More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_2128 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_2128  response regulator  100 
 
 
154 aa  303  7e-82  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1938  response regulator receiver  95.42 
 
 
154 aa  286  9e-77  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0328542  normal  0.732853 
 
 
-
 
NC_009439  Pmen_4185  response regulator receiver protein  77.37 
 
 
159 aa  215  2e-55  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_04606  two-component system regulatory protein  51.85 
 
 
157 aa  145  2.0000000000000003e-34  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_2099  response regulator receiver modulated diguanylate phosphodiesterase  52.67 
 
 
402 aa  133  8e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.316821 
 
 
-
 
NC_011988  Avi_5382  two-component system regulatory protein  50.75 
 
 
158 aa  122  2e-27  Agrobacterium vitis S4  Bacteria  normal  0.365131  n/a   
 
 
-
 
NC_007614  Nmul_A1860  diguanylate cyclase  45.19 
 
 
312 aa  119  9.999999999999999e-27  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2389  response regulator receiver domain-containing protein  48.82 
 
 
159 aa  118  3e-26  Polaromonas sp. JS666  Bacteria  normal  0.589748  normal 
 
 
-
 
NC_007954  Sden_1917  response regulator receiver  49.22 
 
 
303 aa  117  3.9999999999999996e-26  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1861  putative PAS/PAC sensor protein  46.88 
 
 
280 aa  116  9.999999999999999e-26  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.372386  n/a   
 
 
-
 
NC_007908  Rfer_3546  putative PAS/PAC sensor protein  46.51 
 
 
282 aa  114  6.9999999999999995e-25  Rhodoferax ferrireducens T118  Bacteria  normal  0.536601  n/a   
 
 
-
 
NC_007908  Rfer_3547  diguanylate cyclase  48.44 
 
 
314 aa  110  5e-24  Rhodoferax ferrireducens T118  Bacteria  normal  0.928319  n/a   
 
 
-
 
NC_007511  Bcep18194_B2092  adenylate/guanylate cyclase  45.45 
 
 
395 aa  110  7.000000000000001e-24  Burkholderia sp. 383  Bacteria  normal  0.498255  normal  0.305178 
 
 
-
 
NC_007336  Reut_C6414  adenylate cyclase  43.65 
 
 
395 aa  107  7.000000000000001e-23  Ralstonia eutropha JMP134  Bacteria  normal  0.0293466  n/a   
 
 
-
 
NC_013946  Mrub_2733  response regulator receiver modulated metal dependent phosphohydrolase  39.06 
 
 
346 aa  104  5e-22  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0533  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  42.64 
 
 
597 aa  103  6e-22  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.985347  normal 
 
 
-
 
NC_013216  Dtox_4196  response regulator receiver modulated metal dependent phosphohydrolase  45.74 
 
 
350 aa  103  8e-22  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1020  two component, sigma54 specific, transcriptional regulator, Fis family protein  48.46 
 
 
516 aa  102  2e-21  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2065  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.67 
 
 
615 aa  99.8  1e-20  Halothiobacillus neapolitanus c2  Bacteria  normal  0.722895  n/a   
 
 
-
 
NC_010681  Bphyt_0187  response regulator receiver modulated metal dependent phosphohydrolase  40.77 
 
 
354 aa  98.2  4e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0125166 
 
 
-
 
NC_007298  Daro_3285  response regulator receiver  45.24 
 
 
362 aa  94  7e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1138  response regulator receiver /GGDEF/PAS/PAC domain-containing protein  36.62 
 
 
756 aa  89.4  2e-17  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0305477  n/a   
 
 
-
 
NC_007955  Mbur_0825  response regulator receiver  32.31 
 
 
204 aa  87.8  5e-17  Methanococcoides burtonii DSM 6242  Archaea  normal  0.751719  n/a   
 
 
-
 
NC_011729  PCC7424_2267  two component transcriptional regulator, AraC family  35.48 
 
 
265 aa  84.3  5e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00808217 
 
 
-
 
NC_007413  Ava_4702  response regulator receiver Signal transduction histidine kinase  35.62 
 
 
381 aa  84  7e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0901362  normal 
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  38.79 
 
 
448 aa  81.6  0.000000000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  37.19 
 
 
376 aa  81.6  0.000000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  37.93 
 
 
448 aa  81.6  0.000000000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1392  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  37.01 
 
 
584 aa  82  0.000000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.623748  normal 
 
 
-
 
NC_007955  Mbur_0878  response regulator receiver  35.43 
 
 
302 aa  81.3  0.000000000000004  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_008312  Tery_0662  adenylate/guanylate cyclase  30.46 
 
 
1130 aa  81.3  0.000000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_0661  adenylate/guanylate cyclase  30.46 
 
 
1133 aa  80.5  0.000000000000007  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_5086  response regulator receiver modulated diguanylate cyclase  34.48 
 
 
465 aa  80.5  0.000000000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011726  PCC8801_1475  response regulator receiver modulated GAF sensor protein  34.68 
 
 
311 aa  80.1  0.00000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  34.06 
 
 
443 aa  79.7  0.00000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_013161  Cyan8802_1502  response regulator receiver modulated GAF sensor protein  34.68 
 
 
311 aa  80.1  0.00000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_2108  multisensor signal transduction histidine kinase  36.3 
 
 
492 aa  80.1  0.00000000000001  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_011898  Ccel_1658  two component transcriptional regulator, winged helix family  39.47 
 
 
230 aa  78.6  0.00000000000003  Clostridium cellulolyticum H10  Bacteria  normal  0.515101  n/a   
 
 
-
 
NC_010814  Glov_1744  response regulator receiver sensor signal transduction histidine kinase  36.99 
 
 
376 aa  78.6  0.00000000000003  Geobacter lovleyi SZ  Bacteria  unclonable  0.00000105238  n/a   
 
 
-
 
NC_007354  Ecaj_0304  response regulator PleD  33.85 
 
 
458 aa  78.2  0.00000000000004  Ehrlichia canis str. Jake  Bacteria  normal  0.0864091  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  40.52 
 
 
454 aa  78.2  0.00000000000004  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0931  response regulator receiver modulated diguanylate cyclase  37.69 
 
 
457 aa  78.2  0.00000000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.436852  normal  0.104843 
 
 
-
 
NC_009092  Shew_0981  response regulator receiver protein  37.29 
 
 
155 aa  78.2  0.00000000000004  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0967  diguanylate cyclase  37.69 
 
 
457 aa  78.2  0.00000000000004  Methylobacterium extorquens PA1  Bacteria  normal  0.555277  normal  0.0207283 
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  31.75 
 
 
452 aa  78.2  0.00000000000004  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_011989  Avi_1750  response regulator PleD  35.66 
 
 
457 aa  77.8  0.00000000000005  Agrobacterium vitis S4  Bacteria  normal  0.263569  n/a   
 
 
-
 
NC_008347  Mmar10_1277  response regulator receiver modulated diguanylate cyclase  34.11 
 
 
454 aa  77  0.00000000000009  Maricaulis maris MCS10  Bacteria  normal  0.410696  normal  0.0388481 
 
 
-
 
NC_010718  Nther_0916  two component transcriptional regulator, winged helix family  33.33 
 
 
234 aa  76.6  0.0000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0276045  hitchhiker  9.727110000000001e-18 
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  37.82 
 
 
310 aa  76.6  0.0000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_005957  BT9727_0923  two-component response regulator; MrsR2 protein  30.43 
 
 
240 aa  76.3  0.0000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.227452  n/a   
 
 
-
 
NC_006274  BCZK0906  response regulator  30.43 
 
 
240 aa  76.3  0.0000000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  32.31 
 
 
322 aa  76.3  0.0000000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  32.82 
 
 
231 aa  76.3  0.0000000000001  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1846  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.26 
 
 
588 aa  76.6  0.0000000000001  Thauera sp. MZ1T  Bacteria  normal  0.157265  n/a   
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  32.31 
 
 
322 aa  75.9  0.0000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2902  response regulator receiver  35.43 
 
 
350 aa  76.3  0.0000000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.1984  normal  0.246098 
 
 
-
 
NC_013223  Dret_0077  two component, sigma54 specific, transcriptional regulator, Fis family  35.65 
 
 
457 aa  75.9  0.0000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2903  two component transcriptional regulator, winged helix family  37.19 
 
 
234 aa  75.5  0.0000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0410  anti-sigma-factor antagonist  36.17 
 
 
238 aa  75.5  0.0000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.694521 
 
 
-
 
NC_007799  ECH_0773  response regulator PleD  33.08 
 
 
458 aa  75.9  0.0000000000002  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1986  two component transcriptional regulator  30.4 
 
 
240 aa  75.5  0.0000000000003  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1522  two component, sigma54 specific, transcriptional regulator, Fis family  32 
 
 
461 aa  75.5  0.0000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1924  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  34.78 
 
 
367 aa  75.1  0.0000000000003  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.620973  n/a   
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  33.61 
 
 
231 aa  75.1  0.0000000000003  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_011883  Ddes_0853  two component, sigma54 specific, transcriptional regulator, Fis family  33.82 
 
 
459 aa  75.1  0.0000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0538681  n/a   
 
 
-
 
NC_012850  Rleg_3169  response regulator receiver modulated metal dependent phosphohydrolase  35.71 
 
 
353 aa  74.7  0.0000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.821118  normal 
 
 
-
 
NC_007955  Mbur_1899  multisensor signal transduction histidine kinase  32.8 
 
 
462 aa  74.7  0.0000000000004  Methanococcoides burtonii DSM 6242  Archaea  normal  0.970297  n/a   
 
 
-
 
NC_011729  PCC7424_0500  response regulator receiver sensor signal transduction histidine kinase  38.02 
 
 
373 aa  74.7  0.0000000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_1390  multi-sensor hybrid histidine kinase  34.75 
 
 
1977 aa  74.7  0.0000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7417  response regulator receiver modulated diguanylate cyclase  36.43 
 
 
457 aa  74.7  0.0000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.196799  n/a   
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  34.65 
 
 
377 aa  74.3  0.0000000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3308  response regulator PleD  33.33 
 
 
457 aa  74.3  0.0000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.268667  normal 
 
 
-
 
NC_007413  Ava_1777  metal dependent phosphohydrolase, HD region with response regulator receiver modulation  32.81 
 
 
414 aa  73.9  0.0000000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  32.81 
 
 
451 aa  73.9  0.0000000000007  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_012918  GM21_2694  two component, sigma54 specific, transcriptional regulator, Fis family  31.2 
 
 
461 aa  73.9  0.0000000000007  Geobacter sp. M21  Bacteria  n/a    hitchhiker  7.62039e-17 
 
 
-
 
NC_008148  Rxyl_0783  two component transcriptional regulator  37.82 
 
 
231 aa  73.9  0.0000000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  36.92 
 
 
705 aa  73.9  0.0000000000008  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3541  response regulator PleD  32.56 
 
 
457 aa  73.9  0.0000000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3328  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.33 
 
 
711 aa  73.6  0.0000000000009  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2915  two component transcriptional regulator, winged helix family  32.41 
 
 
225 aa  72.8  0.000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.892207  normal  0.300351 
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  29.05 
 
 
456 aa  72.8  0.000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_009507  Swit_5319  cell cycle transcriptional regulator CtrA  35.34 
 
 
233 aa  73.2  0.000000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.0983847 
 
 
-
 
NC_009943  Dole_1090  response regulator receiver protein  34.33 
 
 
846 aa  73.2  0.000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.874134  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  31.25 
 
 
317 aa  72.8  0.000000000001  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0907  response regulator receiver modulated diguanylate cyclase  35.38 
 
 
457 aa  72.8  0.000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.401363  normal  0.40647 
 
 
-
 
NC_002939  GSU0963  sigma-54 dependent DNA-binding response regulator  34.17 
 
 
467 aa  72.4  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6679  response regulator receiver modulated diguanylate cyclase  35.38 
 
 
457 aa  72.4  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2984  two component, sigma54 specific, transcriptional regulator, Fis family  32.64 
 
 
458 aa  72.4  0.000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.826768  n/a   
 
 
-
 
NC_011138  MADE_01717  putative response regulator  31.54 
 
 
568 aa  72.4  0.000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0766  two component transcriptional regulator  31.93 
 
 
231 aa  72.4  0.000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  0.585906  n/a   
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  33.08 
 
 
252 aa  72.4  0.000000000002  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  31.11 
 
 
351 aa  72.8  0.000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010333  Caul_5315  response regulator receiver protein  36.89 
 
 
144 aa  72.4  0.000000000002  Caulobacter sp. K31  Bacteria  normal  0.813269  normal  0.296683 
 
 
-
 
NC_007964  Nham_2442  response regulator PleD  31.78 
 
 
457 aa  72.4  0.000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.696702  n/a   
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  35.11 
 
 
480 aa  72.8  0.000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.129673 
 
 
-
 
NC_008531  LEUM_1950  DNA-binding response regulator  31.15 
 
 
235 aa  72.8  0.000000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.100456  n/a   
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  30.16 
 
 
227 aa  72.4  0.000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2633  two component, sigma54 specific, transcriptional regulator, Fis family  32.35 
 
 
467 aa  72  0.000000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2413  response regulator PleD  32.56 
 
 
457 aa  72  0.000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.592932  normal  0.173821 
 
 
-
 
NC_009483  Gura_2932  response regulator receiver sensor signal transduction histidine kinase  31.82 
 
 
394 aa  72  0.000000000003  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000651793  n/a   
 
 
-
 
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