.000002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  43.55 
 
 
220 aa  52.8  0.000002  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_009436  Ent638_0993  transcriptional regulator FimZ  42.86 
 
 
210 aa  53.1  0.000002  Enterobacter sp. 638  Bacteria  normal  hitchhiker  0.000287084 
 
 
-
 
NC_011205  SeD_A0598  transcriptional regulator FimZ  39.19 
 
 
210 aa  52.8  0.000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.110504 
 
 
-
 
NC_010172  Mext_1668  response regulator receiver  35.71 
 
 
222 aa  52.8  0.000002  Methylobacterium extorquens PA1  Bacteria  normal  0.679138  normal 
 
 
-
 
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