Gene Vapar_2960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2960 
Symbol 
ID7972236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3120144 
End bp3121031 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content66% 
IMG OID644793545 
Productsulfate ABC transporter, inner membrane subunit CysT 
Protein accessionYP_002944846 
Protein GI239815936 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0555] ABC-type sulfate transport system, permease component 
TIGRFAM ID[TIGR00969] sulfate ABC transporter, permease protein
[TIGR02139] sulfate ABC transporter, permease protein CysT 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGGCG CTGTTTCTTC GGCGCTCCCG TCCGCGGGAG CGCCTTTTTC GCGTGCCAAC 
CGGGCAGGGG GCGCCAAGCG CGTGCTGCCC GGTTTCCACA TCACGCTCGG CTTCTCCATT
CTTTACCTGA GCCTGATCGT GCTGATCCCG CTCTCGGCGC TGGTCTTCAA GACCTTCACG
CTGAGCTGGG AGCAGTTCTG GGTGGCCGTG ACCGCGCCGC GCGTGATGGC CTCGTACCGG
CTGACCTTCG GCGCCTCGCT GATCGCGGCC GTGGTCAACG CGGTGTTCGG CCTGCTCGTG
GCCTGGGTGC TGGTGCGCTA CAAGTTCCCG GGCAAGCGCA TCGTCGATGC GCTGGTCGAC
CTGCCGTTCG CGCTGCCCAC GGCGGTGGCC GGCATCTCGC TCACGGCGCT GCTCGCGGGC
AACGGCTGGA TCGGGCAGCT GCTCGAGCCG CACGGCATCA AGCTCGCGTT CACGCCGGCG
GGCATCGTGA TTGCGCTGAT CTTCATCGGC CTGCCGTTCG TGGTGCGCAC GGTGCAGCCG
GTGCTCGAAG ACGCCGAGAA GGAGCTCGAG GAAGCCGCCA CGTCGCTCGG TGCGACGCGG
CTGCAGACCT TCACCAAGGT AATCTTCCCG TCGATCGCGC CGGCGCTGCT CACGGGCTTT
GCGATGGCCT TCGCACGCGC CATCGGCGAG TACGGATCGG TGATCTTCAT TGCCGGCAAC
ATGCCGATGA TCTCGGAGAT CACGCCGCTC ATCATCATCG GCAAGCTGGA GCAGTACGAC
TTTGCCGGCG CCACCGCGGT CGCGCTCGTG ATGCTGGTCA TTTCATTCCT CTTGCTGCTG
GTCATCAACG GCTTGCAGGC CTGGCAGCGC AAGCGCGCGG GAGCTTGA
 
Protein sequence
MSGAVSSALP SAGAPFSRAN RAGGAKRVLP GFHITLGFSI LYLSLIVLIP LSALVFKTFT 
LSWEQFWVAV TAPRVMASYR LTFGASLIAA VVNAVFGLLV AWVLVRYKFP GKRIVDALVD
LPFALPTAVA GISLTALLAG NGWIGQLLEP HGIKLAFTPA GIVIALIFIG LPFVVRTVQP
VLEDAEKELE EAATSLGATR LQTFTKVIFP SIAPALLTGF AMAFARAIGE YGSVIFIAGN
MPMISEITPL IIIGKLEQYD FAGATAVALV MLVISFLLLL VINGLQAWQR KRAGA