Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2960 |
Symbol | |
ID | 7972236 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3120144 |
End bp | 3121031 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644793545 |
Product | sulfate ABC transporter, inner membrane subunit CysT |
Protein accession | YP_002944846 |
Protein GI | 239815936 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0555] ABC-type sulfate transport system, permease component |
TIGRFAM ID | [TIGR00969] sulfate ABC transporter, permease protein [TIGR02139] sulfate ABC transporter, permease protein CysT |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCGGCG CTGTTTCTTC GGCGCTCCCG TCCGCGGGAG CGCCTTTTTC GCGTGCCAAC CGGGCAGGGG GCGCCAAGCG CGTGCTGCCC GGTTTCCACA TCACGCTCGG CTTCTCCATT CTTTACCTGA GCCTGATCGT GCTGATCCCG CTCTCGGCGC TGGTCTTCAA GACCTTCACG CTGAGCTGGG AGCAGTTCTG GGTGGCCGTG ACCGCGCCGC GCGTGATGGC CTCGTACCGG CTGACCTTCG GCGCCTCGCT GATCGCGGCC GTGGTCAACG CGGTGTTCGG CCTGCTCGTG GCCTGGGTGC TGGTGCGCTA CAAGTTCCCG GGCAAGCGCA TCGTCGATGC GCTGGTCGAC CTGCCGTTCG CGCTGCCCAC GGCGGTGGCC GGCATCTCGC TCACGGCGCT GCTCGCGGGC AACGGCTGGA TCGGGCAGCT GCTCGAGCCG CACGGCATCA AGCTCGCGTT CACGCCGGCG GGCATCGTGA TTGCGCTGAT CTTCATCGGC CTGCCGTTCG TGGTGCGCAC GGTGCAGCCG GTGCTCGAAG ACGCCGAGAA GGAGCTCGAG GAAGCCGCCA CGTCGCTCGG TGCGACGCGG CTGCAGACCT TCACCAAGGT AATCTTCCCG TCGATCGCGC CGGCGCTGCT CACGGGCTTT GCGATGGCCT TCGCACGCGC CATCGGCGAG TACGGATCGG TGATCTTCAT TGCCGGCAAC ATGCCGATGA TCTCGGAGAT CACGCCGCTC ATCATCATCG GCAAGCTGGA GCAGTACGAC TTTGCCGGCG CCACCGCGGT CGCGCTCGTG ATGCTGGTCA TTTCATTCCT CTTGCTGCTG GTCATCAACG GCTTGCAGGC CTGGCAGCGC AAGCGCGCGG GAGCTTGA
|
Protein sequence | MSGAVSSALP SAGAPFSRAN RAGGAKRVLP GFHITLGFSI LYLSLIVLIP LSALVFKTFT LSWEQFWVAV TAPRVMASYR LTFGASLIAA VVNAVFGLLV AWVLVRYKFP GKRIVDALVD LPFALPTAVA GISLTALLAG NGWIGQLLEP HGIKLAFTPA GIVIALIFIG LPFVVRTVQP VLEDAEKELE EAATSLGATR LQTFTKVIFP SIAPALLTGF AMAFARAIGE YGSVIFIAGN MPMISEITPL IIIGKLEQYD FAGATAVALV MLVISFLLLL VINGLQAWQR KRAGA
|
| |