| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1020 |
|---|
| Symbol | |
|---|
| ID | 4277135 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1197328 |
|---|
| End bp | 1198878 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638133788 |
|---|
| Product | two component, sigma54 specific, transcriptional regulator, Fis family protein |
|---|
| Protein accession | YP_749711 |
|---|
| Protein GI | 114562198 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATCA CTGCAAACGA TATTCTTAAC GCTAAGATTT TGATTGTCGA TGATCAAGAG
CCTAATGTGC TTCTGTTGGA GCAATTGCTA CTTGAAAGCG GTTATACCAT GGTAACTACA
ACCATGGATC CCCAGGTTGT TTGCGACCTG AACCGAATCA ATAACTATGA TCTGATCTTG
CTTGATCTAC AGATGCCAAA AATGGATGGA TTTGAAGTCA TGGCTGCGCT TAAGGCCGAC
CATAGCATGG ACTATTTACC AGTGCTGGTG CTCACAGCCC AACCCAATCA TAAACTGCAG
GCATTACAAG CGGGCGCCAA GGATTTTATT AGTAAACCCT TTGACTTGGT CGAAGTTAAA
ACGCGTATTC ATAATATGTT GGAAGTGCGT TTGTTATATA AAAAATTGGA AAAAAATAAC
ATCACTCTAG AAGACATTGT GCAAAAGCGT ACGGTAGAGT TGACTAAAAC TAACCTGCAA
CTTGGATTGG AAATTGAGGA ACGTAAAAAG GCTGAAGCGT CACTGAGAGA TACTTATACA
CAAATAAAGC AATTAAAGGA CAAGCTTCAG GCCGAAAACA CTTATCTTCA AAAGGAAGTT
GCACGGCAGT TTAATTTCGA CGAAATCATC GGCAGTAGTA AGCTGTTGTC GCAGGTTTTT
CAAAAAGTTG AGCAAGTTGC ACCAATGCAT GCAACCGTGT TACTGCTTGG TGAAACAGGC
ACCGGTAAAG GTGTTGTGGC CCGCGCCATC CACAGCCGGA GTTCACGAAA AAAACGCCCC
TTAATTACGG TGGATTGCAC CACCTTGCCA GTGGCGTTGA TAGAAAGCGA ATTGTTTGGC
CGAGAGCGTG GCGCTTTCAC TGGTTCTGAT AGCAAACAAA TCGGTCGTTT TGAGCTTGCT
GATGGCGGCA CCTTATTCCT AGATGAAATT GGTGAGATGC CGCTAGAAAT GCAAGCTAAA
CTGCTGAGGG TTATTCAAGA TGGTGAATTT GAACGTCTAG GAAGTCCCCG CACTATAAAG
GTCGATGTGA GAATTATTGC TGCGACTAAC CGTAACCTGA TAGAAGAAGT GCGTAATGGT
AAGTTCCGCG AAGATCTTTA TTACCGACTA AACGTATTCC CGATCACTTT GCCTCCTTTA
AGGCAACGTA AGGAAGATAT TTCATTATTG GTTAACCATT TTTTGATTAA ATTCAACAAA
AAAATAGGTA AGCAGATTGA CATAATCACT CAGGATGCTC TGAATACATT GCAGCAACAT
CAATGGCCTG GCAATGTGCG AGAGCTGGAG AGTGCCATTG AACGAGCCGT CATCCTCAGT
GAAGGGAAAT CACTGCAAAT ACTCGATCGA TTCGAAAGCT TTGATAAACT CGCTACTATC
GAGGAACCTT CGATGAAAGC TCTGGTTGAG TTAGAATATG AGCATATTGT CAAAGTCTTG
CAGCAGACTG GTTGGCGGAT AGAAGGTAAT AAAGGCGCTG CACTTATCCT CGGTCTCAAT
CCCAGTACTT TACGAGCGAG AATGCGCAAA CAGGGTATCA CTCGGCAGTA G
|
|---|
| Protein sequence | MEITANDILN AKILIVDDQE PNVLLLEQLL LESGYTMVTT TMDPQVVCDL NRINNYDLIL
LDLQMPKMDG FEVMAALKAD HSMDYLPVLV LTAQPNHKLQ ALQAGAKDFI SKPFDLVEVK
TRIHNMLEVR LLYKKLEKNN ITLEDIVQKR TVELTKTNLQ LGLEIEERKK AEASLRDTYT
QIKQLKDKLQ AENTYLQKEV ARQFNFDEII GSSKLLSQVF QKVEQVAPMH ATVLLLGETG
TGKGVVARAI HSRSSRKKRP LITVDCTTLP VALIESELFG RERGAFTGSD SKQIGRFELA
DGGTLFLDEI GEMPLEMQAK LLRVIQDGEF ERLGSPRTIK VDVRIIAATN RNLIEEVRNG
KFREDLYYRL NVFPITLPPL RQRKEDISLL VNHFLIKFNK KIGKQIDIIT QDALNTLQQH
QWPGNVRELE SAIERAVILS EGKSLQILDR FESFDKLATI EEPSMKALVE LEYEHIVKVL
QQTGWRIEGN KGAALILGLN PSTLRARMRK QGITRQ
|
|---|
| |