More than 300 homologs were found in PanDaTox collection
for query gene Shew_3684 on replicon NC_009092
Organism: Shewanella loihica PV-4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009092  Shew_3684  binding-protein-dependent transport systems inner membrane component  100 
 
 
235 aa  460  1e-129  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_4095  binding-protein-dependent transport systems inner membrane component  87.61 
 
 
235 aa  394  1e-109  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0086  binding-protein-dependent transport systems inner membrane component  88.89 
 
 
235 aa  375  1e-103  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3918  binding-protein-dependent transport systems inner membrane component  82.05 
 
 
235 aa  363  1e-99  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0186248  n/a   
 
 
-
 
NC_008700  Sama_0123  ABC transporter, permease protein  78.21 
 
 
235 aa  363  1e-99  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.749352 
 
 
-
 
NC_009438  Sputcn32_3880  binding-protein-dependent transport systems inner membrane component  84.19 
 
 
235 aa  357  9e-98  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0123  binding-protein-dependent transport systems inner membrane component  89.74 
 
 
235 aa  356  1.9999999999999998e-97  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3875  binding-protein-dependent transport systems inner membrane component  87.18 
 
 
235 aa  347  7e-95  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3968  binding-protein-dependent transport systems inner membrane component  87.18 
 
 
235 aa  347  8e-95  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_4078  binding-protein-dependent transport systems inner membrane component  86.75 
 
 
235 aa  346  2e-94  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4720  ABC transporter, permease protein  86.75 
 
 
235 aa  344  7e-94  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_4263  binding-protein-dependent transport systems inner membrane component  86.32 
 
 
235 aa  338  2.9999999999999998e-92  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_4458  binding-protein-dependent transport systems inner membrane component  86.32 
 
 
235 aa  338  2.9999999999999998e-92  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_4318  binding-protein-dependent transport systems inner membrane component  86.32 
 
 
235 aa  338  2.9999999999999998e-92  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0081  binding-protein-dependent transport systems inner membrane component  86.32 
 
 
235 aa  338  2.9999999999999998e-92  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02263  hypothetical protein  59.38 
 
 
232 aa  267  1e-70  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A1131  ABC transporter, permease protein  59.82 
 
 
232 aa  264  1e-69  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003505  ABC-type tungstate transport system permease protein  57.59 
 
 
232 aa  258  4e-68  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2083  binding-protein-dependent transport systems inner membrane component  53.39 
 
 
235 aa  202  3e-51  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0928  ABC-type transport system, permease subunit  43.89 
 
 
228 aa  181  6e-45  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008553  Mthe_1203  binding-protein-dependent transport systems inner membrane component  42.66 
 
 
228 aa  179  2.9999999999999997e-44  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_013173  Dbac_3403  binding-protein-dependent transport systems inner membrane component  43.64 
 
 
229 aa  175  6e-43  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.669819  n/a   
 
 
-
 
NC_013223  Dret_2397  binding-protein-dependent transport systems inner membrane component  40.35 
 
 
231 aa  172  5e-42  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0233  ABC transporter, permease protein  44.44 
 
 
232 aa  172  5.999999999999999e-42  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2781  binding-protein dependent transport system inner membrane protein  48.85 
 
 
232 aa  171  9e-42  Ralstonia eutropha JMP134  Bacteria  normal  0.24732  n/a   
 
 
-
 
NC_011832  Mpal_2303  binding-protein-dependent transport systems inner membrane component  39.46 
 
 
231 aa  171  1e-41  Methanosphaerula palustris E1-9c  Archaea  normal  0.105994  normal  0.374369 
 
 
-
 
NC_008751  Dvul_2224  binding-protein-dependent transport systems inner membrane component  48.64 
 
 
231 aa  170  1e-41  Desulfovibrio vulgaris DP4  Bacteria  normal  0.89872  normal 
 
 
-
 
NC_008942  Mlab_0466  hypothetical protein  39.09 
 
 
235 aa  167  2e-40  Methanocorpusculum labreanum Z  Archaea  normal  0.700584  normal 
 
 
-
 
NC_011883  Ddes_1777  binding-protein-dependent transport systems inner membrane component  42.6 
 
 
231 aa  164  1.0000000000000001e-39  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.753761  n/a   
 
 
-
 
NC_009051  Memar_1893  binding-protein-dependent transport systems inner membrane component  39.22 
 
 
233 aa  164  1.0000000000000001e-39  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_010718  Nther_0328  binding-protein-dependent transport systems inner membrane component  37.44 
 
 
234 aa  161  9e-39  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00042229  normal  0.158089 
 
 
-
 
NC_003295  RSc2631  transmembrane ABC transporter protein  51.23 
 
 
235 aa  160  1e-38  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0364359  normal  0.493142 
 
 
-
 
NC_007973  Rmet_2918  binding-protein-dependent transport systems inner membrane component  43.95 
 
 
232 aa  160  1e-38  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2866  binding-protein-dependent transport systems inner membrane component  49.28 
 
 
235 aa  158  5e-38  Ralstonia pickettii 12J  Bacteria  normal  0.370655  normal 
 
 
-
 
NC_007796  Mhun_0520  binding-protein-dependent transport systems inner membrane component  38.91 
 
 
228 aa  158  8e-38  Methanospirillum hungatei JF-1  Archaea  normal  0.40002  normal  0.449442 
 
 
-
 
NC_012856  Rpic12D_2460  binding-protein-dependent transport systems inner membrane component  48.79 
 
 
235 aa  155  5.0000000000000005e-37  Ralstonia pickettii 12D  Bacteria  normal  0.455343  normal  0.828531 
 
 
-
 
NC_008787  CJJ81176_1524  tungstate ABC transporter, permease protein, putative  38.99 
 
 
228 aa  155  5.0000000000000005e-37  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1891  putative tungstate ABC transporter, permease protein  38.53 
 
 
228 aa  154  8e-37  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1710  tungstate ABC transporter, permease protein, putative  38.53 
 
 
228 aa  154  1e-36  Campylobacter jejuni RM1221  Bacteria  normal  0.506083  n/a   
 
 
-
 
NC_010725  Mpop_2968  binding-protein-dependent transport systems inner membrane component  39.64 
 
 
231 aa  152  5.9999999999999996e-36  Methylobacterium populi BJ001  Bacteria  normal  0.946732  normal 
 
 
-
 
NC_009802  CCC13826_0203  ABC transporter, permease protein  36.87 
 
 
230 aa  150  2e-35  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1392  binding-protein-dependent transport systems inner membrane component  41.45 
 
 
231 aa  150  2e-35  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2476  binding-protein-dependent transport systems inner membrane component  43.81 
 
 
242 aa  149  4e-35  Acidovorax ebreus TPSY  Bacteria  normal  0.8915  n/a   
 
 
-
 
NC_012918  GM21_2527  binding-protein-dependent transport systems inner membrane component  36.44 
 
 
232 aa  149  4e-35  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00176301 
 
 
-
 
NC_008782  Ajs_3129  binding-protein-dependent transport systems inner membrane component  43.81 
 
 
245 aa  149  5e-35  Acidovorax sp. JS42  Bacteria  normal  normal  0.682243 
 
 
-
 
NC_002939  GSU2701  ABC transporter, permease protein  41.74 
 
 
228 aa  148  6e-35  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6167  binding-protein-dependent transport systems inner membrane component  42.71 
 
 
230 aa  147  1.0000000000000001e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.931122 
 
 
-
 
NC_009051  Memar_1878  binding-protein-dependent transport systems inner membrane component  35.24 
 
 
231 aa  146  3e-34  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_008554  Sfum_0028  binding-protein-dependent transport systems inner membrane component  38.53 
 
 
230 aa  145  4.0000000000000006e-34  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000259316  normal  0.154621 
 
 
-
 
NC_011146  Gbem_1694  binding-protein-dependent transport systems inner membrane component  35.56 
 
 
232 aa  145  6e-34  Geobacter bemidjiensis Bem  Bacteria  normal  0.754071  n/a   
 
 
-
 
NC_009483  Gura_3543  binding-protein-dependent transport systems inner membrane component  39.11 
 
 
232 aa  144  1e-33  Geobacter uraniireducens Rf4  Bacteria  normal  0.0152138  n/a   
 
 
-
 
NC_013522  Taci_1649  binding-protein-dependent transport systems inner membrane component  38.36 
 
 
231 aa  143  3e-33  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_012029  Hlac_2056  binding-protein-dependent transport systems inner membrane component  37.73 
 
 
238 aa  142  4e-33  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.202188  normal  0.0740354 
 
 
-
 
NC_011757  Mchl_3076  binding-protein-dependent transport systems inner membrane component  38.05 
 
 
231 aa  142  6e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0752148  normal 
 
 
-
 
NC_012030  Hlac_3453  binding-protein-dependent transport systems inner membrane component  37.38 
 
 
238 aa  141  7e-33  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_008609  Ppro_0891  binding-protein-dependent transport systems inner membrane component  39.46 
 
 
232 aa  141  8e-33  Pelobacter propionicus DSM 2379  Bacteria  normal  0.819313  n/a   
 
 
-
 
NC_010172  Mext_2850  binding-protein-dependent transport systems inner membrane component  38.05 
 
 
246 aa  141  9e-33  Methylobacterium extorquens PA1  Bacteria  normal  0.402937  normal 
 
 
-
 
NC_011769  DvMF_2781  binding-protein-dependent transport systems inner membrane component  45.45 
 
 
231 aa  140  1.9999999999999998e-32  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007908  Rfer_2869  binding-protein-dependent transport systems inner membrane component  43.85 
 
 
260 aa  140  1.9999999999999998e-32  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2806  binding-protein-dependent transport systems inner membrane component  39.82 
 
 
234 aa  139  4.999999999999999e-32  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1040  binding-protein dependent transport system inner membrane protein  39.82 
 
 
228 aa  135  4e-31  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000000111264  hitchhiker  0.0000000335509 
 
 
-
 
NC_007644  Moth_0068  binding-protein dependent transport system inner membrane protein  35.81 
 
 
245 aa  135  4e-31  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0463742  normal  0.217149 
 
 
-
 
NC_013743  Htur_2295  binding-protein-dependent transport systems inner membrane component  36.95 
 
 
238 aa  134  9.999999999999999e-31  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_010511  M446_3942  binding-protein-dependent transport systems inner membrane component  40.98 
 
 
231 aa  133  3e-30  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0272486 
 
 
-
 
NC_008043  TM1040_3765  binding-protein-dependent transport systems inner membrane component  41.55 
 
 
241 aa  132  6.999999999999999e-30  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1387  binding-protein-dependent transport systems inner membrane component  38.28 
 
 
232 aa  131  7.999999999999999e-30  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2630  binding-protein-dependent transport systems inner membrane component  41.96 
 
 
229 aa  130  2.0000000000000002e-29  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1813  putative permease component of ABC transporter  42.15 
 
 
238 aa  129  3e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00043828 
 
 
-
 
NC_013165  Shel_27150  ABC-type tungstate transport system, periplasmic component  33.79 
 
 
248 aa  128  7.000000000000001e-29  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.544705  normal 
 
 
-
 
NC_012791  Vapar_1588  binding-protein-dependent transport systems inner membrane component  42.86 
 
 
251 aa  127  1.0000000000000001e-28  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2740  binding-protein-dependent transport systems inner membrane component  39.36 
 
 
232 aa  126  3e-28  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.726638 
 
 
-
 
NC_010718  Nther_2285  binding-protein-dependent transport systems inner membrane component  38.27 
 
 
229 aa  125  6e-28  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.000107267  normal 
 
 
-
 
NC_008254  Meso_2437  binding-protein-dependent transport systems inner membrane component  39.29 
 
 
230 aa  122  3e-27  Chelativorans sp. BNC1  Bacteria  normal  0.829623  n/a   
 
 
-
 
NC_013525  Tter_1722  binding-protein-dependent transport systems inner membrane component  37.38 
 
 
239 aa  122  4e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009952  Dshi_0626  basic organic compound ABC-transporter  36.36 
 
 
228 aa  121  9.999999999999999e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4039  binding-protein dependent transport system inner membrane protein  38.83 
 
 
250 aa  120  1.9999999999999998e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.564931 
 
 
-
 
NC_011894  Mnod_3625  binding-protein-dependent transport systems inner membrane component  35.75 
 
 
231 aa  120  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2270  binding-protein-dependent transport systems inner membrane component  37.73 
 
 
232 aa  119  3e-26  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1758  binding-protein-dependent transport systems inner membrane component  43.46 
 
 
257 aa  119  4.9999999999999996e-26  Polaromonas sp. JS666  Bacteria  normal  normal  0.175288 
 
 
-
 
NC_013924  Nmag_3966  binding-protein-dependent transport systems inner membrane component  33.99 
 
 
238 aa  118  7e-26  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_009621  Smed_5503  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
241 aa  118  7e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1681  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
209 aa  117  9.999999999999999e-26  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0825  binding-protein-dependent transport systems inner membrane component  35.12 
 
 
210 aa  117  1.9999999999999998e-25  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00592133  n/a   
 
 
-
 
NC_009635  Maeo_0472  binding-protein-dependent transport systems inner membrane component  32.09 
 
 
234 aa  114  1.0000000000000001e-24  Methanococcus aeolicus Nankai-3  Archaea  normal  0.183215  n/a   
 
 
-
 
NC_008781  Pnap_1509  binding-protein-dependent transport systems inner membrane component  43.98 
 
 
254 aa  111  8.000000000000001e-24  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1541  binding-protein-dependent transport systems inner membrane component  37.27 
 
 
217 aa  107  1e-22  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0915654  n/a   
 
 
-
 
NC_008346  Swol_1632  sulfate/tungstate ABC transporter permease  34.54 
 
 
225 aa  106  3e-22  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2223  putative permease component of ABC transporter  40.7 
 
 
252 aa  91.3  1e-17  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1922  molybdate ABC transporter inner membrane subunit  31.48 
 
 
226 aa  90.9  2e-17  Meiothermus ruber DSM 1279  Bacteria  normal  0.454749  hitchhiker  0.00000014935 
 
 
-
 
NC_011004  Rpal_0820  sulfate ABC transporter, inner membrane subunit CysT  27.93 
 
 
278 aa  88.6  8e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.073979  n/a   
 
 
-
 
NC_009051  Memar_0650  NifC-like ABC-type porter  28.71 
 
 
270 aa  83.6  0.000000000000002  Methanoculleus marisnigri JR1  Archaea  normal  0.0108436  n/a   
 
 
-
 
NC_009483  Gura_3322  molybdate ABC transporter, inner membrane subunit  30.66 
 
 
227 aa  83.6  0.000000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_1208  molybdate ABC transporter, inner membrane subunit  27.49 
 
 
221 aa  82.8  0.000000000000004  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_012917  PC1_1270  molybdate ABC transporter permease protein  29.56 
 
 
229 aa  82.4  0.000000000000005  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1974  molybdate ABC transporter, inner membrane subunit  32.26 
 
 
227 aa  82.4  0.000000000000006  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2558  molybdate ABC transporter, inner membrane subunit  31.98 
 
 
293 aa  81.6  0.000000000000009  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  decreased coverage  0.000169531  normal  0.108126 
 
 
-
 
NC_007958  RPD_1157  Sulfate ABC transporter, permease protein CysT  26.99 
 
 
279 aa  81.6  0.00000000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.438007 
 
 
-
 
NC_010505  Mrad2831_2330  molybdate ABC transporter, inner membrane subunit  30.27 
 
 
230 aa  80.5  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.447526 
 
 
-
 
NC_007963  Csal_2676  molybdate ABC transporter permease  30.33 
 
 
231 aa  80.9  0.00000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1794  binding-protein-dependent transport systems inner membrane component  32.39 
 
 
218 aa  80.1  0.00000000000003  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
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