More than 300 homologs were found in PanDaTox collection
for query gene Pmen_4185 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_4185  response regulator receiver protein  100 
 
 
159 aa  312  9.999999999999999e-85  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2128  response regulator  77.37 
 
 
154 aa  215  2e-55  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1938  response regulator receiver  78.52 
 
 
154 aa  214  2.9999999999999998e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0328542  normal  0.732853 
 
 
-
 
NC_010717  PXO_04606  two-component system regulatory protein  54.35 
 
 
157 aa  149  1e-35  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_2099  response regulator receiver modulated diguanylate phosphodiesterase  58.78 
 
 
402 aa  143  1e-33  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.316821 
 
 
-
 
NC_011988  Avi_5382  two-component system regulatory protein  55 
 
 
158 aa  139  1.9999999999999998e-32  Agrobacterium vitis S4  Bacteria  normal  0.365131  n/a   
 
 
-
 
NC_007614  Nmul_A1861  putative PAS/PAC sensor protein  48.44 
 
 
280 aa  125  2.0000000000000002e-28  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.372386  n/a   
 
 
-
 
NC_007948  Bpro_2389  response regulator receiver domain-containing protein  48.82 
 
 
159 aa  125  3e-28  Polaromonas sp. JS666  Bacteria  normal  0.589748  normal 
 
 
-
 
NC_007614  Nmul_A1860  diguanylate cyclase  48.53 
 
 
312 aa  123  8.000000000000001e-28  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2092  adenylate/guanylate cyclase  50 
 
 
395 aa  117  7.999999999999999e-26  Burkholderia sp. 383  Bacteria  normal  0.498255  normal  0.305178 
 
 
-
 
NC_007908  Rfer_3546  putative PAS/PAC sensor protein  47.29 
 
 
282 aa  117  9e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.536601  n/a   
 
 
-
 
NC_010681  Bphyt_0187  response regulator receiver modulated metal dependent phosphohydrolase  49.62 
 
 
354 aa  116  9.999999999999999e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0125166 
 
 
-
 
NC_007908  Rfer_3547  diguanylate cyclase  48.44 
 
 
314 aa  113  1.0000000000000001e-24  Rhodoferax ferrireducens T118  Bacteria  normal  0.928319  n/a   
 
 
-
 
NC_007954  Sden_1917  response regulator receiver  42.95 
 
 
303 aa  113  1.0000000000000001e-24  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2733  response regulator receiver modulated metal dependent phosphohydrolase  42.97 
 
 
346 aa  113  1.0000000000000001e-24  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6414  adenylate cyclase  45 
 
 
395 aa  112  2.0000000000000002e-24  Ralstonia eutropha JMP134  Bacteria  normal  0.0293466  n/a   
 
 
-
 
NC_013422  Hneap_2065  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  45.86 
 
 
615 aa  109  2.0000000000000002e-23  Halothiobacillus neapolitanus c2  Bacteria  normal  0.722895  n/a   
 
 
-
 
NC_013216  Dtox_4196  response regulator receiver modulated metal dependent phosphohydrolase  45.31 
 
 
350 aa  105  3e-22  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3285  response regulator receiver  47.76 
 
 
362 aa  103  1e-21  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_0825  response regulator receiver  35 
 
 
204 aa  96.7  1e-19  Methanococcoides burtonii DSM 6242  Archaea  normal  0.751719  n/a   
 
 
-
 
NC_013889  TK90_0533  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  40.16 
 
 
597 aa  96.7  1e-19  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.985347  normal 
 
 
-
 
NC_008345  Sfri_1020  two component, sigma54 specific, transcriptional regulator, Fis family protein  45.11 
 
 
516 aa  94  8e-19  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  39.55 
 
 
376 aa  92.4  2e-18  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_008347  Mmar10_1277  response regulator receiver modulated diguanylate cyclase  37.98 
 
 
454 aa  89.7  1e-17  Maricaulis maris MCS10  Bacteria  normal  0.410696  normal  0.0388481 
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  38.17 
 
 
377 aa  89  3e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2326  response regulator receiver modulated diguanylate cyclase  36.92 
 
 
536 aa  88.2  4e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_4702  response regulator receiver Signal transduction histidine kinase  37.41 
 
 
381 aa  87.8  6e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0901362  normal 
 
 
-
 
NC_007614  Nmul_A1138  response regulator receiver /GGDEF/PAS/PAC domain-containing protein  36.88 
 
 
756 aa  87.8  6e-17  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0305477  n/a   
 
 
-
 
NC_009092  Shew_0981  response regulator receiver protein  39.32 
 
 
155 aa  87.8  6e-17  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007354  Ecaj_0304  response regulator PleD  31.58 
 
 
458 aa  87  1e-16  Ehrlichia canis str. Jake  Bacteria  normal  0.0864091  n/a   
 
 
-
 
NC_013757  Gobs_4657  two component transcriptional regulator, winged helix family  40 
 
 
240 aa  86.7  1e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2267  two component transcriptional regulator, AraC family  38.71 
 
 
265 aa  85.5  2e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00808217 
 
 
-
 
NC_007925  RPC_3308  response regulator PleD  37.98 
 
 
457 aa  85.9  2e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.268667  normal 
 
 
-
 
NC_011729  PCC7424_0500  response regulator receiver sensor signal transduction histidine kinase  40.56 
 
 
373 aa  86.3  2e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_1392  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.22 
 
 
584 aa  85.5  3e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.623748  normal 
 
 
-
 
NC_011369  Rleg2_1290  response regulator PleD  40 
 
 
457 aa  85.1  3e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0138689  hitchhiker  0.00259394 
 
 
-
 
NC_011883  Ddes_0853  two component, sigma54 specific, transcriptional regulator, Fis family  35.29 
 
 
459 aa  85.5  3e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0538681  n/a   
 
 
-
 
NC_012850  Rleg_1382  response regulator PleD  38.76 
 
 
457 aa  84.7  4e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.390598 
 
 
-
 
NC_007799  ECH_0773  response regulator PleD  30.92 
 
 
458 aa  84.3  5e-16  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2442  response regulator PleD  35.66 
 
 
457 aa  84.3  6e-16  Nitrobacter hamburgensis X14  Bacteria  normal  0.696702  n/a   
 
 
-
 
NC_011989  Avi_1750  response regulator PleD  37.98 
 
 
457 aa  84  7e-16  Agrobacterium vitis S4  Bacteria  normal  0.263569  n/a   
 
 
-
 
NC_010524  Lcho_3544  response regulator receiver modulated diguanylate cyclase  42.99 
 
 
322 aa  84  7e-16  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0106122 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  37.84 
 
 
566 aa  84  7e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  39.13 
 
 
372 aa  84  8e-16  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  37.8 
 
 
541 aa  84  8e-16  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  32.81 
 
 
451 aa  84  8e-16  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_008700  Sama_1718  response regulator receiver protein  40 
 
 
224 aa  84  9e-16  Shewanella amazonensis SB2B  Bacteria  normal  0.0955826  normal  0.0525727 
 
 
-
 
NC_009943  Dole_1136  response regulator receiver modulated metal dependent phosphohydrolase  34.67 
 
 
348 aa  83.2  0.000000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2200  two component, sigma54 specific, transcriptional regulator, Fis family  32.65 
 
 
459 aa  83.2  0.000000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007406  Nwi_1432  response regulator PleD  37.21 
 
 
457 aa  83.6  0.000000000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_1723  response regulator receiver (CheY-like) modulated serine phosphatase  38.85 
 
 
381 aa  83.6  0.000000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00833768  n/a   
 
 
-
 
NC_011662  Tmz1t_1846  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  38.76 
 
 
588 aa  83.2  0.000000000000001  Thauera sp. MZ1T  Bacteria  normal  0.157265  n/a   
 
 
-
 
NC_007955  Mbur_2108  multisensor signal transduction histidine kinase  36.3 
 
 
492 aa  83.6  0.000000000000001  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_013525  Tter_1016  two component transcriptional regulator, winged helix family  37.8 
 
 
243 aa  82.8  0.000000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013173  Dbac_2984  two component, sigma54 specific, transcriptional regulator, Fis family  33.11 
 
 
458 aa  82.8  0.000000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.826768  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  34.9 
 
 
457 aa  82.4  0.000000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  35.66 
 
 
443 aa  82.4  0.000000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  37.14 
 
 
541 aa  82.8  0.000000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  36.42 
 
 
458 aa  82.8  0.000000000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1924  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  35.11 
 
 
367 aa  82.8  0.000000000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.620973  n/a   
 
 
-
 
NC_009665  Shew185_4204  response regulator receiver modulated diguanylate cyclase  35.9 
 
 
310 aa  82.4  0.000000000000002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0878  response regulator receiver  34.96 
 
 
302 aa  82.8  0.000000000000002  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_007958  RPD_3038  response regulator PleD  36.43 
 
 
457 aa  82.8  0.000000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.372566  normal  0.319547 
 
 
-
 
NC_011663  Sbal223_4132  response regulator receiver modulated diguanylate cyclase  35.9 
 
 
310 aa  82.4  0.000000000000002  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1777  metal dependent phosphohydrolase, HD region with response regulator receiver modulation  36.36 
 
 
414 aa  81.6  0.000000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2413  response regulator PleD  36.43 
 
 
457 aa  82.4  0.000000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.592932  normal  0.173821 
 
 
-
 
NC_011884  Cyan7425_1391  response regulator receiver sensor signal transduction histidine kinase  35.11 
 
 
373 aa  82  0.000000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.540189  normal 
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  41.23 
 
 
231 aa  81.6  0.000000000000004  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0931  response regulator receiver modulated diguanylate cyclase  37.98 
 
 
457 aa  81.6  0.000000000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.436852  normal  0.104843 
 
 
-
 
NC_011004  Rpal_3541  response regulator PleD  35.66 
 
 
457 aa  81.6  0.000000000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0967  diguanylate cyclase  37.98 
 
 
457 aa  81.6  0.000000000000004  Methylobacterium extorquens PA1  Bacteria  normal  0.555277  normal  0.0207283 
 
 
-
 
NC_009997  Sbal195_4336  response regulator receiver modulated diguanylate cyclase  35.04 
 
 
310 aa  81.6  0.000000000000004  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2947  multi-sensor signal transduction histidine kinase  36.43 
 
 
503 aa  81.3  0.000000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  37.82 
 
 
231 aa  81.3  0.000000000000005  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  33.11 
 
 
457 aa  81.3  0.000000000000005  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  35.17 
 
 
239 aa  81.3  0.000000000000005  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_010338  Caul_1497  response regulator PleD  36.92 
 
 
454 aa  81.3  0.000000000000005  Caulobacter sp. K31  Bacteria  normal  normal  0.122959 
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  35.17 
 
 
239 aa  81.3  0.000000000000005  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_011886  Achl_2443  two component transcriptional regulator, winged helix family  41.74 
 
 
224 aa  81.3  0.000000000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00121019 
 
 
-
 
NC_013161  Cyan8802_1502  response regulator receiver modulated GAF sensor protein  37.23 
 
 
311 aa  80.9  0.000000000000006  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1475  response regulator receiver modulated GAF sensor protein  37.23 
 
 
311 aa  80.9  0.000000000000006  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009719  Plav_2815  response regulator receiver modulated diguanylate cyclase  32.86 
 
 
457 aa  80.9  0.000000000000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.631579  normal  0.0857187 
 
 
-
 
NC_011666  Msil_1887  adenylate/guanylate cyclase  36.72 
 
 
403 aa  80.9  0.000000000000007  Methylocella silvestris BL2  Bacteria  n/a    normal  0.522729 
 
 
-
 
NC_008148  Rxyl_0783  two component transcriptional regulator  39.5 
 
 
231 aa  80.9  0.000000000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0168  two component, sigma54 specific, Fis family transcriptional regulator  32.68 
 
 
459 aa  80.9  0.000000000000007  Desulfovibrio vulgaris DP4  Bacteria  normal  0.564625  normal  0.730975 
 
 
-
 
NC_007948  Bpro_2008  two component transcriptional regulator  40.74 
 
 
251 aa  80.5  0.000000000000008  Polaromonas sp. JS666  Bacteria  normal  0.857325  normal 
 
 
-
 
NC_011729  PCC7424_5086  response regulator receiver modulated diguanylate cyclase  34.38 
 
 
465 aa  80.5  0.000000000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  37.9 
 
 
237 aa  80.5  0.000000000000009  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  35.14 
 
 
339 aa  80.5  0.000000000000009  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0424  response regulator receiver modulated diguanylate cyclase  34.44 
 
 
469 aa  80.5  0.00000000000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.97349 
 
 
-
 
NC_010002  Daci_0123  two component transcriptional regulator  36.55 
 
 
241 aa  79.7  0.00000000000001  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0045  adenylate/guanylate cyclase  41.1 
 
 
382 aa  80.1  0.00000000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_3616  response regulator receiver Signal transduction histidine kinase  41.13 
 
 
393 aa  80.1  0.00000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159723  normal  0.789101 
 
 
-
 
NC_009636  Smed_0926  response regulator PleD  37.21 
 
 
455 aa  80.1  0.00000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.773886 
 
 
-
 
NC_011138  MADE_01717  putative response regulator  34.04 
 
 
568 aa  79.7  0.00000000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  36.22 
 
 
383 aa  79.7  0.00000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007335  PMN2A_1196  two component transcriptional regulator  41.53 
 
 
246 aa  79  0.00000000000002  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0136  two component transcriptional regulator  36.03 
 
 
248 aa  79.3  0.00000000000002  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_1712  two component transcriptional regulator  40.34 
 
 
248 aa  79.3  0.00000000000002  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  36.22 
 
 
383 aa  79.3  0.00000000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
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