205 homologs were found in PanDaTox collection
for query gene PC1_2735 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013421  Pecwa_1538  ANTAR domain protein with unknown sensor  94.17 
 
 
429 aa  817    Pectobacterium wasabiae WPP163  Bacteria  normal  0.585588  n/a   
 
 
-
 
NC_012917  PC1_2735  ANTAR domain protein with unknown sensor  100 
 
 
429 aa  873    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0721448  n/a   
 
 
-
 
NC_012912  Dd1591_1437  ANTAR domain protein with unknown sensor  70.93 
 
 
429 aa  587  1e-166  Dickeya zeae Ech1591  Bacteria  normal  0.997771  n/a   
 
 
-
 
NC_012880  Dd703_2508  ANTAR domain protein with unknown sensor  70.66 
 
 
427 aa  578  1e-164  Dickeya dadantii Ech703  Bacteria  normal  0.102211  n/a   
 
 
-
 
NC_009832  Spro_2910  response regulator receiver/ANTAR domain-containing protein  52.79 
 
 
426 aa  394  1e-108  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0664  ANTAR domain protein with unknown sensor  43.16 
 
 
441 aa  306  4.0000000000000004e-82  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.293281  normal  0.015345 
 
 
-
 
NC_010002  Daci_2378  response regulator receiver/ANTAR domain-containing protein  42.03 
 
 
421 aa  289  7e-77  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3521  ANTAR domain protein with unknown sensor  43.48 
 
 
426 aa  285  1.0000000000000001e-75  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1708  response regulator receiver/ANTAR domain-containing protein  40.95 
 
 
431 aa  284  2.0000000000000002e-75  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.667897 
 
 
-
 
NC_008740  Maqu_0174  response regulator receiver/ANTAR domain-containing protein  35.7 
 
 
432 aa  272  9e-72  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1118  ANTAR domain protein with unknown sensor  37.32 
 
 
427 aa  239  5e-62  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008062  Bcen_5756  response regulator receiver/ANTAR domain-containing protein  36.53 
 
 
451 aa  228  1e-58  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.874095  n/a   
 
 
-
 
NC_008544  Bcen2424_6121  response regulator receiver/ANTAR domain-containing protein  36.53 
 
 
451 aa  228  1e-58  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.131957 
 
 
-
 
NC_011662  Tmz1t_1141  ANTAR domain protein with unknown sensor  38.31 
 
 
462 aa  228  1e-58  Thauera sp. MZ1T  Bacteria  normal  0.160464  n/a   
 
 
-
 
NC_010512  Bcenmc03_6603  response regulator receiver/ANTAR domain-containing protein  36.26 
 
 
451 aa  228  2e-58  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.684771 
 
 
-
 
NC_009436  Ent638_2326  response regulator receiver/ANTAR domain-containing protein  34.72 
 
 
394 aa  226  4e-58  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03665  nitrate-and nitrite-responsive positive regulator  30.34 
 
 
446 aa  183  4.0000000000000006e-45  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0329  response regulator receiver/ANTAR domain-containing protein  31.31 
 
 
464 aa  165  2.0000000000000002e-39  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1937  methyl-accepting chemotaxis protein  27.27 
 
 
662 aa  99.8  8e-20  Colwellia psychrerythraea 34H  Bacteria  normal  0.0215017  n/a   
 
 
-
 
NC_010505  Mrad2831_1563  methyl-accepting chemotaxis sensory transducer  30.74 
 
 
682 aa  99.8  9e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.543621  normal  0.0909129 
 
 
-
 
NC_007575  Suden_0989  methyl-accepting chemotaxis sensory transducer  27.21 
 
 
720 aa  91.7  2e-17  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4261  methyl-accepting chemotaxis sensory transducer  30.65 
 
 
679 aa  90.9  3e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.131059  normal  0.834811 
 
 
-
 
NC_009901  Spea_2242  methyl-accepting chemotaxis sensory transducer  25.26 
 
 
664 aa  86.7  8e-16  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0377  Nitrate and nitrite sensing domain protein  26.88 
 
 
661 aa  86.3  0.000000000000001  Sulfurospirillum deleyianum DSM 6946  Bacteria  decreased coverage  0.000413313  n/a   
 
 
-
 
NC_007575  Suden_0209  methyl-accepting chemotaxis sensory transducer  25.4 
 
 
658 aa  84.7  0.000000000000003  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.603066  n/a   
 
 
-
 
NC_010172  Mext_3893  nitrate and nitrite sensing domain-containing protein  29.09 
 
 
679 aa  83.2  0.000000000000008  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.252207 
 
 
-
 
NC_008345  Sfri_1352  methyl-accepting chemotaxis sensory transducer  26.25 
 
 
668 aa  81.3  0.00000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1685  methyl-accepting chemotaxis sensory transducer  25.45 
 
 
664 aa  80.5  0.00000000000005  Shewanella sp. MR-4  Bacteria  normal  0.0832618  normal  0.158688 
 
 
-
 
NC_008577  Shewana3_1790  methyl-accepting chemotaxis sensory transducer  23.81 
 
 
664 aa  80.1  0.00000000000008  Shewanella sp. ANA-3  Bacteria  normal  0.119789  normal  0.182995 
 
 
-
 
NC_008322  Shewmr7_1760  methyl-accepting chemotaxis sensory transducer  24.73 
 
 
664 aa  79.3  0.0000000000001  Shewanella sp. MR-7  Bacteria  normal  0.106787  normal  0.536367 
 
 
-
 
NC_010814  Glov_1041  methyl-accepting chemotaxis sensory transducer  25.09 
 
 
661 aa  78.2  0.0000000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4364  methyl-accepting chemotaxis sensory transducer  30.92 
 
 
694 aa  76.3  0.0000000000009  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  27.31 
 
 
653 aa  75.9  0.000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_011894  Mnod_2871  response regulator receiver and ANTAR domain protein  57.14 
 
 
204 aa  76.3  0.000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.372726  n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  24.55 
 
 
653 aa  76.3  0.000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_010511  M446_3741  response regulator receiver/ANTAR domain-containing protein  41.74 
 
 
202 aa  75.9  0.000000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.755024  normal  0.109153 
 
 
-
 
NC_013421  Pecwa_0492  methyl-accepting chemotaxis sensory transducer  25.21 
 
 
649 aa  74.7  0.000000000003  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2830  response regulator receiver/ANTAR domain-containing protein  47.19 
 
 
206 aa  74.3  0.000000000004  Acidovorax sp. JS42  Bacteria  normal  normal  0.264074 
 
 
-
 
NC_011992  Dtpsy_2319  response regulator receiver and ANTAR domain protein  47.19 
 
 
206 aa  74.3  0.000000000004  Acidovorax ebreus TPSY  Bacteria  normal  0.781459  n/a   
 
 
-
 
NC_009438  Sputcn32_1813  methyl-accepting chemotaxis sensory transducer  25 
 
 
664 aa  73.9  0.000000000005  Shewanella putrefaciens CN-32  Bacteria  normal  0.280908  n/a   
 
 
-
 
NC_007575  Suden_0983  methyl-accepting chemotaxis sensory transducer  22.18 
 
 
720 aa  73.2  0.000000000008  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1929  methyl-accepting chemotaxis sensory transducer  24.14 
 
 
662 aa  73.2  0.000000000009  Shewanella loihica PV-4  Bacteria  normal  0.23754  normal  0.0188929 
 
 
-
 
NC_009997  Sbal195_1957  methyl-accepting chemotaxis sensory transducer  24.45 
 
 
664 aa  72.8  0.00000000001  Shewanella baltica OS195  Bacteria  normal  0.257458  normal  0.211978 
 
 
-
 
NC_010725  Mpop_5014  response regulator receiver and ANTAR domain protein  41.74 
 
 
195 aa  72.8  0.00000000001  Methylobacterium populi BJ001  Bacteria  normal  normal  0.757534 
 
 
-
 
NC_007908  Rfer_2553  response regulator receiver/ANTAR domain-containing protein  39.04 
 
 
215 aa  71.6  0.00000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2369  methyl-accepting chemotaxis sensory transducer  24.45 
 
 
664 aa  72  0.00000000002  Shewanella baltica OS223  Bacteria  normal  0.0315396  normal  0.0961625 
 
 
-
 
NC_011757  Mchl_4961  response regulator receiver and ANTAR domain protein  40.87 
 
 
195 aa  72  0.00000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.044252 
 
 
-
 
NC_008781  Pnap_1415  response regulator receiver/ANTAR domain-containing protein  44.94 
 
 
210 aa  72  0.00000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.609776  normal  0.778661 
 
 
-
 
NC_010172  Mext_4498  ANTAR domain-containing protein  40.87 
 
 
195 aa  72  0.00000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1950  methyl-accepting chemotaxis sensory transducer  24.45 
 
 
664 aa  71.6  0.00000000003  Shewanella baltica OS185  Bacteria  normal  0.0377955  n/a   
 
 
-
 
NC_008752  Aave_2149  response regulator receiver/ANTAR domain-containing protein  43.82 
 
 
208 aa  70.9  0.00000000004  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2302  response regulator receiver/ANTAR domain-containing protein  42.22 
 
 
195 aa  70.9  0.00000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.874561 
 
 
-
 
NC_002977  MCA0588  response regulator NasT  41.18 
 
 
191 aa  70.1  0.00000000006  Methylococcus capsulatus str. Bath  Bacteria  normal  0.419145  n/a   
 
 
-
 
NC_008700  Sama_1713  putative methyl-accepting chemotaxis sensory transducer  24.91 
 
 
666 aa  69.3  0.0000000001  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000425798  normal  0.0665929 
 
 
-
 
NC_008786  Veis_2589  Fis family transcriptional regulator  47.19 
 
 
208 aa  69.3  0.0000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0488842 
 
 
-
 
NC_010506  Swoo_2282  methyl-accepting chemotaxis sensory transducer  25 
 
 
664 aa  69.3  0.0000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  0.330304  normal 
 
 
-
 
NC_010717  PXO_01489  histidine kinase/response regulator hybrid protein  57.14 
 
 
83 aa  65.9  0.000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0413  methyl-accepting chemotaxis sensory transducer  24.03 
 
 
653 aa  65.9  0.000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1251  methyl-accepting chemotaxis sensory transducer  27.12 
 
 
646 aa  65.9  0.000000001  Dickeya zeae Ech1591  Bacteria  normal  0.457093  n/a   
 
 
-
 
NC_009654  Mmwyl1_2821  response regulator receiver/ANTAR domain-containing protein  31.34 
 
 
224 aa  65.9  0.000000001  Marinomonas sp. MWYL1  Bacteria  normal  0.41961  normal  0.477248 
 
 
-
 
NC_010338  Caul_2959  response regulator receiver/ANTAR domain-containing protein  39.78 
 
 
192 aa  65.5  0.000000002  Caulobacter sp. K31  Bacteria  normal  normal  0.793007 
 
 
-
 
NC_011988  Avi_5900  two component response regulator  38.2 
 
 
195 aa  65.1  0.000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1114  methyl-accepting chemotaxis sensory transducer  25.79 
 
 
700 aa  64.7  0.000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.655641 
 
 
-
 
NC_007948  Bpro_3266  response regulator receiver/ANTAR domain-containing protein  41.57 
 
 
210 aa  65.1  0.000000003  Polaromonas sp. JS666  Bacteria  normal  0.559806  normal 
 
 
-
 
NC_008254  Meso_1448  response regulator receiver/ANTAR domain-containing protein  54.24 
 
 
196 aa  65.1  0.000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4455  response regulator receiver/ANTAR domain-containing protein  41.57 
 
 
196 aa  65.1  0.000000003  Paracoccus denitrificans PD1222  Bacteria  normal  0.269789  normal 
 
 
-
 
NC_007347  Reut_A0331  response regulator receiver:ANTAR  55.56 
 
 
214 aa  64.3  0.000000004  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2284  methyl-accepting chemotaxis sensory transducer  26.29 
 
 
653 aa  63.9  0.000000005  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00297466 
 
 
-
 
NC_011369  Rleg2_1455  response regulator receiver and ANTAR domain protein  40.7 
 
 
195 aa  63.5  0.000000007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.770993 
 
 
-
 
NC_009952  Dshi_1661  transcription antitermination regulatory protein  46.77 
 
 
194 aa  63.2  0.000000008  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.00275655 
 
 
-
 
NC_009831  Ssed_2325  methyl-accepting chemotaxis sensory transducer  27.07 
 
 
664 aa  63.2  0.000000008  Shewanella sediminis HAW-EB3  Bacteria  normal  0.100516  hitchhiker  0.00420774 
 
 
-
 
NC_009720  Xaut_1086  response regulator receiver/ANTAR domain-containing protein  34.78 
 
 
202 aa  63.2  0.000000009  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1784  response regulator receiver  36.07 
 
 
191 aa  62.4  0.00000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3706  methyl-accepting chemotaxis sensory transducer  32.53 
 
 
684 aa  62.8  0.00000001  Methylobacterium sp. 4-46  Bacteria  normal  0.677815  hitchhiker  0.00614515 
 
 
-
 
NC_007794  Saro_2973  response regulator receiver/ANTAR domain-containing protein  41.94 
 
 
217 aa  62.8  0.00000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4227  response regulator receiver and ANTAR domain protein  35.96 
 
 
194 aa  62.4  0.00000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0711042  n/a   
 
 
-
 
NC_012850  Rleg_1632  response regulator receiver and ANTAR domain protein  38.2 
 
 
207 aa  63.2  0.00000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0623893 
 
 
-
 
NC_008825  Mpe_A1393  putative response regulator transcription regulator protein  39.33 
 
 
210 aa  63.2  0.00000001  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.40238 
 
 
-
 
NC_003910  CPS_3317  putative response regulator NasT  32.5 
 
 
201 aa  62  0.00000002  Colwellia psychrerythraea 34H  Bacteria  normal  0.0234612  n/a   
 
 
-
 
NC_007404  Tbd_2271  response regulator receiver domain-containing protein  43.37 
 
 
188 aa  62.4  0.00000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.187486  normal 
 
 
-
 
NC_009620  Smed_4528  response regulator receiver/ANTAR domain-containing protein  37.21 
 
 
196 aa  62  0.00000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_23450  response regulator NasT  48.53 
 
 
192 aa  61.6  0.00000003  Azotobacter vinelandii DJ  Bacteria  normal  0.212044  n/a   
 
 
-
 
NC_009439  Pmen_2581  response regulator receiver/ANTAR domain-containing protein  37.27 
 
 
192 aa  61.6  0.00000003  Pseudomonas mendocina ymp  Bacteria  normal  0.298585  hitchhiker  0.00648362 
 
 
-
 
NC_007298  Daro_3695  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  26.22 
 
 
930 aa  60.8  0.00000004  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  33.68 
 
 
195 aa  60.8  0.00000004  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1762  response regulator receiver/ANTAR domain-containing protein  35.96 
 
 
194 aa  60.8  0.00000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.48447  normal  0.0125916 
 
 
-
 
NC_007973  Rmet_0278  response regulator receiver/ANTAR domain-containing protein  53.45 
 
 
219 aa  60.8  0.00000004  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0382  response regulator transcription regulator protein  41.18 
 
 
195 aa  60.5  0.00000005  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.846144 
 
 
-
 
NC_009511  Swit_1703  response regulator receiver/ANTAR domain-containing protein  35.87 
 
 
193 aa  60.5  0.00000006  Sphingomonas wittichii RW1  Bacteria  normal  0.242071  normal 
 
 
-
 
NC_008463  PA14_41490  hypothetical protein  48.53 
 
 
192 aa  60.1  0.00000008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3519  hypothetical protein  48.53 
 
 
192 aa  60.1  0.00000008  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0259  response regulator receiver and ANTAR domain protein  39.77 
 
 
212 aa  59.7  0.0000001  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4139  response regulator receiver/ANTAR domain-containing protein  35.96 
 
 
196 aa  59.3  0.0000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.214536 
 
 
-
 
NC_003910  CPS_0763  methyl-accepting chemotaxis protein  23.77 
 
 
661 aa  58.9  0.0000002  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0769  response regulator receiver/ANTAR domain-containing protein  53.85 
 
 
214 aa  58.5  0.0000002  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0679202  n/a   
 
 
-
 
NC_010524  Lcho_2675  response regulator receiver/ANTAR domain-containing protein  41.25 
 
 
383 aa  58.9  0.0000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010682  Rpic_0238  response regulator receiver and ANTAR domain protein  38.64 
 
 
212 aa  58.9  0.0000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1611  response regulator receiver/ANTAR domain-containing protein  34.43 
 
 
191 aa  58.2  0.0000003  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000000101988 
 
 
-
 
NC_009720  Xaut_2506  response regulator receiver/ANTAR domain-containing protein  36.45 
 
 
221 aa  58.2  0.0000003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.187461  normal 
 
 
-
 
NC_004578  PSPTO_2306  response regulator NasT  44.93 
 
 
191 aa  57.8  0.0000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
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