More than 300 homologs were found in PanDaTox collection
for query gene Vapar_4377 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012791  Vapar_4377  two component transcriptional regulator, LuxR family  100 
 
 		 237 aa  470  1e-132  Variovorax paradoxus S110  Bacteria  normal  0.237342  n/a   
 
 
-
 
NC_012792  Vapar_6121  two component transcriptional regulator, LuxR family  66.82 
 
 		 212 aa  251  5.000000000000001e-66  Variovorax paradoxus S110  Bacteria  normal  0.808445  n/a   
 
 
-
 
NC_010524  Lcho_4097  two component LuxR family transcriptional regulator  38.53 
 
 		 239 aa  118  6e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000208001 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  37.02 
 
 		 221 aa  110  1.0000000000000001e-23  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  37.26 
 
 		 210 aa  110  2.0000000000000002e-23  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  37.07 
 
 		 252 aa  108  5e-23  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_008781  Pnap_2689  two component LuxR family transcriptional regulator  37.27 
 
 		 224 aa  108  1e-22  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.270095  normal  0.632538 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  37.26 
 
 		 224 aa  107  2e-22  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  39.32 
 
 		 215 aa  107  2e-22  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  36.99 
 
 		 221 aa  106  4e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  37.44 
 
 		 221 aa  105  5e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_0105  two component LuxR family transcriptional regulator  36.19 
 
 		 219 aa  105  8e-22  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.0920509 
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  32.87 
 
 		 223 aa  104  1e-21  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_010571  Oter_1284  two component LuxR family transcriptional regulator  37.2 
 
 		 209 aa  104  1e-21  Opitutus terrae PB90-1  Bacteria  normal  0.479266  normal  1 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  34.8 
 
 		 223 aa  103  2e-21  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  34.22 
 
 		 227 aa  102  4e-21  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  36.36 
 
 		 220 aa  101  9e-21  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  31.37 
 
 		 227 aa  101  9e-21  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  36.23 
 
 		 216 aa  101  1e-20  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  37.56 
 
 		 217 aa  100  2e-20  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  32.86 
 
 		 220 aa  100  2e-20  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  30.37 
 
 		 220 aa  100  2e-20  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  37.56 
 
 		 217 aa  100  2e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  36.71 
 
 		 215 aa  100  2e-20  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  32.39 
 
 		 220 aa  99.8  3e-20  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008578  Acel_0973  two component LuxR family transcriptional regulator  36.82 
 
 		 216 aa  100  3e-20  Acidothermus cellulolyticus 11B  Bacteria  normal  0.255067  normal  0.404517 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  32.09 
 
 		 222 aa  99.8  3e-20  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  33.33 
 
 		 209 aa  100  3e-20  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  32.86 
 
 		 220 aa  99.8  4e-20  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  32.38 
 
 		 220 aa  99.4  5e-20  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  34.27 
 
 		 220 aa  99  6e-20  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  34.27 
 
 		 220 aa  99  6e-20  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  31.92 
 
 		 220 aa  98.6  8e-20  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  34.27 
 
 		 220 aa  98.2  9e-20  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  35.27 
 
 		 216 aa  98.2  1e-19  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  35.27 
 
 		 216 aa  98.2  1e-19  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  36.23 
 
 		 216 aa  97.8  1e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_007908  Rfer_2039  two component LuxR family transcriptional regulator  36.11 
 
 		 212 aa  98.2  1e-19  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  33.8 
 
 		 220 aa  97.8  1e-19  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  32.2 
 
 		 213 aa  97.4  2e-19  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  33.18 
 
 		 239 aa  97.1  2e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_2055  two component transcriptional regulator, LuxR family  30.53 
 
 		 220 aa  97.4  2e-19  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  32.7 
 
 		 219 aa  96.3  3e-19  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  33.81 
 
 		 224 aa  96.7  3e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  35.27 
 
 		 216 aa  96.7  3e-19  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  35.55 
 
 		 232 aa  95.9  4e-19  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  33.64 
 
 		 230 aa  95.9  5e-19  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  36.49 
 
 		 226 aa  95.9  5e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  31.75 
 
 		 238 aa  95.9  5e-19  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  33.33 
 
 		 219 aa  95.5  7e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  33.02 
 
 		 221 aa  95.5  7e-19  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  38.05 
 
 		 218 aa  95.5  7e-19  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  35.61 
 
 		 209 aa  95.1  8e-19  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  31.75 
 
 		 223 aa  94.7  1e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_007974  Rmet_4854  putative two component LuxR family transcriptional regulator  33.65 
 
 		 211 aa  94.7  1e-18  Cupriavidus metallidurans CH34  Bacteria  normal  0.133138  normal  0.31096 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  33.33 
 
 		 223 aa  94.7  1e-18  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  35.27 
 
 		 215 aa  93.6  2e-18  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  33.65 
 
 		 215 aa  93.6  2e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_4871  two component transcriptional regulator, LuxR family  35.02 
 
 		 222 aa  94  2e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.134443  normal  0.31614 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  31.75 
 
 		 219 aa  94.4  2e-18  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_009439  Pmen_2668  two component LuxR family transcriptional regulator  34.74 
 
 		 213 aa  93.6  2e-18  Pseudomonas mendocina ymp  Bacteria  normal  0.18046  normal  1 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  33.17 
 
 		 222 aa  93.2  3e-18  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_003295  RSc2455  response regulator VSRC transcription regulator protein  36.57 
 
 		 221 aa  93.6  3e-18  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  32.55 
 
 		 219 aa  93.2  3e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  33.66 
 
 		 209 aa  93.2  3e-18  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  32.84 
 
 		 223 aa  93.2  3e-18  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  33.5 
 
 		 223 aa  93.2  4e-18  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal  1 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  32.35 
 
 		 223 aa  92.4  6e-18  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_008699  Noca_2943  two component LuxR family transcriptional regulator  32.55 
 
 		 215 aa  92  6e-18  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  37.04 
 
 		 214 aa  92.4  6e-18  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  37.04 
 
 		 214 aa  92.4  6e-18  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_33010  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  34.56 
 
 		 223 aa  92.4  6e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.163463  normal  1 
 
 
-
 
NC_011071  Smal_2340  two component transcriptional regulator, LuxR family  34.72 
 
 		 217 aa  92  7e-18  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.273151  normal  1 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  35.32 
 
 		 211 aa  92  7e-18  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  35.27 
 
 		 215 aa  92  7e-18  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  34.56 
 
 		 209 aa  92  7e-18  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  31.28 
 
 		 211 aa  92  7e-18  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_010682  Rpic_2723  two component transcriptional regulator, LuxR family  35.91 
 
 		 221 aa  92  8e-18  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_2334  two component transcriptional regulator, LuxR family  35.91 
 
 		 221 aa  92  8e-18  Ralstonia pickettii 12D  Bacteria  normal  0.477601  normal  0.267999 
 
 
-
 
NC_010511  M446_2139  two component LuxR family transcriptional regulator  32.54 
 
 		 244 aa  91.7  9e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.0202732  normal  0.168937 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  33.18 
 
 		 227 aa  91.7  1e-17  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_013730  Slin_5409  two component transcriptional regulator, LuxR family  31.22 
 
 		 223 aa  91.3  1e-17  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00220575  normal  1 
 
 
-
 
NC_013093  Amir_1549  two component transcriptional regulator, LuxR family  37.67 
 
 		 238 aa  91.7  1e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  0.196807  n/a   
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  28.9 
 
 		 225 aa  91.3  1e-17  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  30.59 
 
 		 224 aa  90.9  2e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  32.16 
 
 		 229 aa  90.5  2e-17  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013525  Tter_0641  two component transcriptional regulator, LuxR family  31.1 
 
 		 1648 aa  90.5  2e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  36.36 
 
 		 216 aa  90.5  2e-17  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  32.38 
 
 		 231 aa  90.5  2e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_007650  BTH_II0851  DNA-binding response regulator  34.78 
 
 		 223 aa  90.9  2e-17  Burkholderia thailandensis E264  Bacteria  normal  0.0464733  n/a   
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.25 
 
 		 226 aa  90.9  2e-17  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  36 
 
 		 251 aa  90.9  2e-17  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_008009  Acid345_2443  two component LuxR family transcriptional regulator  31.92 
 
 		 215 aa  90.9  2e-17  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  34.62 
 
 		 241 aa  90.5  2e-17  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  35.34 
 
 		 248 aa  90.9  2e-17  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  33.03 
 
 		 225 aa  90.1  3e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  32.23 
 
 		 219 aa  89.7  3e-17  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  30.33 
 
 		 219 aa  90.1  3e-17  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_010510  Mrad2831_5839  two component LuxR family transcriptional regulator  35.44 
 
 		 198 aa  90.1  3e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.242407  hitchhiker  0.00194364 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  35.27 
 
 		 251 aa  90.1  3e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
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