More than 300 homologs were found in PanDaTox collection
for query gene Sfri_3918 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008345  Sfri_3918  binding-protein-dependent transport systems inner membrane component  100 
 
 
235 aa  462  1e-129  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0186248  n/a   
 
 
-
 
NC_009438  Sputcn32_3880  binding-protein-dependent transport systems inner membrane component  85.96 
 
 
235 aa  374  1e-103  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_4095  binding-protein-dependent transport systems inner membrane component  81.28 
 
 
235 aa  366  1e-100  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_4263  binding-protein-dependent transport systems inner membrane component  88.51 
 
 
235 aa  354  6.999999999999999e-97  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_4318  binding-protein-dependent transport systems inner membrane component  88.51 
 
 
235 aa  354  6.999999999999999e-97  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4458  binding-protein-dependent transport systems inner membrane component  88.51 
 
 
235 aa  354  6.999999999999999e-97  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0081  binding-protein-dependent transport systems inner membrane component  88.51 
 
 
235 aa  354  6.999999999999999e-97  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0086  binding-protein-dependent transport systems inner membrane component  80.85 
 
 
235 aa  349  2e-95  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3968  binding-protein-dependent transport systems inner membrane component  85.53 
 
 
235 aa  348  6e-95  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3875  binding-protein-dependent transport systems inner membrane component  85.53 
 
 
235 aa  347  1e-94  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_4078  binding-protein-dependent transport systems inner membrane component  85.11 
 
 
235 aa  345  3e-94  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0123  ABC transporter, permease protein  75.74 
 
 
235 aa  345  3e-94  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.749352 
 
 
-
 
NC_004347  SO_4720  ABC transporter, permease protein  85.53 
 
 
235 aa  344  7e-94  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_3684  binding-protein-dependent transport systems inner membrane component  82.05 
 
 
235 aa  342  2.9999999999999997e-93  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0123  binding-protein-dependent transport systems inner membrane component  80.43 
 
 
235 aa  323  1e-87  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_02263  hypothetical protein  58.93 
 
 
232 aa  267  8e-71  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A1131  ABC transporter, permease protein  59.82 
 
 
232 aa  265  2.9999999999999995e-70  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003505  ABC-type tungstate transport system permease protein  58.04 
 
 
232 aa  261  8e-69  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2083  binding-protein-dependent transport systems inner membrane component  52.58 
 
 
235 aa  197  1.0000000000000001e-49  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008553  Mthe_1203  binding-protein-dependent transport systems inner membrane component  42.66 
 
 
228 aa  177  1e-43  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_013173  Dbac_3403  binding-protein-dependent transport systems inner membrane component  42.99 
 
 
229 aa  174  9.999999999999999e-43  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.669819  n/a   
 
 
-
 
NC_008942  Mlab_0466  hypothetical protein  40.45 
 
 
235 aa  172  5e-42  Methanocorpusculum labreanum Z  Archaea  normal  0.700584  normal 
 
 
-
 
NC_007519  Dde_0233  ABC transporter, permease protein  44.44 
 
 
232 aa  169  2e-41  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0928  ABC-type transport system, permease subunit  42.99 
 
 
228 aa  169  3e-41  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_2303  binding-protein-dependent transport systems inner membrane component  39.55 
 
 
231 aa  167  2e-40  Methanosphaerula palustris E1-9c  Archaea  normal  0.105994  normal  0.374369 
 
 
-
 
NC_007796  Mhun_0520  binding-protein-dependent transport systems inner membrane component  42.08 
 
 
228 aa  163  2.0000000000000002e-39  Methanospirillum hungatei JF-1  Archaea  normal  0.40002  normal  0.449442 
 
 
-
 
NC_007347  Reut_A2781  binding-protein dependent transport system inner membrane protein  47 
 
 
232 aa  160  1e-38  Ralstonia eutropha JMP134  Bacteria  normal  0.24732  n/a   
 
 
-
 
NC_013223  Dret_2397  binding-protein-dependent transport systems inner membrane component  39.82 
 
 
231 aa  161  1e-38  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2224  binding-protein-dependent transport systems inner membrane component  47.03 
 
 
231 aa  160  1e-38  Desulfovibrio vulgaris DP4  Bacteria  normal  0.89872  normal 
 
 
-
 
NC_010718  Nther_0328  binding-protein-dependent transport systems inner membrane component  39.82 
 
 
234 aa  159  2e-38  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00042229  normal  0.158089 
 
 
-
 
NC_009802  CCC13826_0203  ABC transporter, permease protein  38.67 
 
 
230 aa  159  4e-38  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2918  binding-protein-dependent transport systems inner membrane component  43.12 
 
 
232 aa  155  4e-37  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_1777  binding-protein-dependent transport systems inner membrane component  43.64 
 
 
231 aa  155  8e-37  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.753761  n/a   
 
 
-
 
NC_003295  RSc2631  transmembrane ABC transporter protein  48.07 
 
 
235 aa  152  4e-36  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0364359  normal  0.493142 
 
 
-
 
NC_010682  Rpic_2866  binding-protein-dependent transport systems inner membrane component  48.74 
 
 
235 aa  151  7e-36  Ralstonia pickettii 12J  Bacteria  normal  0.370655  normal 
 
 
-
 
NC_012856  Rpic12D_2460  binding-protein-dependent transport systems inner membrane component  48.74 
 
 
235 aa  150  1e-35  Ralstonia pickettii 12D  Bacteria  normal  0.455343  normal  0.828531 
 
 
-
 
NC_008787  CJJ81176_1524  tungstate ABC transporter, permease protein, putative  38.67 
 
 
228 aa  149  5e-35  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1891  putative tungstate ABC transporter, permease protein  38.22 
 
 
228 aa  148  7e-35  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1392  binding-protein-dependent transport systems inner membrane component  41.38 
 
 
231 aa  147  9e-35  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1710  tungstate ABC transporter, permease protein, putative  38.22 
 
 
228 aa  147  1.0000000000000001e-34  Campylobacter jejuni RM1221  Bacteria  normal  0.506083  n/a   
 
 
-
 
NC_009051  Memar_1893  binding-protein-dependent transport systems inner membrane component  36.64 
 
 
233 aa  145  6e-34  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_009051  Memar_1878  binding-protein-dependent transport systems inner membrane component  37.56 
 
 
231 aa  144  1e-33  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_012918  GM21_2527  binding-protein-dependent transport systems inner membrane component  36.32 
 
 
232 aa  142  3e-33  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00176301 
 
 
-
 
NC_011146  Gbem_1694  binding-protein-dependent transport systems inner membrane component  35.87 
 
 
232 aa  142  6e-33  Geobacter bemidjiensis Bem  Bacteria  normal  0.754071  n/a   
 
 
-
 
NC_011992  Dtpsy_2476  binding-protein-dependent transport systems inner membrane component  45.03 
 
 
242 aa  141  8e-33  Acidovorax ebreus TPSY  Bacteria  normal  0.8915  n/a   
 
 
-
 
NC_008782  Ajs_3129  binding-protein-dependent transport systems inner membrane component  45.03 
 
 
245 aa  141  9e-33  Acidovorax sp. JS42  Bacteria  normal  normal  0.682243 
 
 
-
 
NC_007644  Moth_0068  binding-protein dependent transport system inner membrane protein  39.13 
 
 
245 aa  140  9.999999999999999e-33  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0463742  normal  0.217149 
 
 
-
 
NC_002939  GSU2701  ABC transporter, permease protein  39.21 
 
 
228 aa  140  1.9999999999999998e-32  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1649  binding-protein-dependent transport systems inner membrane component  37.93 
 
 
231 aa  137  1e-31  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2806  binding-protein-dependent transport systems inner membrane component  38.33 
 
 
234 aa  136  4e-31  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_012029  Hlac_2056  binding-protein-dependent transport systems inner membrane component  35.89 
 
 
238 aa  135  6.0000000000000005e-31  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.202188  normal  0.0740354 
 
 
-
 
NC_010725  Mpop_2968  binding-protein-dependent transport systems inner membrane component  37.84 
 
 
231 aa  135  8e-31  Methylobacterium populi BJ001  Bacteria  normal  0.946732  normal 
 
 
-
 
NC_007517  Gmet_1040  binding-protein dependent transport system inner membrane protein  39.37 
 
 
228 aa  134  9e-31  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000000111264  hitchhiker  0.0000000335509 
 
 
-
 
NC_009483  Gura_3543  binding-protein-dependent transport systems inner membrane component  37.33 
 
 
232 aa  132  3.9999999999999996e-30  Geobacter uraniireducens Rf4  Bacteria  normal  0.0152138  n/a   
 
 
-
 
NC_008609  Ppro_0891  binding-protein-dependent transport systems inner membrane component  37.12 
 
 
232 aa  132  3.9999999999999996e-30  Pelobacter propionicus DSM 2379  Bacteria  normal  0.819313  n/a   
 
 
-
 
NC_011769  DvMF_2781  binding-protein-dependent transport systems inner membrane component  44.44 
 
 
231 aa  131  1.0000000000000001e-29  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011757  Mchl_3076  binding-protein-dependent transport systems inner membrane component  38.54 
 
 
231 aa  131  1.0000000000000001e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0752148  normal 
 
 
-
 
NC_008554  Sfum_0028  binding-protein-dependent transport systems inner membrane component  38.83 
 
 
230 aa  130  1.0000000000000001e-29  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000259316  normal  0.154621 
 
 
-
 
NC_010172  Mext_2850  binding-protein-dependent transport systems inner membrane component  38.05 
 
 
246 aa  130  1.0000000000000001e-29  Methylobacterium extorquens PA1  Bacteria  normal  0.402937  normal 
 
 
-
 
NC_013743  Htur_2295  binding-protein-dependent transport systems inner membrane component  34.88 
 
 
238 aa  130  2.0000000000000002e-29  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_012791  Vapar_1588  binding-protein-dependent transport systems inner membrane component  44.39 
 
 
251 aa  127  1.0000000000000001e-28  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6167  binding-protein-dependent transport systems inner membrane component  39.2 
 
 
230 aa  127  1.0000000000000001e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.931122 
 
 
-
 
NC_010718  Nther_2285  binding-protein-dependent transport systems inner membrane component  38.73 
 
 
229 aa  127  2.0000000000000002e-28  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.000107267  normal 
 
 
-
 
NC_013165  Shel_27150  ABC-type tungstate transport system, periplasmic component  35.24 
 
 
248 aa  127  2.0000000000000002e-28  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.544705  normal 
 
 
-
 
NC_010511  M446_3942  binding-protein-dependent transport systems inner membrane component  40.49 
 
 
231 aa  125  6e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0272486 
 
 
-
 
NC_012030  Hlac_3453  binding-protein-dependent transport systems inner membrane component  34.91 
 
 
238 aa  125  6e-28  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_011894  Mnod_3625  binding-protein-dependent transport systems inner membrane component  37.82 
 
 
231 aa  125  7e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2869  binding-protein-dependent transport systems inner membrane component  41.71 
 
 
260 aa  125  7e-28  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2630  binding-protein-dependent transport systems inner membrane component  41.35 
 
 
229 aa  125  8.000000000000001e-28  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3765  binding-protein-dependent transport systems inner membrane component  40 
 
 
241 aa  125  8.000000000000001e-28  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1387  binding-protein-dependent transport systems inner membrane component  39.42 
 
 
232 aa  124  1e-27  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1722  binding-protein-dependent transport systems inner membrane component  37.11 
 
 
239 aa  122  5e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008254  Meso_2437  binding-protein-dependent transport systems inner membrane component  38.78 
 
 
230 aa  120  9.999999999999999e-27  Chelativorans sp. BNC1  Bacteria  normal  0.829623  n/a   
 
 
-
 
NC_009635  Maeo_0472  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
234 aa  120  1.9999999999999998e-26  Methanococcus aeolicus Nankai-3  Archaea  normal  0.183215  n/a   
 
 
-
 
NC_008340  Mlg_2740  binding-protein-dependent transport systems inner membrane component  36.84 
 
 
232 aa  120  1.9999999999999998e-26  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.726638 
 
 
-
 
NC_009621  Smed_5503  binding-protein-dependent transport systems inner membrane component  37 
 
 
241 aa  118  6e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1758  binding-protein-dependent transport systems inner membrane component  44.21 
 
 
257 aa  118  7e-26  Polaromonas sp. JS666  Bacteria  normal  normal  0.175288 
 
 
-
 
NC_009952  Dshi_0626  basic organic compound ABC-transporter  35.24 
 
 
228 aa  117  1.9999999999999998e-25  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013924  Nmag_3966  binding-protein-dependent transport systems inner membrane component  33.03 
 
 
238 aa  117  1.9999999999999998e-25  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008346  Swol_1632  sulfate/tungstate ABC transporter permease  37.63 
 
 
225 aa  116  3e-25  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0825  binding-protein-dependent transport systems inner membrane component  34.5 
 
 
210 aa  115  6e-25  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00592133  n/a   
 
 
-
 
NC_013517  Sterm_1681  binding-protein-dependent transport systems inner membrane component  35.27 
 
 
209 aa  114  1.0000000000000001e-24  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1813  putative permease component of ABC transporter  40.61 
 
 
238 aa  114  1.0000000000000001e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00043828 
 
 
-
 
NC_007413  Ava_4039  binding-protein dependent transport system inner membrane protein  38.35 
 
 
250 aa  113  2.0000000000000002e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.564931 
 
 
-
 
NC_008781  Pnap_1509  binding-protein-dependent transport systems inner membrane component  43.68 
 
 
254 aa  111  8.000000000000001e-24  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_2270  binding-protein-dependent transport systems inner membrane component  38.6 
 
 
232 aa  111  1.0000000000000001e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1541  binding-protein-dependent transport systems inner membrane component  37.44 
 
 
217 aa  108  9.000000000000001e-23  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0915654  n/a   
 
 
-
 
NC_009637  MmarC7_1208  molybdate ABC transporter, inner membrane subunit  26.98 
 
 
221 aa  87.8  1e-16  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_009135  MmarC5_1454  molybdate ABC transporter, inner membrane subunit  26.32 
 
 
221 aa  86.3  4e-16  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009051  Memar_0650  NifC-like ABC-type porter  29.41 
 
 
270 aa  85.1  9e-16  Methanoculleus marisnigri JR1  Archaea  normal  0.0108436  n/a   
 
 
-
 
NC_012793  GWCH70_1738  molybdate ABC transporter, inner membrane subunit  29.06 
 
 
224 aa  84.3  0.000000000000001  Geobacillus sp. WCH70  Bacteria  normal  0.537538  n/a   
 
 
-
 
NC_013946  Mrub_1922  molybdate ABC transporter inner membrane subunit  29.25 
 
 
226 aa  84.3  0.000000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.454749  hitchhiker  0.00000014935 
 
 
-
 
NC_011004  Rpal_0820  sulfate ABC transporter, inner membrane subunit CysT  28.51 
 
 
278 aa  84.3  0.000000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.073979  n/a   
 
 
-
 
NC_009483  Gura_3322  molybdate ABC transporter, inner membrane subunit  29.96 
 
 
227 aa  83.2  0.000000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0747  molybdate ABC transporter, inner membrane subunit  25.89 
 
 
221 aa  82.8  0.000000000000004  Methanococcus maripaludis C6  Archaea  normal  0.831399  n/a   
 
 
-
 
NC_008609  Ppro_1458  molybdate ABC transporter, inner membrane subunit  34.16 
 
 
227 aa  83.2  0.000000000000004  Pelobacter propionicus DSM 2379  Bacteria  normal  0.363014  n/a   
 
 
-
 
NC_013216  Dtox_3445  molybdate ABC transporter, inner membrane subunit  30.73 
 
 
223 aa  80.9  0.00000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3463  molybdate ABC transporter, inner membrane subunit  30.43 
 
 
275 aa  81.6  0.00000000000001  Conexibacter woesei DSM 14684  Bacteria  decreased coverage  0.00996182  normal  0.141718 
 
 
-
 
NC_007964  Nham_3559  Sulfate ABC transporter, permease protein CysT  28.85 
 
 
278 aa  81.3  0.00000000000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_0211  NifC-like ABC-type porter  27.45 
 
 
288 aa  80.5  0.00000000000002  Methanosphaerula palustris E1-9c  Archaea  normal  0.86371  normal  0.768111 
 
 
-
 
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