More than 300 homologs were found in PanDaTox collection
for query gene Rfer_3546 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_3546  putative PAS/PAC sensor protein  100 
 
 
282 aa  580  1e-164  Rhodoferax ferrireducens T118  Bacteria  normal  0.536601  n/a   
 
 
-
 
NC_007614  Nmul_A1861  putative PAS/PAC sensor protein  71.43 
 
 
280 aa  416  9.999999999999999e-116  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.372386  n/a   
 
 
-
 
NC_007954  Sden_1917  response regulator receiver  56.95 
 
 
303 aa  336  1.9999999999999998e-91  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3547  diguanylate cyclase  75.34 
 
 
314 aa  228  6e-59  Rhodoferax ferrireducens T118  Bacteria  normal  0.928319  n/a   
 
 
-
 
NC_007948  Bpro_2389  response regulator receiver domain-containing protein  66.67 
 
 
159 aa  219  5e-56  Polaromonas sp. JS666  Bacteria  normal  0.589748  normal 
 
 
-
 
NC_007336  Reut_C6414  adenylate cyclase  60.92 
 
 
395 aa  211  1e-53  Ralstonia eutropha JMP134  Bacteria  normal  0.0293466  n/a   
 
 
-
 
NC_008345  Sfri_1020  two component, sigma54 specific, transcriptional regulator, Fis family protein  66.45 
 
 
516 aa  204  1e-51  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1860  diguanylate cyclase  67.13 
 
 
312 aa  204  2e-51  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2092  adenylate/guanylate cyclase  48.21 
 
 
395 aa  199  3.9999999999999996e-50  Burkholderia sp. 383  Bacteria  normal  0.498255  normal  0.305178 
 
 
-
 
NC_007614  Nmul_A1138  response regulator receiver /GGDEF/PAS/PAC domain-containing protein  48.98 
 
 
756 aa  183  3e-45  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0305477  n/a   
 
 
-
 
NC_010681  Bphyt_0187  response regulator receiver modulated metal dependent phosphohydrolase  45.06 
 
 
354 aa  130  3e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0125166 
 
 
-
 
NC_013216  Dtox_4196  response regulator receiver modulated metal dependent phosphohydrolase  41.67 
 
 
350 aa  125  5e-28  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_04606  two-component system regulatory protein  45.99 
 
 
157 aa  117  3e-25  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4185  response regulator receiver protein  47.29 
 
 
159 aa  117  3e-25  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_2065  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  42.76 
 
 
615 aa  116  3.9999999999999997e-25  Halothiobacillus neapolitanus c2  Bacteria  normal  0.722895  n/a   
 
 
-
 
NC_007298  Daro_3285  response regulator receiver  42.07 
 
 
362 aa  116  5e-25  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1938  response regulator receiver  46.51 
 
 
154 aa  114  2.0000000000000002e-24  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0328542  normal  0.732853 
 
 
-
 
NC_004578  PSPTO_2128  response regulator  46.51 
 
 
154 aa  114  3e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_2099  response regulator receiver modulated diguanylate phosphodiesterase  42.47 
 
 
402 aa  113  3e-24  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.316821 
 
 
-
 
NC_007908  Rfer_2262  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  30.83 
 
 
853 aa  105  6e-22  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2733  response regulator receiver modulated metal dependent phosphohydrolase  41.33 
 
 
346 aa  105  8e-22  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0533  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  38.16 
 
 
597 aa  103  2e-21  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.985347  normal 
 
 
-
 
NC_011988  Avi_5382  two-component system regulatory protein  45.07 
 
 
158 aa  103  4e-21  Agrobacterium vitis S4  Bacteria  normal  0.365131  n/a   
 
 
-
 
NC_008786  Veis_1344  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  41.51 
 
 
836 aa  101  1e-20  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.492796  normal  0.0418259 
 
 
-
 
NC_011662  Tmz1t_1846  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  43.48 
 
 
588 aa  100  2e-20  Thauera sp. MZ1T  Bacteria  normal  0.157265  n/a   
 
 
-
 
NC_011989  Avi_1750  response regulator PleD  30.73 
 
 
457 aa  97.4  2e-19  Agrobacterium vitis S4  Bacteria  normal  0.263569  n/a   
 
 
-
 
NC_012850  Rleg_1382  response regulator PleD  38.93 
 
 
457 aa  97.4  2e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.390598 
 
 
-
 
NC_010524  Lcho_3702  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  27.24 
 
 
863 aa  97.4  2e-19  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.170309 
 
 
-
 
NC_011369  Rleg2_1290  response regulator PleD  38.93 
 
 
457 aa  97.1  3e-19  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0138689  hitchhiker  0.00259394 
 
 
-
 
NC_007908  Rfer_2893  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  43.7 
 
 
1114 aa  96.7  4e-19  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1153  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  40.14 
 
 
850 aa  95.1  1e-18  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2370  response regulator receiver modulated metal dependent phosphohydrolase  37.36 
 
 
370 aa  94  3e-18  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0926  response regulator PleD  31.94 
 
 
455 aa  93.2  5e-18  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.773886 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  37.41 
 
 
440 aa  92.8  5e-18  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  39.46 
 
 
227 aa  92  1e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1278  sensory box protein/response regulator  35.98 
 
 
705 aa  91.3  2e-17  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.517683  n/a   
 
 
-
 
NC_013173  Dbac_2017  response regulator receiver modulated metal dependent phosphohydrolase  35.14 
 
 
379 aa  91.3  2e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.98115  n/a   
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  39.1 
 
 
488 aa  90.9  2e-17  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_013161  Cyan8802_2076  response regulator receiver modulated diguanylate cyclase  27.46 
 
 
481 aa  90.1  3e-17  Cyanothece sp. PCC 8802  Bacteria  hitchhiker  0.00773841  normal 
 
 
-
 
NC_011726  PCC8801_2052  response regulator receiver modulated diguanylate cyclase  27.46 
 
 
481 aa  90.5  3e-17  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  34.57 
 
 
705 aa  90.1  4e-17  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1864  response regulator receiver modulated diguanylate cyclase  38.69 
 
 
457 aa  89.7  4e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.831894  normal  0.121309 
 
 
-
 
NC_010172  Mext_0967  diguanylate cyclase  36.57 
 
 
457 aa  90.1  4e-17  Methylobacterium extorquens PA1  Bacteria  normal  0.555277  normal  0.0207283 
 
 
-
 
NC_011757  Mchl_0931  response regulator receiver modulated diguanylate cyclase  36.57 
 
 
457 aa  90.1  4e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.436852  normal  0.104843 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  39.04 
 
 
452 aa  90.1  4e-17  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_010814  Glov_1546  response regulator receiver modulated metal dependent phosphohydrolase  37.67 
 
 
368 aa  90.1  4e-17  Geobacter lovleyi SZ  Bacteria  normal  0.61009  n/a   
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  36.94 
 
 
437 aa  89.4  6e-17  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.7 
 
 
593 aa  89  8e-17  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.7 
 
 
593 aa  89  8e-17  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_011894  Mnod_7417  response regulator receiver modulated diguanylate cyclase  37.23 
 
 
457 aa  89  8e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.196799  n/a   
 
 
-
 
NC_010511  M446_6679  response regulator receiver modulated diguanylate cyclase  37.78 
 
 
457 aa  89  8e-17  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_1277  response regulator receiver modulated diguanylate cyclase  38.17 
 
 
454 aa  88.6  9e-17  Maricaulis maris MCS10  Bacteria  normal  0.410696  normal  0.0388481 
 
 
-
 
NC_002939  GSU2574  response regulator  36.67 
 
 
368 aa  88.6  1e-16  Geobacter sulfurreducens PCA  Bacteria  normal  0.482084  n/a   
 
 
-
 
NC_007517  Gmet_2999  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  35.14 
 
 
361 aa  88.6  1e-16  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.669597 
 
 
-
 
NC_010725  Mpop_0907  response regulator receiver modulated diguanylate cyclase  37.78 
 
 
457 aa  88.6  1e-16  Methylobacterium populi BJ001  Bacteria  normal  0.401363  normal  0.40647 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  35.29 
 
 
437 aa  87.8  2e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4702  response regulator receiver Signal transduction histidine kinase  36.18 
 
 
381 aa  87.8  2e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0901362  normal 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  38.73 
 
 
566 aa  87.8  2e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_011666  Msil_0424  response regulator receiver modulated diguanylate cyclase  36.57 
 
 
469 aa  87.8  2e-16  Methylocella silvestris BL2  Bacteria  n/a    normal  0.97349 
 
 
-
 
NC_009943  Dole_1136  response regulator receiver modulated metal dependent phosphohydrolase  35.8 
 
 
348 aa  87  3e-16  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_1497  response regulator PleD  39.69 
 
 
454 aa  87  3e-16  Caulobacter sp. K31  Bacteria  normal  normal  0.122959 
 
 
-
 
NC_007413  Ava_0647  multi-sensor Signal transduction histidine kinase  39.02 
 
 
1741 aa  86.7  4e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.294056 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  37.84 
 
 
443 aa  86.7  4e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_007413  Ava_4783  PAS/PAC sensor hybrid histidine kinase  29.56 
 
 
680 aa  86.3  5e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.302794  normal 
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  34.07 
 
 
377 aa  86.3  5e-16  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0825  response regulator receiver  36.59 
 
 
204 aa  86.3  6e-16  Methanococcoides burtonii DSM 6242  Archaea  normal  0.751719  n/a   
 
 
-
 
NC_008789  Hhal_2157  response regulator receiver protein  35.9 
 
 
577 aa  85.9  7e-16  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1432  response regulator PleD  35.88 
 
 
457 aa  85.5  9e-16  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3677  response regulator PleD  36.15 
 
 
461 aa  85.5  9e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00345303  n/a   
 
 
-
 
NC_008254  Meso_1348  response regulator PleD  37.4 
 
 
457 aa  85.5  9e-16  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1213  response regulator receiver modulated diguanylate cyclase  33.81 
 
 
457 aa  84.7  0.000000000000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0512  response regulator receiver modulated metal dependent phosphohydrolase  35.44 
 
 
368 aa  84.3  0.000000000000002  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00189837  n/a   
 
 
-
 
NC_007298  Daro_2902  response regulator receiver  33.11 
 
 
350 aa  84.3  0.000000000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.1984  normal  0.246098 
 
 
-
 
NC_007404  Tbd_0085  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  29.12 
 
 
738 aa  84.3  0.000000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.127866 
 
 
-
 
NC_007517  Gmet_0010  PAS/PAC sensor hybrid histidine kinase  26.52 
 
 
508 aa  84.3  0.000000000000002  Geobacter metallireducens GS-15  Bacteria  normal  0.0502065  normal 
 
 
-
 
NC_007575  Suden_1924  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  35.92 
 
 
367 aa  84  0.000000000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.620973  n/a   
 
 
-
 
NC_011901  Tgr7_0081  two component transcriptional regulator, AraC family  35.67 
 
 
399 aa  84.7  0.000000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1373  response regulator receiver modulated metal dependent phosphohydrolase  33.77 
 
 
365 aa  83.6  0.000000000000003  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3308  response regulator PleD  36.64 
 
 
457 aa  84  0.000000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.268667  normal 
 
 
-
 
NC_011884  Cyan7425_1392  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.93 
 
 
584 aa  84  0.000000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.623748  normal 
 
 
-
 
NC_011004  Rpal_3541  response regulator PleD  35.88 
 
 
457 aa  83.6  0.000000000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2815  response regulator receiver modulated diguanylate cyclase  33.59 
 
 
457 aa  83.6  0.000000000000004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.631579  normal  0.0857187 
 
 
-
 
NC_010524  Lcho_0045  adenylate/guanylate cyclase  31.74 
 
 
382 aa  83.2  0.000000000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_1573  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, dimerization and phosphoacceptor region  34.72 
 
 
373 aa  83.2  0.000000000000005  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2413  response regulator PleD  36.09 
 
 
457 aa  82.8  0.000000000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.592932  normal  0.173821 
 
 
-
 
NC_008554  Sfum_0621  two component, sigma54 specific, Fis family transcriptional regulator  34.81 
 
 
472 aa  83.2  0.000000000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_5086  response regulator receiver modulated diguanylate cyclase  36.72 
 
 
465 aa  82.8  0.000000000000006  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007964  Nham_2442  response regulator PleD  35.11 
 
 
457 aa  82.8  0.000000000000006  Nitrobacter hamburgensis X14  Bacteria  normal  0.696702  n/a   
 
 
-
 
NC_007958  RPD_3038  response regulator PleD  35.88 
 
 
457 aa  82.4  0.000000000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.372566  normal  0.319547 
 
 
-
 
NC_007901  Rfer_4387  diguanylate cyclase/phosphodiesterase  31.79 
 
 
718 aa  81.6  0.00000000000001  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_004311  BRA0610  response regulator PleD  33.08 
 
 
461 aa  81.3  0.00000000000002  Brucella suis 1330  Bacteria  normal  0.961713  n/a   
 
 
-
 
NC_011884  Cyan7425_1391  response regulator receiver sensor signal transduction histidine kinase  32 
 
 
373 aa  80.9  0.00000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.540189  normal 
 
 
-
 
NC_008576  Mmc1_0435  response regulator receiver protein  38.02 
 
 
373 aa  80.9  0.00000000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.0149866  normal 
 
 
-
 
NC_009504  BOV_A0575  response regulator PleD  33.33 
 
 
456 aa  81.3  0.00000000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1887  adenylate/guanylate cyclase  33.79 
 
 
403 aa  81.3  0.00000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal  0.522729 
 
 
-
 
NC_008312  Tery_0662  adenylate/guanylate cyclase  32.24 
 
 
1130 aa  80.9  0.00000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  37.16 
 
 
480 aa  81.3  0.00000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.129673 
 
 
-
 
NC_011138  MADE_01717  putative response regulator  33.8 
 
 
568 aa  81.3  0.00000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0972  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.09 
 
 
994 aa  80.5  0.00000000000003  Dechloromonas aromatica RCB  Bacteria  normal  0.172335  normal 
 
 
-
 
NC_011883  Ddes_1054  response regulator receiver modulated metal dependent phosphohydrolase  34.34 
 
 
359 aa  80.1  0.00000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
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