More than 300 homologs were found in PanDaTox collection
for query gene Mchl_3076 on replicon NC_011757
Organism: Methylobacterium chloromethanicum CM4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011757  Mchl_3076  binding-protein-dependent transport systems inner membrane component  100 
 
 
231 aa  441  1e-123  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0752148  normal 
 
 
-
 
NC_010172  Mext_2850  binding-protein-dependent transport systems inner membrane component  96.97 
 
 
246 aa  407  1.0000000000000001e-112  Methylobacterium extorquens PA1  Bacteria  normal  0.402937  normal 
 
 
-
 
NC_010725  Mpop_2968  binding-protein-dependent transport systems inner membrane component  89.61 
 
 
231 aa  398  9.999999999999999e-111  Methylobacterium populi BJ001  Bacteria  normal  0.946732  normal 
 
 
-
 
NC_010510  Mrad2831_6167  binding-protein-dependent transport systems inner membrane component  83.41 
 
 
230 aa  339  2e-92  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.931122 
 
 
-
 
NC_010511  M446_3942  binding-protein-dependent transport systems inner membrane component  74.89 
 
 
231 aa  295  3e-79  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0272486 
 
 
-
 
NC_011894  Mnod_3625  binding-protein-dependent transport systems inner membrane component  75 
 
 
231 aa  291  5e-78  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3765  binding-protein-dependent transport systems inner membrane component  59.15 
 
 
241 aa  223  1e-57  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2806  binding-protein-dependent transport systems inner membrane component  53.95 
 
 
234 aa  223  2e-57  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1392  binding-protein-dependent transport systems inner membrane component  52.81 
 
 
231 aa  217  1e-55  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0626  basic organic compound ABC-transporter  55.61 
 
 
228 aa  216  2.9999999999999998e-55  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2437  binding-protein-dependent transport systems inner membrane component  54.55 
 
 
230 aa  212  2.9999999999999995e-54  Chelativorans sp. BNC1  Bacteria  normal  0.829623  n/a   
 
 
-
 
NC_008340  Mlg_2740  binding-protein-dependent transport systems inner membrane component  55.75 
 
 
232 aa  212  2.9999999999999995e-54  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.726638 
 
 
-
 
NC_009621  Smed_5503  binding-protein-dependent transport systems inner membrane component  53.74 
 
 
241 aa  202  5e-51  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2869  binding-protein-dependent transport systems inner membrane component  56.59 
 
 
260 aa  194  1e-48  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1813  putative permease component of ABC transporter  56.28 
 
 
238 aa  189  2.9999999999999997e-47  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00043828 
 
 
-
 
NC_011992  Dtpsy_2476  binding-protein-dependent transport systems inner membrane component  51.95 
 
 
242 aa  185  5e-46  Acidovorax ebreus TPSY  Bacteria  normal  0.8915  n/a   
 
 
-
 
NC_008782  Ajs_3129  binding-protein-dependent transport systems inner membrane component  51.95 
 
 
245 aa  185  6e-46  Acidovorax sp. JS42  Bacteria  normal  normal  0.682243 
 
 
-
 
NC_008554  Sfum_0028  binding-protein-dependent transport systems inner membrane component  43.56 
 
 
230 aa  176  3e-43  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000259316  normal  0.154621 
 
 
-
 
NC_007498  Pcar_0928  ABC-type transport system, permease subunit  41.7 
 
 
228 aa  175  4e-43  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2527  binding-protein-dependent transport systems inner membrane component  45.71 
 
 
232 aa  172  3.9999999999999995e-42  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00176301 
 
 
-
 
NC_013165  Shel_27150  ABC-type tungstate transport system, periplasmic component  42.34 
 
 
248 aa  169  3e-41  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.544705  normal 
 
 
-
 
NC_011146  Gbem_1694  binding-protein-dependent transport systems inner membrane component  44.76 
 
 
232 aa  168  6e-41  Geobacter bemidjiensis Bem  Bacteria  normal  0.754071  n/a   
 
 
-
 
NC_009483  Gura_3543  binding-protein-dependent transport systems inner membrane component  48.94 
 
 
232 aa  167  9e-41  Geobacter uraniireducens Rf4  Bacteria  normal  0.0152138  n/a   
 
 
-
 
NC_009051  Memar_1893  binding-protein-dependent transport systems inner membrane component  44.24 
 
 
233 aa  166  2.9999999999999998e-40  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_012791  Vapar_1588  binding-protein-dependent transport systems inner membrane component  57.98 
 
 
251 aa  166  2.9999999999999998e-40  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008942  Mlab_0466  hypothetical protein  40.09 
 
 
235 aa  165  5.9999999999999996e-40  Methanocorpusculum labreanum Z  Archaea  normal  0.700584  normal 
 
 
-
 
NC_007644  Moth_0068  binding-protein dependent transport system inner membrane protein  42.15 
 
 
245 aa  164  2.0000000000000002e-39  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0463742  normal  0.217149 
 
 
-
 
NC_007948  Bpro_1758  binding-protein-dependent transport systems inner membrane component  51.78 
 
 
257 aa  163  2.0000000000000002e-39  Polaromonas sp. JS666  Bacteria  normal  normal  0.175288 
 
 
-
 
NC_010718  Nther_0328  binding-protein-dependent transport systems inner membrane component  41.51 
 
 
234 aa  162  5.0000000000000005e-39  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00042229  normal  0.158089 
 
 
-
 
NC_011832  Mpal_2303  binding-protein-dependent transport systems inner membrane component  39.72 
 
 
231 aa  159  3e-38  Methanosphaerula palustris E1-9c  Archaea  normal  0.105994  normal  0.374369 
 
 
-
 
NC_013223  Dret_2397  binding-protein-dependent transport systems inner membrane component  38.05 
 
 
231 aa  157  1e-37  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_3403  binding-protein-dependent transport systems inner membrane component  43.41 
 
 
229 aa  157  1e-37  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.669819  n/a   
 
 
-
 
NC_009051  Memar_1878  binding-protein-dependent transport systems inner membrane component  41.55 
 
 
231 aa  156  2e-37  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_008553  Mthe_1203  binding-protein-dependent transport systems inner membrane component  38.76 
 
 
228 aa  156  2e-37  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2223  putative permease component of ABC transporter  57.87 
 
 
252 aa  152  2.9999999999999998e-36  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1387  binding-protein-dependent transport systems inner membrane component  42.79 
 
 
232 aa  152  5.9999999999999996e-36  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012029  Hlac_2056  binding-protein-dependent transport systems inner membrane component  43 
 
 
238 aa  150  2e-35  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.202188  normal  0.0740354 
 
 
-
 
NC_007517  Gmet_1040  binding-protein dependent transport system inner membrane protein  47.57 
 
 
228 aa  149  3e-35  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000000111264  hitchhiker  0.0000000335509 
 
 
-
 
NC_002939  GSU2701  ABC transporter, permease protein  46.08 
 
 
228 aa  148  7e-35  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0233  ABC transporter, permease protein  38.22 
 
 
232 aa  147  1.0000000000000001e-34  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_0520  binding-protein-dependent transport systems inner membrane component  39.09 
 
 
228 aa  147  1.0000000000000001e-34  Methanospirillum hungatei JF-1  Archaea  normal  0.40002  normal  0.449442 
 
 
-
 
NC_008700  Sama_0123  ABC transporter, permease protein  37.89 
 
 
235 aa  147  1.0000000000000001e-34  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.749352 
 
 
-
 
NC_011883  Ddes_1777  binding-protein-dependent transport systems inner membrane component  38.01 
 
 
231 aa  147  2.0000000000000003e-34  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.753761  n/a   
 
 
-
 
NC_010718  Nther_2285  binding-protein-dependent transport systems inner membrane component  42.35 
 
 
229 aa  146  2.0000000000000003e-34  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.000107267  normal 
 
 
-
 
NC_008751  Dvul_2224  binding-protein-dependent transport systems inner membrane component  39.25 
 
 
231 aa  146  2.0000000000000003e-34  Desulfovibrio vulgaris DP4  Bacteria  normal  0.89872  normal 
 
 
-
 
NC_010424  Daud_1541  binding-protein-dependent transport systems inner membrane component  44.23 
 
 
217 aa  145  4.0000000000000006e-34  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0915654  n/a   
 
 
-
 
NC_008609  Ppro_0891  binding-protein-dependent transport systems inner membrane component  40.19 
 
 
232 aa  145  4.0000000000000006e-34  Pelobacter propionicus DSM 2379  Bacteria  normal  0.819313  n/a   
 
 
-
 
NC_009457  VC0395_A1131  ABC transporter, permease protein  36.65 
 
 
232 aa  145  6e-34  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_2295  binding-protein-dependent transport systems inner membrane component  39.91 
 
 
238 aa  144  8.000000000000001e-34  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009707  JJD26997_1891  putative tungstate ABC transporter, permease protein  37.56 
 
 
228 aa  143  2e-33  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_1524  tungstate ABC transporter, permease protein, putative  37.56 
 
 
228 aa  143  3e-33  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1710  tungstate ABC transporter, permease protein, putative  37.56 
 
 
228 aa  142  4e-33  Campylobacter jejuni RM1221  Bacteria  normal  0.506083  n/a   
 
 
-
 
NC_013456  VEA_003505  ABC-type tungstate transport system permease protein  35.19 
 
 
232 aa  142  5e-33  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_012030  Hlac_3453  binding-protein-dependent transport systems inner membrane component  42.03 
 
 
238 aa  140  9.999999999999999e-33  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_007347  Reut_A2781  binding-protein dependent transport system inner membrane protein  44.23 
 
 
232 aa  140  9.999999999999999e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.24732  n/a   
 
 
-
 
NC_007973  Rmet_2918  binding-protein-dependent transport systems inner membrane component  42.86 
 
 
232 aa  140  9.999999999999999e-33  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1509  binding-protein-dependent transport systems inner membrane component  51.85 
 
 
254 aa  141  9.999999999999999e-33  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_02263  hypothetical protein  34.35 
 
 
232 aa  139  1.9999999999999998e-32  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_1722  binding-protein-dependent transport systems inner membrane component  43.09 
 
 
239 aa  137  2e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_2270  binding-protein-dependent transport systems inner membrane component  43.28 
 
 
232 aa  137  2e-31  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1681  binding-protein-dependent transport systems inner membrane component  38 
 
 
209 aa  137  2e-31  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2083  binding-protein-dependent transport systems inner membrane component  43.01 
 
 
235 aa  136  3.0000000000000003e-31  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_1632  sulfate/tungstate ABC transporter permease  41.33 
 
 
225 aa  135  4e-31  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_0203  ABC transporter, permease protein  33.49 
 
 
230 aa  134  9e-31  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_013924  Nmag_3966  binding-protein-dependent transport systems inner membrane component  38.79 
 
 
238 aa  133  1.9999999999999998e-30  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_011769  DvMF_2781  binding-protein-dependent transport systems inner membrane component  41.18 
 
 
231 aa  133  3e-30  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009635  Maeo_0472  binding-protein-dependent transport systems inner membrane component  37.56 
 
 
234 aa  132  3e-30  Methanococcus aeolicus Nankai-3  Archaea  normal  0.183215  n/a   
 
 
-
 
NC_008698  Tpen_1794  binding-protein-dependent transport systems inner membrane component  43.9 
 
 
218 aa  132  6e-30  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_009901  Spea_4095  binding-protein-dependent transport systems inner membrane component  38.91 
 
 
235 aa  131  9e-30  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0825  binding-protein-dependent transport systems inner membrane component  35.82 
 
 
210 aa  130  1.0000000000000001e-29  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00592133  n/a   
 
 
-
 
NC_007413  Ava_4039  binding-protein dependent transport system inner membrane protein  40.38 
 
 
250 aa  130  2.0000000000000002e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.564931 
 
 
-
 
NC_013522  Taci_1649  binding-protein-dependent transport systems inner membrane component  35.1 
 
 
231 aa  125  4.0000000000000003e-28  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2631  transmembrane ABC transporter protein  43.14 
 
 
235 aa  125  5e-28  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0364359  normal  0.493142 
 
 
-
 
NC_010682  Rpic_2866  binding-protein-dependent transport systems inner membrane component  41.71 
 
 
235 aa  125  8.000000000000001e-28  Ralstonia pickettii 12J  Bacteria  normal  0.370655  normal 
 
 
-
 
NC_012856  Rpic12D_2460  binding-protein-dependent transport systems inner membrane component  41.21 
 
 
235 aa  121  9e-27  Ralstonia pickettii 12D  Bacteria  normal  0.455343  normal  0.828531 
 
 
-
 
NC_008345  Sfri_3918  binding-protein-dependent transport systems inner membrane component  37.06 
 
 
235 aa  121  9e-27  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0186248  n/a   
 
 
-
 
NC_009092  Shew_3684  binding-protein-dependent transport systems inner membrane component  36.55 
 
 
235 aa  120  9.999999999999999e-27  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2630  binding-protein-dependent transport systems inner membrane component  38.94 
 
 
229 aa  120  1.9999999999999998e-26  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3880  binding-protein-dependent transport systems inner membrane component  35.78 
 
 
235 aa  119  6e-26  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3875  binding-protein-dependent transport systems inner membrane component  38.57 
 
 
235 aa  114  1.0000000000000001e-24  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_4078  binding-protein-dependent transport systems inner membrane component  38.57 
 
 
235 aa  114  1.0000000000000001e-24  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4720  ABC transporter, permease protein  36.7 
 
 
235 aa  113  2.0000000000000002e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010531  Pnec_0569  binding-protein-dependent transport systems inner membrane component  47.97 
 
 
139 aa  113  2.0000000000000002e-24  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0123  binding-protein-dependent transport systems inner membrane component  36.84 
 
 
235 aa  113  3e-24  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3968  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
235 aa  112  7.000000000000001e-24  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0086  binding-protein-dependent transport systems inner membrane component  34.67 
 
 
235 aa  111  9e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_4263  binding-protein-dependent transport systems inner membrane component  37.61 
 
 
235 aa  110  2.0000000000000002e-23  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_4458  binding-protein-dependent transport systems inner membrane component  37.61 
 
 
235 aa  110  2.0000000000000002e-23  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0081  binding-protein-dependent transport systems inner membrane component  37.61 
 
 
235 aa  110  2.0000000000000002e-23  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_4318  binding-protein-dependent transport systems inner membrane component  37.61 
 
 
235 aa  110  2.0000000000000002e-23  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2558  molybdate ABC transporter, inner membrane subunit  36.11 
 
 
293 aa  91.7  8e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  decreased coverage  0.000169531  normal  0.108126 
 
 
-
 
NC_011071  Smal_2227  molybdate ABC transporter, inner membrane subunit  37.8 
 
 
227 aa  87  2e-16  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.262345  normal 
 
 
-
 
NC_013501  Rmar_0055  molybdate ABC transporter, inner membrane subunit  32.55 
 
 
220 aa  81.6  0.000000000000009  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1578  molybdate ABC transporter, inner membrane subunit  33.95 
 
 
223 aa  80.1  0.00000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1736  NifC-like ABC-type porter  30.65 
 
 
270 aa  79.7  0.00000000000004  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0327  molybdate ABC transporter, inner membrane subunit  34.72 
 
 
273 aa  79  0.00000000000006  Thermobifida fusca YX  Bacteria  normal  0.0249986  n/a   
 
 
-
 
NC_002977  MCA2579  molybdenum ABC transporter, permease protein  36.06 
 
 
222 aa  78.2  0.0000000000001  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_1555  molybdenum ABC transporter, permease protein  30.77 
 
 
241 aa  77.8  0.0000000000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009051  Memar_0650  NifC-like ABC-type porter  31.55 
 
 
270 aa  77.4  0.0000000000002  Methanoculleus marisnigri JR1  Archaea  normal  0.0108436  n/a   
 
 
-
 
NC_007514  Cag_0414  molybdate ABC transporter permease  30.23 
 
 
228 aa  77.4  0.0000000000002  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
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