More than 300 homologs were found in PanDaTox collection
for query gene Sama_0123 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_0123  ABC transporter, permease protein  100 
 
 
235 aa  464  9.999999999999999e-131  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.749352 
 
 
-
 
NC_009901  Spea_4095  binding-protein-dependent transport systems inner membrane component  77.87 
 
 
235 aa  337  5.9999999999999996e-92  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3880  binding-protein-dependent transport systems inner membrane component  78.3 
 
 
235 aa  325  4.0000000000000003e-88  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3918  binding-protein-dependent transport systems inner membrane component  75.74 
 
 
235 aa  323  2e-87  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0186248  n/a   
 
 
-
 
NC_009092  Shew_3684  binding-protein-dependent transport systems inner membrane component  78.21 
 
 
235 aa  320  1.9999999999999998e-86  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0086  binding-protein-dependent transport systems inner membrane component  75.32 
 
 
235 aa  318  3.9999999999999996e-86  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4720  ABC transporter, permease protein  79.57 
 
 
235 aa  311  3.9999999999999997e-84  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_4078  binding-protein-dependent transport systems inner membrane component  79.57 
 
 
235 aa  312  3.9999999999999997e-84  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3875  binding-protein-dependent transport systems inner membrane component  79.15 
 
 
235 aa  311  7.999999999999999e-84  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3968  binding-protein-dependent transport systems inner membrane component  78.72 
 
 
235 aa  309  2e-83  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_4263  binding-protein-dependent transport systems inner membrane component  79.57 
 
 
235 aa  307  1.0000000000000001e-82  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_4318  binding-protein-dependent transport systems inner membrane component  79.57 
 
 
235 aa  307  1.0000000000000001e-82  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4458  binding-protein-dependent transport systems inner membrane component  79.57 
 
 
235 aa  307  1.0000000000000001e-82  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0081  binding-protein-dependent transport systems inner membrane component  79.57 
 
 
235 aa  307  1.0000000000000001e-82  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0123  binding-protein-dependent transport systems inner membrane component  77.02 
 
 
235 aa  306  2.0000000000000002e-82  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_02263  hypothetical protein  59.82 
 
 
232 aa  269  2.9999999999999997e-71  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003505  ABC-type tungstate transport system permease protein  58.93 
 
 
232 aa  263  1e-69  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1131  ABC transporter, permease protein  60.71 
 
 
232 aa  262  4e-69  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0928  ABC-type transport system, permease subunit  43.3 
 
 
228 aa  186  3e-46  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2083  binding-protein-dependent transport systems inner membrane component  55.2 
 
 
235 aa  186  3e-46  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0233  ABC transporter, permease protein  45.78 
 
 
232 aa  181  1e-44  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2224  binding-protein-dependent transport systems inner membrane component  48.64 
 
 
231 aa  175  5e-43  Desulfovibrio vulgaris DP4  Bacteria  normal  0.89872  normal 
 
 
-
 
NC_007347  Reut_A2781  binding-protein dependent transport system inner membrane protein  47.75 
 
 
232 aa  171  6.999999999999999e-42  Ralstonia eutropha JMP134  Bacteria  normal  0.24732  n/a   
 
 
-
 
NC_007973  Rmet_2918  binding-protein-dependent transport systems inner membrane component  46.19 
 
 
232 aa  170  1e-41  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_1777  binding-protein-dependent transport systems inner membrane component  43.5 
 
 
231 aa  169  3e-41  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.753761  n/a   
 
 
-
 
NC_008553  Mthe_1203  binding-protein-dependent transport systems inner membrane component  41.74 
 
 
228 aa  169  3e-41  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_013173  Dbac_3403  binding-protein-dependent transport systems inner membrane component  42.61 
 
 
229 aa  169  3e-41  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.669819  n/a   
 
 
-
 
NC_008942  Mlab_0466  hypothetical protein  42.38 
 
 
235 aa  166  2e-40  Methanocorpusculum labreanum Z  Archaea  normal  0.700584  normal 
 
 
-
 
NC_011832  Mpal_2303  binding-protein-dependent transport systems inner membrane component  38.86 
 
 
231 aa  166  2.9999999999999998e-40  Methanosphaerula palustris E1-9c  Archaea  normal  0.105994  normal  0.374369 
 
 
-
 
NC_003295  RSc2631  transmembrane ABC transporter protein  51.56 
 
 
235 aa  162  5.0000000000000005e-39  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0364359  normal  0.493142 
 
 
-
 
NC_009802  CCC13826_0203  ABC transporter, permease protein  38.46 
 
 
230 aa  159  3e-38  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2866  binding-protein-dependent transport systems inner membrane component  52.26 
 
 
235 aa  159  4e-38  Ralstonia pickettii 12J  Bacteria  normal  0.370655  normal 
 
 
-
 
NC_012856  Rpic12D_2460  binding-protein-dependent transport systems inner membrane component  52.26 
 
 
235 aa  157  9e-38  Ralstonia pickettii 12D  Bacteria  normal  0.455343  normal  0.828531 
 
 
-
 
NC_013223  Dret_2397  binding-protein-dependent transport systems inner membrane component  38.33 
 
 
231 aa  157  2e-37  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1392  binding-protein-dependent transport systems inner membrane component  41.07 
 
 
231 aa  154  1e-36  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2781  binding-protein-dependent transport systems inner membrane component  49.75 
 
 
231 aa  152  2.9999999999999998e-36  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008787  CJJ81176_1524  tungstate ABC transporter, permease protein, putative  39.64 
 
 
228 aa  152  5.9999999999999996e-36  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2701  ABC transporter, permease protein  43.11 
 
 
228 aa  151  7e-36  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1891  putative tungstate ABC transporter, permease protein  39.19 
 
 
228 aa  151  8.999999999999999e-36  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1710  tungstate ABC transporter, permease protein, putative  39.19 
 
 
228 aa  150  1e-35  Campylobacter jejuni RM1221  Bacteria  normal  0.506083  n/a   
 
 
-
 
NC_010725  Mpop_2968  binding-protein-dependent transport systems inner membrane component  40.09 
 
 
231 aa  150  2e-35  Methylobacterium populi BJ001  Bacteria  normal  0.946732  normal 
 
 
-
 
NC_007796  Mhun_0520  binding-protein-dependent transport systems inner membrane component  39.18 
 
 
228 aa  149  4e-35  Methanospirillum hungatei JF-1  Archaea  normal  0.40002  normal  0.449442 
 
 
-
 
NC_009051  Memar_1893  binding-protein-dependent transport systems inner membrane component  36.91 
 
 
233 aa  149  4e-35  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_008782  Ajs_3129  binding-protein-dependent transport systems inner membrane component  44.06 
 
 
245 aa  147  1.0000000000000001e-34  Acidovorax sp. JS42  Bacteria  normal  normal  0.682243 
 
 
-
 
NC_011992  Dtpsy_2476  binding-protein-dependent transport systems inner membrane component  44.06 
 
 
242 aa  147  1.0000000000000001e-34  Acidovorax ebreus TPSY  Bacteria  normal  0.8915  n/a   
 
 
-
 
NC_009051  Memar_1878  binding-protein-dependent transport systems inner membrane component  37.09 
 
 
231 aa  143  2e-33  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6167  binding-protein-dependent transport systems inner membrane component  40.8 
 
 
230 aa  142  3e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.931122 
 
 
-
 
NC_010718  Nther_0328  binding-protein-dependent transport systems inner membrane component  40.38 
 
 
234 aa  142  4e-33  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00042229  normal  0.158089 
 
 
-
 
NC_011757  Mchl_3076  binding-protein-dependent transport systems inner membrane component  38.03 
 
 
231 aa  142  4e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0752148  normal 
 
 
-
 
NC_007517  Gmet_1040  binding-protein dependent transport system inner membrane protein  42.6 
 
 
228 aa  142  6e-33  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000000111264  hitchhiker  0.0000000335509 
 
 
-
 
NC_009943  Dole_2630  binding-protein-dependent transport systems inner membrane component  42.48 
 
 
229 aa  141  9e-33  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_2850  binding-protein-dependent transport systems inner membrane component  37.2 
 
 
246 aa  141  9.999999999999999e-33  Methylobacterium extorquens PA1  Bacteria  normal  0.402937  normal 
 
 
-
 
NC_008043  TM1040_3765  binding-protein-dependent transport systems inner membrane component  42.67 
 
 
241 aa  138  7e-32  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_013522  Taci_1649  binding-protein-dependent transport systems inner membrane component  38.99 
 
 
231 aa  137  1e-31  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2869  binding-protein-dependent transport systems inner membrane component  45.74 
 
 
260 aa  137  2e-31  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012029  Hlac_2056  binding-protein-dependent transport systems inner membrane component  37.39 
 
 
238 aa  134  9.999999999999999e-31  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.202188  normal  0.0740354 
 
 
-
 
NC_012918  GM21_2527  binding-protein-dependent transport systems inner membrane component  35.96 
 
 
232 aa  134  1.9999999999999998e-30  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00176301 
 
 
-
 
NC_008554  Sfum_0028  binding-protein-dependent transport systems inner membrane component  37.78 
 
 
230 aa  132  3e-30  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000259316  normal  0.154621 
 
 
-
 
NC_009483  Gura_3543  binding-protein-dependent transport systems inner membrane component  37.44 
 
 
232 aa  133  3e-30  Geobacter uraniireducens Rf4  Bacteria  normal  0.0152138  n/a   
 
 
-
 
NC_013165  Shel_27150  ABC-type tungstate transport system, periplasmic component  35.05 
 
 
248 aa  133  3e-30  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.544705  normal 
 
 
-
 
NC_011146  Gbem_1694  binding-protein-dependent transport systems inner membrane component  35.53 
 
 
232 aa  132  3.9999999999999996e-30  Geobacter bemidjiensis Bem  Bacteria  normal  0.754071  n/a   
 
 
-
 
NC_010511  M446_3942  binding-protein-dependent transport systems inner membrane component  42.31 
 
 
231 aa  132  6e-30  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0272486 
 
 
-
 
NC_009635  Maeo_0472  binding-protein-dependent transport systems inner membrane component  36.41 
 
 
234 aa  130  2.0000000000000002e-29  Methanococcus aeolicus Nankai-3  Archaea  normal  0.183215  n/a   
 
 
-
 
NC_007644  Moth_0068  binding-protein dependent transport system inner membrane protein  36.8 
 
 
245 aa  128  8.000000000000001e-29  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0463742  normal  0.217149 
 
 
-
 
NC_012030  Hlac_3453  binding-protein-dependent transport systems inner membrane component  35.44 
 
 
238 aa  127  2.0000000000000002e-28  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_012791  Vapar_1588  binding-protein-dependent transport systems inner membrane component  45.41 
 
 
251 aa  124  1e-27  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2437  binding-protein-dependent transport systems inner membrane component  40.72 
 
 
230 aa  123  2e-27  Chelativorans sp. BNC1  Bacteria  normal  0.829623  n/a   
 
 
-
 
NC_008609  Ppro_0891  binding-protein-dependent transport systems inner membrane component  37.12 
 
 
232 aa  124  2e-27  Pelobacter propionicus DSM 2379  Bacteria  normal  0.819313  n/a   
 
 
-
 
NC_011894  Mnod_3625  binding-protein-dependent transport systems inner membrane component  36.82 
 
 
231 aa  123  3e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_2295  binding-protein-dependent transport systems inner membrane component  35.32 
 
 
238 aa  121  9.999999999999999e-27  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013517  Sterm_1681  binding-protein-dependent transport systems inner membrane component  36.71 
 
 
209 aa  120  1.9999999999999998e-26  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2740  binding-protein-dependent transport systems inner membrane component  39.04 
 
 
232 aa  120  3e-26  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.726638 
 
 
-
 
NC_010718  Nther_2285  binding-protein-dependent transport systems inner membrane component  39.29 
 
 
229 aa  118  7e-26  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.000107267  normal 
 
 
-
 
NC_010524  Lcho_1813  putative permease component of ABC transporter  39.79 
 
 
238 aa  117  9.999999999999999e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00043828 
 
 
-
 
NC_009952  Dshi_0626  basic organic compound ABC-transporter  37.17 
 
 
228 aa  118  9.999999999999999e-26  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2806  binding-protein-dependent transport systems inner membrane component  36.49 
 
 
234 aa  117  9.999999999999999e-26  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013924  Nmag_3966  binding-protein-dependent transport systems inner membrane component  34.74 
 
 
238 aa  117  1.9999999999999998e-25  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_013525  Tter_1722  binding-protein-dependent transport systems inner membrane component  36.6 
 
 
239 aa  117  1.9999999999999998e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010424  Daud_1541  binding-protein-dependent transport systems inner membrane component  40.93 
 
 
217 aa  116  3e-25  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0915654  n/a   
 
 
-
 
NC_012034  Athe_0825  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
210 aa  115  6.9999999999999995e-25  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00592133  n/a   
 
 
-
 
NC_010320  Teth514_1387  binding-protein-dependent transport systems inner membrane component  33.77 
 
 
232 aa  114  1.0000000000000001e-24  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1758  binding-protein-dependent transport systems inner membrane component  43.98 
 
 
257 aa  114  1.0000000000000001e-24  Polaromonas sp. JS666  Bacteria  normal  normal  0.175288 
 
 
-
 
NC_007413  Ava_4039  binding-protein dependent transport system inner membrane protein  38.83 
 
 
250 aa  111  8.000000000000001e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.564931 
 
 
-
 
NC_009621  Smed_5503  binding-protein-dependent transport systems inner membrane component  36.9 
 
 
241 aa  111  1.0000000000000001e-23  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_1632  sulfate/tungstate ABC transporter permease  36.08 
 
 
225 aa  110  3e-23  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2270  binding-protein-dependent transport systems inner membrane component  38.64 
 
 
232 aa  106  4e-22  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1509  binding-protein-dependent transport systems inner membrane component  43.98 
 
 
254 aa  103  2e-21  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2223  putative permease component of ABC transporter  40.3 
 
 
252 aa  86.3  4e-16  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5478  sulfate ABC transporter, inner membrane subunit CysT  31.42 
 
 
298 aa  83.2  0.000000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.168073  normal  0.0338469 
 
 
-
 
NC_009667  Oant_0121  sulfate ABC transporter, inner membrane subunit CysT  31.47 
 
 
288 aa  79.3  0.00000000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1794  binding-protein-dependent transport systems inner membrane component  33.64 
 
 
218 aa  78.6  0.00000000000008  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_010531  Pnec_0569  binding-protein-dependent transport systems inner membrane component  42.71 
 
 
139 aa  78.6  0.00000000000009  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1798  sulfate ABC transporter, inner membrane subunit CysT  31.47 
 
 
292 aa  78.2  0.0000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0366388  n/a   
 
 
-
 
NC_011004  Rpal_0820  sulfate ABC transporter, inner membrane subunit CysT  29.11 
 
 
278 aa  77  0.0000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.073979  n/a   
 
 
-
 
NC_014210  Ndas_2558  molybdate ABC transporter, inner membrane subunit  32.04 
 
 
293 aa  77.4  0.0000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  decreased coverage  0.000169531  normal  0.108126 
 
 
-
 
NC_013501  Rmar_0055  molybdate ABC transporter, inner membrane subunit  31.28 
 
 
220 aa  77  0.0000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_3445  molybdate ABC transporter, inner membrane subunit  31.16 
 
 
223 aa  77.4  0.0000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_3265  binding-protein-dependent transport systems inner membrane component  30.05 
 
 
269 aa  76.6  0.0000000000003  Sebaldella termitidis ATCC 33386  Bacteria  decreased coverage  0.00000000632399  n/a   
 
 
-
 
NC_007925  RPC_4009  Sulfate ABC transporter, permease protein CysT  28.64 
 
 
278 aa  76.3  0.0000000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.43888 
 
 
-
 
NC_012791  Vapar_2960  sulfate ABC transporter, inner membrane subunit CysT  28.3 
 
 
295 aa  75.9  0.0000000000006  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
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