Gene Vapar_2791 details

Gene Information

• Locus tag: Vapar_2791
• ID: 7971004
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2937471
• End bp: 2938112
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644793377
• Product: two component transcriptional regulator, LuxR family
• Protein accession: YP_002944678
• Protein GI: 239815768
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4566] Response regulator

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0590322
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACACCG CCTCTGGCAC CCACCAGCCG CAATCGCCGC TGATCCACCT CATCGACGAC 
GACCAGGCGG TGCGCGACAG CCTGTCGCTC CTGATCGGCA CGGTCGGCCT GCGGGTGCAG 
GGCTGGGCCG ATCCGCAGGC CTTCATCGAC GGCTTCGACC GCGCGAGCGT CGGCGCCATC 
GTGCTCGACG TGCGCATGCC CGGCATCAGC GGCCTCACGG TGCTCGACCG GCTCATGGCG 
CAGGGCGTCG ACCAGCCGGT GATCATGCTC ACCGGCCACG GCACGGTCGA GATGTGCCGC 
CGCGCCTTCA AGGCCGGCGC GGCCGAGTTC CTGGAGAAAC CGGTGGACGA CGAGCAGTTG 
CTCGAGGCCC TGCAGCAGGC GGTGCGCCAG CATGTGCGCT CGCGCGAACG CTCGCAGGCC 
GACAACGCGG CGCGCGAGCG CGTGGCGCAG CTGTCGGAGC GCGAGCGCGA AGTGCTTGCC 
TTCATCGTGC AGGGCCTCAC CAACAAGGAG ATCGCGCGCA CGCTCGCGCT GTCGCCGCGA 
ACGGTCGAGA CGCACCGCGC CAACCTGTTC GCCAAGCTCG ACTGCGATTC GCTCGCGCAG 
TTGATCCGGC GCTACGCGGT GCTGGTCGCG GGGCAAGACT GA 

 

Protein sequence

MNTASGTHQP QSPLIHLIDD DQAVRDSLSL LIGTVGLRVQ GWADPQAFID GFDRASVGAI 
VLDVRMPGIS GLTVLDRLMA QGVDQPVIML TGHGTVEMCR RAFKAGAAEF LEKPVDDEQL 
LEALQQAVRQ HVRSRERSQA DNAARERVAQ LSEREREVLA FIVQGLTNKE IARTLALSPR 
TVETHRANLF AKLDCDSLAQ LIRRYAVLVA GQD