More than 300 homologs were found in PanDaTox collection
for query gene Vapar_1588 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_1588  binding-protein-dependent transport systems inner membrane component  100 
 
 
251 aa  472  1e-132  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3129  binding-protein-dependent transport systems inner membrane component  75.51 
 
 
245 aa  316  2e-85  Acidovorax sp. JS42  Bacteria  normal  normal  0.682243 
 
 
-
 
NC_011992  Dtpsy_2476  binding-protein-dependent transport systems inner membrane component  75.62 
 
 
242 aa  311  5.999999999999999e-84  Acidovorax ebreus TPSY  Bacteria  normal  0.8915  n/a   
 
 
-
 
NC_007908  Rfer_2869  binding-protein-dependent transport systems inner membrane component  77.43 
 
 
260 aa  298  4e-80  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1758  binding-protein-dependent transport systems inner membrane component  78.54 
 
 
257 aa  297  1e-79  Polaromonas sp. JS666  Bacteria  normal  normal  0.175288 
 
 
-
 
NC_008781  Pnap_1509  binding-protein-dependent transport systems inner membrane component  78.54 
 
 
254 aa  273  1.0000000000000001e-72  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2437  binding-protein-dependent transport systems inner membrane component  56.33 
 
 
230 aa  228  6e-59  Chelativorans sp. BNC1  Bacteria  normal  0.829623  n/a   
 
 
-
 
NC_010524  Lcho_1813  putative permease component of ABC transporter  63.86 
 
 
238 aa  223  3e-57  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00043828 
 
 
-
 
NC_010511  M446_3942  binding-protein-dependent transport systems inner membrane component  62.04 
 
 
231 aa  213  1.9999999999999998e-54  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0272486 
 
 
-
 
NC_009621  Smed_5503  binding-protein-dependent transport systems inner membrane component  58.38 
 
 
241 aa  212  4.9999999999999996e-54  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1392  binding-protein-dependent transport systems inner membrane component  52.14 
 
 
231 aa  211  5.999999999999999e-54  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3765  binding-protein-dependent transport systems inner membrane component  56.33 
 
 
241 aa  209  3e-53  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2968  binding-protein-dependent transport systems inner membrane component  55.56 
 
 
231 aa  203  2e-51  Methylobacterium populi BJ001  Bacteria  normal  0.946732  normal 
 
 
-
 
NC_011757  Mchl_3076  binding-protein-dependent transport systems inner membrane component  58.25 
 
 
231 aa  198  7.999999999999999e-50  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0752148  normal 
 
 
-
 
NC_010172  Mext_2850  binding-protein-dependent transport systems inner membrane component  58.25 
 
 
246 aa  197  1.0000000000000001e-49  Methylobacterium extorquens PA1  Bacteria  normal  0.402937  normal 
 
 
-
 
NC_008340  Mlg_2740  binding-protein-dependent transport systems inner membrane component  54.77 
 
 
232 aa  196  3e-49  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.726638 
 
 
-
 
NC_009952  Dshi_0626  basic organic compound ABC-transporter  54.93 
 
 
228 aa  195  5.000000000000001e-49  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3625  binding-protein-dependent transport systems inner membrane component  60.49 
 
 
231 aa  194  2e-48  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2806  binding-protein-dependent transport systems inner membrane component  51.52 
 
 
234 aa  191  1e-47  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2223  putative permease component of ABC transporter  68.8 
 
 
252 aa  188  5.999999999999999e-47  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_6167  binding-protein-dependent transport systems inner membrane component  56.25 
 
 
230 aa  185  5e-46  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.931122 
 
 
-
 
NC_013173  Dbac_3403  binding-protein-dependent transport systems inner membrane component  44.74 
 
 
229 aa  182  6e-45  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.669819  n/a   
 
 
-
 
NC_013223  Dret_2397  binding-protein-dependent transport systems inner membrane component  43.72 
 
 
231 aa  179  4.999999999999999e-44  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008942  Mlab_0466  hypothetical protein  40.89 
 
 
235 aa  176  4e-43  Methanocorpusculum labreanum Z  Archaea  normal  0.700584  normal 
 
 
-
 
NC_009051  Memar_1878  binding-protein-dependent transport systems inner membrane component  43.56 
 
 
231 aa  174  9.999999999999999e-43  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_009051  Memar_1893  binding-protein-dependent transport systems inner membrane component  45.7 
 
 
233 aa  174  1.9999999999999998e-42  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_009802  CCC13826_0203  ABC transporter, permease protein  39.13 
 
 
230 aa  167  1e-40  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0028  binding-protein-dependent transport systems inner membrane component  45.75 
 
 
230 aa  164  1.0000000000000001e-39  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000259316  normal  0.154621 
 
 
-
 
NC_008553  Mthe_1203  binding-protein-dependent transport systems inner membrane component  37.72 
 
 
228 aa  163  2.0000000000000002e-39  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02263  hypothetical protein  42.73 
 
 
232 aa  161  7e-39  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU2701  ABC transporter, permease protein  46.02 
 
 
228 aa  160  1e-38  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0928  ABC-type transport system, permease subunit  44.09 
 
 
228 aa  160  2e-38  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1131  ABC transporter, permease protein  43.24 
 
 
232 aa  160  2e-38  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003505  ABC-type tungstate transport system permease protein  42.29 
 
 
232 aa  158  1e-37  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0123  ABC transporter, permease protein  45.41 
 
 
235 aa  157  1e-37  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.749352 
 
 
-
 
NC_011883  Ddes_1777  binding-protein-dependent transport systems inner membrane component  42.48 
 
 
231 aa  156  3e-37  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.753761  n/a   
 
 
-
 
NC_013165  Shel_27150  ABC-type tungstate transport system, periplasmic component  43.3 
 
 
248 aa  156  4e-37  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.544705  normal 
 
 
-
 
NC_007796  Mhun_0520  binding-protein-dependent transport systems inner membrane component  38.73 
 
 
228 aa  155  5.0000000000000005e-37  Methanospirillum hungatei JF-1  Archaea  normal  0.40002  normal  0.449442 
 
 
-
 
NC_010718  Nther_0328  binding-protein-dependent transport systems inner membrane component  40.99 
 
 
234 aa  155  6e-37  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00042229  normal  0.158089 
 
 
-
 
NC_007517  Gmet_1040  binding-protein dependent transport system inner membrane protein  44.69 
 
 
228 aa  155  6e-37  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000000111264  hitchhiker  0.0000000335509 
 
 
-
 
NC_007519  Dde_0233  ABC transporter, permease protein  42.54 
 
 
232 aa  154  1e-36  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1710  tungstate ABC transporter, permease protein, putative  38.43 
 
 
228 aa  150  1e-35  Campylobacter jejuni RM1221  Bacteria  normal  0.506083  n/a   
 
 
-
 
NC_009707  JJD26997_1891  putative tungstate ABC transporter, permease protein  38.43 
 
 
228 aa  151  1e-35  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_1524  tungstate ABC transporter, permease protein, putative  38.43 
 
 
228 aa  150  1e-35  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2224  binding-protein-dependent transport systems inner membrane component  42.92 
 
 
231 aa  150  3e-35  Desulfovibrio vulgaris DP4  Bacteria  normal  0.89872  normal 
 
 
-
 
NC_011832  Mpal_2303  binding-protein-dependent transport systems inner membrane component  36.56 
 
 
231 aa  149  4e-35  Methanosphaerula palustris E1-9c  Archaea  normal  0.105994  normal  0.374369 
 
 
-
 
NC_010718  Nther_2285  binding-protein-dependent transport systems inner membrane component  47.18 
 
 
229 aa  147  2.0000000000000003e-34  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.000107267  normal 
 
 
-
 
NC_012918  GM21_2527  binding-protein-dependent transport systems inner membrane component  38.96 
 
 
232 aa  146  4.0000000000000006e-34  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00176301 
 
 
-
 
NC_009901  Spea_4095  binding-protein-dependent transport systems inner membrane component  44.09 
 
 
235 aa  144  2e-33  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0068  binding-protein dependent transport system inner membrane protein  38.96 
 
 
245 aa  144  2e-33  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0463742  normal  0.217149 
 
 
-
 
NC_011146  Gbem_1694  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
232 aa  143  3e-33  Geobacter bemidjiensis Bem  Bacteria  normal  0.754071  n/a   
 
 
-
 
NC_008345  Sfri_3918  binding-protein-dependent transport systems inner membrane component  44.7 
 
 
235 aa  143  3e-33  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0186248  n/a   
 
 
-
 
NC_009438  Sputcn32_3880  binding-protein-dependent transport systems inner membrane component  44.34 
 
 
235 aa  140  1.9999999999999998e-32  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3543  binding-protein-dependent transport systems inner membrane component  40.69 
 
 
232 aa  140  1.9999999999999998e-32  Geobacter uraniireducens Rf4  Bacteria  normal  0.0152138  n/a   
 
 
-
 
NC_010424  Daud_1541  binding-protein-dependent transport systems inner membrane component  45.79 
 
 
217 aa  140  3e-32  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0915654  n/a   
 
 
-
 
NC_010320  Teth514_1387  binding-protein-dependent transport systems inner membrane component  46.04 
 
 
232 aa  140  3e-32  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2083  binding-protein-dependent transport systems inner membrane component  42.29 
 
 
235 aa  139  4.999999999999999e-32  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_2295  binding-protein-dependent transport systems inner membrane component  41.29 
 
 
238 aa  137  1e-31  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008609  Ppro_0891  binding-protein-dependent transport systems inner membrane component  39.39 
 
 
232 aa  137  2e-31  Pelobacter propionicus DSM 2379  Bacteria  normal  0.819313  n/a   
 
 
-
 
NC_008346  Swol_1632  sulfate/tungstate ABC transporter permease  45.6 
 
 
225 aa  136  3.0000000000000003e-31  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1649  binding-protein-dependent transport systems inner membrane component  38.7 
 
 
231 aa  136  3.0000000000000003e-31  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0825  binding-protein-dependent transport systems inner membrane component  36.95 
 
 
210 aa  134  9.999999999999999e-31  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00592133  n/a   
 
 
-
 
NC_011769  DvMF_2781  binding-protein-dependent transport systems inner membrane component  41.95 
 
 
231 aa  132  3.9999999999999996e-30  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_4039  binding-protein dependent transport system inner membrane protein  42.18 
 
 
250 aa  130  3e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.564931 
 
 
-
 
NC_010506  Swoo_0086  binding-protein-dependent transport systems inner membrane component  41.94 
 
 
235 aa  130  3e-29  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0123  binding-protein-dependent transport systems inner membrane component  44.62 
 
 
235 aa  130  3e-29  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2631  transmembrane ABC transporter protein  47.12 
 
 
235 aa  129  4.0000000000000003e-29  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0364359  normal  0.493142 
 
 
-
 
NC_009092  Shew_3684  binding-protein-dependent transport systems inner membrane component  43.64 
 
 
235 aa  129  5.0000000000000004e-29  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_4318  binding-protein-dependent transport systems inner membrane component  46.49 
 
 
235 aa  128  1.0000000000000001e-28  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_4263  binding-protein-dependent transport systems inner membrane component  46.49 
 
 
235 aa  128  1.0000000000000001e-28  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0081  binding-protein-dependent transport systems inner membrane component  46.49 
 
 
235 aa  128  1.0000000000000001e-28  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4458  binding-protein-dependent transport systems inner membrane component  46.49 
 
 
235 aa  128  1.0000000000000001e-28  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3875  binding-protein-dependent transport systems inner membrane component  43.48 
 
 
235 aa  127  2.0000000000000002e-28  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3968  binding-protein-dependent transport systems inner membrane component  43.48 
 
 
235 aa  127  2.0000000000000002e-28  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_4078  binding-protein-dependent transport systems inner membrane component  43.48 
 
 
235 aa  126  3e-28  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2866  binding-protein-dependent transport systems inner membrane component  46.57 
 
 
235 aa  125  6e-28  Ralstonia pickettii 12J  Bacteria  normal  0.370655  normal 
 
 
-
 
NC_007347  Reut_A2781  binding-protein dependent transport system inner membrane protein  40.71 
 
 
232 aa  125  6e-28  Ralstonia eutropha JMP134  Bacteria  normal  0.24732  n/a   
 
 
-
 
NC_013924  Nmag_3966  binding-protein-dependent transport systems inner membrane component  37.89 
 
 
238 aa  125  7e-28  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_012029  Hlac_2056  binding-protein-dependent transport systems inner membrane component  38.81 
 
 
238 aa  125  7e-28  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.202188  normal  0.0740354 
 
 
-
 
NC_009253  Dred_2270  binding-protein-dependent transport systems inner membrane component  41.78 
 
 
232 aa  125  7e-28  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4720  ABC transporter, permease protein  43.48 
 
 
235 aa  124  1e-27  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008698  Tpen_1794  binding-protein-dependent transport systems inner membrane component  44.44 
 
 
218 aa  124  2e-27  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2460  binding-protein-dependent transport systems inner membrane component  46.08 
 
 
235 aa  122  6e-27  Ralstonia pickettii 12D  Bacteria  normal  0.455343  normal  0.828531 
 
 
-
 
NC_007973  Rmet_2918  binding-protein-dependent transport systems inner membrane component  37.79 
 
 
232 aa  121  9.999999999999999e-27  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1681  binding-protein-dependent transport systems inner membrane component  34.76 
 
 
209 aa  120  1.9999999999999998e-26  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1722  binding-protein-dependent transport systems inner membrane component  40.3 
 
 
239 aa  120  1.9999999999999998e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009943  Dole_2630  binding-protein-dependent transport systems inner membrane component  37.17 
 
 
229 aa  120  1.9999999999999998e-26  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_012030  Hlac_3453  binding-protein-dependent transport systems inner membrane component  36.89 
 
 
238 aa  119  6e-26  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_009635  Maeo_0472  binding-protein-dependent transport systems inner membrane component  30.52 
 
 
234 aa  108  1e-22  Methanococcus aeolicus Nankai-3  Archaea  normal  0.183215  n/a   
 
 
-
 
NC_010531  Pnec_0569  binding-protein-dependent transport systems inner membrane component  45.9 
 
 
139 aa  105  5e-22  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_008701  Pisl_0047  binding-protein-dependent transport systems inner membrane component  36.65 
 
 
214 aa  84  0.000000000000002  Pyrobaculum islandicum DSM 4184  Archaea  normal  normal 
 
 
-
 
NC_008786  Veis_2887  molybdate ABC transporter, inner membrane subunit  34.58 
 
 
226 aa  82.8  0.000000000000005  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0388604  normal  0.0334765 
 
 
-
 
NC_010531  Pnec_0568  binding-protein-dependent transport systems inner membrane component  78.85 
 
 
60 aa  78.2  0.0000000000001  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2343  molybdate ABC transporter, inner membrane subunit  29.67 
 
 
221 aa  72.8  0.000000000005  Spirosoma linguale DSM 74  Bacteria  normal  0.367672  normal  0.691187 
 
 
-
 
NC_007908  Rfer_1761  Sulfate ABC transporter, permease protein CysT  29.51 
 
 
293 aa  72.8  0.000000000005  Rhodoferax ferrireducens T118  Bacteria  normal  0.382351  n/a   
 
 
-
 
NC_008346  Swol_1555  molybdenum ABC transporter, permease protein  29.77 
 
 
241 aa  72.4  0.000000000006  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_3142  molybdate ABC transporter, inner membrane subunit  28.99 
 
 
224 aa  72  0.000000000009  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009376  Pars_0644  binding-protein-dependent transport systems inner membrane component  35.75 
 
 
214 aa  70.9  0.00000000002  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal 
 
 
-
 
NC_007955  Mbur_1552  molybdate ABC transporter inner membrane protein  33.82 
 
 
222 aa  70.5  0.00000000002  Methanococcoides burtonii DSM 6242  Archaea  normal  0.044111  n/a   
 
 
-
 
NC_010525  Tneu_0965  binding-protein-dependent transport systems inner membrane component  37.7 
 
 
214 aa  71.2  0.00000000002  Thermoproteus neutrophilus V24Sta  Archaea  normal  hitchhiker  0.00460897 
 
 
-
 
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