| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3391 |
|---|
| Symbol | |
|---|
| ID | 8334744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 3742386 |
|---|
| End bp | 3742901 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644956535 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003114138 |
|---|
| Protein GI | 256392574 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0382463 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.946449 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACCG GCCTGGTCCG GCTGCGGGTC AACCCCGACG ACACCCGGCG CCGTTCGCTC
AGCGAGCGGG AACACGAAGT GCTCATGCTG GTGGCGGCCG GGGGTACCAG GGACGACATC
TCCCGTGAGC TGGGCATGGC GCCGGGTACG GTGGCCAGCC ACATGACGCG GATCTACCGT
GCCTTGGGCG CGCGCAACGC CGCGCACGCG GTCGCGCTGG CGCACGGCTG CGGAGTGCTG
TCGGCACGCC CGGAGCCGCT GGCGCCGTTC GTCTCGCGGC GGGAACGCCA AGTGCTGGCC
GGGCTGGCGC ACGGACTGAC TTCGGCGCAG GTGGCGTTCC ACCTGTCGCT GTCCATAGAG
ACGGTGAAGA CCCATCTGCG GCGCGTCTAC CGGAAGCTGG AAGTCACCAG CGGGGCGAAC
GCCGTGGACA CCGCGATCAG CCGGCGGCTA CTGGCGGTCG TCGTCGACAC CAACGGAGCC
GCTCCACGGC GCACTTTGGG CCGAGCCGCT GTGTGA
|
|---|
| Protein sequence | MRTGLVRLRV NPDDTRRRSL SEREHEVLML VAAGGTRDDI SRELGMAPGT VASHMTRIYR
ALGARNAAHA VALAHGCGVL SARPEPLAPF VSRRERQVLA GLAHGLTSAQ VAFHLSLSIE
TVKTHLRRVY RKLEVTSGAN AVDTAISRRL LAVVVDTNGA APRRTLGRAA V
|
|---|
| |