175 homologs were found in PanDaTox collection
for query gene Vapar_3521 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_3521  ANTAR domain protein with unknown sensor  100 
 
 
426 aa  855    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2378  response regulator receiver/ANTAR domain-containing protein  54.93 
 
 
421 aa  423  1e-117  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0664  ANTAR domain protein with unknown sensor  43.79 
 
 
441 aa  313  3.9999999999999997e-84  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.293281  normal  0.015345 
 
 
-
 
NC_008340  Mlg_1708  response regulator receiver/ANTAR domain-containing protein  45 
 
 
431 aa  305  9.000000000000001e-82  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.667897 
 
 
-
 
NC_009832  Spro_2910  response regulator receiver/ANTAR domain-containing protein  44.02 
 
 
426 aa  290  3e-77  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1538  ANTAR domain protein with unknown sensor  42.82 
 
 
429 aa  286  5.999999999999999e-76  Pectobacterium wasabiae WPP163  Bacteria  normal  0.585588  n/a   
 
 
-
 
NC_011662  Tmz1t_1141  ANTAR domain protein with unknown sensor  40.52 
 
 
462 aa  280  4e-74  Thauera sp. MZ1T  Bacteria  normal  0.160464  n/a   
 
 
-
 
NC_012917  PC1_2735  ANTAR domain protein with unknown sensor  43.48 
 
 
429 aa  273  4.0000000000000004e-72  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0721448  n/a   
 
 
-
 
NC_013422  Hneap_1118  ANTAR domain protein with unknown sensor  37.56 
 
 
427 aa  263  3e-69  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2508  ANTAR domain protein with unknown sensor  42.13 
 
 
427 aa  263  6e-69  Dickeya dadantii Ech703  Bacteria  normal  0.102211  n/a   
 
 
-
 
NC_008740  Maqu_0174  response regulator receiver/ANTAR domain-containing protein  37.5 
 
 
432 aa  260  4e-68  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1437  ANTAR domain protein with unknown sensor  40.33 
 
 
429 aa  256  6e-67  Dickeya zeae Ech1591  Bacteria  normal  0.997771  n/a   
 
 
-
 
NC_008062  Bcen_5756  response regulator receiver/ANTAR domain-containing protein  37.35 
 
 
451 aa  228  1e-58  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.874095  n/a   
 
 
-
 
NC_008544  Bcen2424_6121  response regulator receiver/ANTAR domain-containing protein  37.35 
 
 
451 aa  228  1e-58  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.131957 
 
 
-
 
NC_010512  Bcenmc03_6603  response regulator receiver/ANTAR domain-containing protein  37.35 
 
 
451 aa  228  2e-58  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.684771 
 
 
-
 
NC_011138  MADE_03665  nitrate-and nitrite-responsive positive regulator  34.58 
 
 
446 aa  216  5e-55  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0329  response regulator receiver/ANTAR domain-containing protein  30.57 
 
 
464 aa  199  7e-50  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2326  response regulator receiver/ANTAR domain-containing protein  28.22 
 
 
394 aa  148  2.0000000000000003e-34  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_0377  Nitrate and nitrite sensing domain protein  27.14 
 
 
661 aa  105  1e-21  Sulfurospirillum deleyianum DSM 6946  Bacteria  decreased coverage  0.000413313  n/a   
 
 
-
 
NC_003910  CPS_1937  methyl-accepting chemotaxis protein  26.64 
 
 
662 aa  101  2e-20  Colwellia psychrerythraea 34H  Bacteria  normal  0.0215017  n/a   
 
 
-
 
NC_008345  Sfri_1352  methyl-accepting chemotaxis sensory transducer  27.08 
 
 
668 aa  84.3  0.000000000000004  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1114  methyl-accepting chemotaxis sensory transducer  26.77 
 
 
700 aa  84  0.000000000000005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.655641 
 
 
-
 
NC_007575  Suden_0209  methyl-accepting chemotaxis sensory transducer  22.68 
 
 
658 aa  83.6  0.000000000000006  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.603066  n/a   
 
 
-
 
NC_010505  Mrad2831_1563  methyl-accepting chemotaxis sensory transducer  33.09 
 
 
682 aa  82.4  0.00000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.543621  normal  0.0909129 
 
 
-
 
NC_007575  Suden_0983  methyl-accepting chemotaxis sensory transducer  21.53 
 
 
720 aa  82.4  0.00000000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4261  methyl-accepting chemotaxis sensory transducer  32.16 
 
 
679 aa  81.3  0.00000000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.131059  normal  0.834811 
 
 
-
 
NC_007298  Daro_3695  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  30.22 
 
 
930 aa  80.1  0.00000000000007  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1251  methyl-accepting chemotaxis sensory transducer  28.46 
 
 
646 aa  79.3  0.0000000000001  Dickeya zeae Ech1591  Bacteria  normal  0.457093  n/a   
 
 
-
 
NC_007575  Suden_0989  methyl-accepting chemotaxis sensory transducer  21.74 
 
 
720 aa  75.9  0.000000000001  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2369  methyl-accepting chemotaxis sensory transducer  28.07 
 
 
664 aa  76.3  0.000000000001  Shewanella baltica OS223  Bacteria  normal  0.0315396  normal  0.0961625 
 
 
-
 
NC_010172  Mext_3893  nitrate and nitrite sensing domain-containing protein  31.34 
 
 
679 aa  75.1  0.000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.252207 
 
 
-
 
NC_009997  Sbal195_1957  methyl-accepting chemotaxis sensory transducer  27.56 
 
 
664 aa  72.4  0.00000000001  Shewanella baltica OS195  Bacteria  normal  0.257458  normal  0.211978 
 
 
-
 
NC_003910  CPS_0763  methyl-accepting chemotaxis protein  24.9 
 
 
661 aa  72  0.00000000002  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4364  methyl-accepting chemotaxis sensory transducer  30.92 
 
 
694 aa  72  0.00000000002  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1950  methyl-accepting chemotaxis sensory transducer  27.24 
 
 
664 aa  71.2  0.00000000003  Shewanella baltica OS185  Bacteria  normal  0.0377955  n/a   
 
 
-
 
NC_009901  Spea_2242  methyl-accepting chemotaxis sensory transducer  25.68 
 
 
664 aa  71.2  0.00000000003  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1760  methyl-accepting chemotaxis sensory transducer  26.5 
 
 
664 aa  70.9  0.00000000004  Shewanella sp. MR-7  Bacteria  normal  0.106787  normal  0.536367 
 
 
-
 
NC_008321  Shewmr4_1685  methyl-accepting chemotaxis sensory transducer  25.75 
 
 
664 aa  70.1  0.00000000007  Shewanella sp. MR-4  Bacteria  normal  0.0832618  normal  0.158688 
 
 
-
 
NC_011757  Mchl_4961  response regulator receiver and ANTAR domain protein  51.61 
 
 
195 aa  70.1  0.00000000007  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.044252 
 
 
-
 
NC_010172  Mext_4498  ANTAR domain-containing protein  51.61 
 
 
195 aa  70.1  0.00000000007  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0588  response regulator NasT  52.94 
 
 
191 aa  69.7  0.00000000009  Methylococcus capsulatus str. Bath  Bacteria  normal  0.419145  n/a   
 
 
-
 
NC_008577  Shewana3_1790  methyl-accepting chemotaxis sensory transducer  26.86 
 
 
664 aa  69.7  0.0000000001  Shewanella sp. ANA-3  Bacteria  normal  0.119789  normal  0.182995 
 
 
-
 
NC_008700  Sama_1713  putative methyl-accepting chemotaxis sensory transducer  26.13 
 
 
666 aa  69.3  0.0000000001  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000425798  normal  0.0665929 
 
 
-
 
NC_010814  Glov_1041  methyl-accepting chemotaxis sensory transducer  25.89 
 
 
661 aa  69.3  0.0000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_5014  response regulator receiver and ANTAR domain protein  50 
 
 
195 aa  68.9  0.0000000002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.757534 
 
 
-
 
NC_011988  Avi_5900  two component response regulator  38.6 
 
 
195 aa  66.2  0.000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4528  response regulator receiver/ANTAR domain-containing protein  39.47 
 
 
196 aa  66.2  0.000000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1632  response regulator receiver and ANTAR domain protein  40.35 
 
 
207 aa  65.5  0.000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0623893 
 
 
-
 
NC_011369  Rleg2_1455  response regulator receiver and ANTAR domain protein  39.47 
 
 
195 aa  65.1  0.000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.770993 
 
 
-
 
NC_009438  Sputcn32_1813  methyl-accepting chemotaxis sensory transducer  26.55 
 
 
664 aa  65.1  0.000000002  Shewanella putrefaciens CN-32  Bacteria  normal  0.280908  n/a   
 
 
-
 
NC_010505  Mrad2831_2302  response regulator receiver/ANTAR domain-containing protein  40.74 
 
 
195 aa  64.7  0.000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.874561 
 
 
-
 
NC_009092  Shew_1929  methyl-accepting chemotaxis sensory transducer  26.15 
 
 
662 aa  65.1  0.000000003  Shewanella loihica PV-4  Bacteria  normal  0.23754  normal  0.0188929 
 
 
-
 
NC_012880  Dd703_2657  methyl-accepting chemotaxis sensory transducer  25.61 
 
 
646 aa  64.3  0.000000004  Dickeya dadantii Ech703  Bacteria  normal  0.653915  n/a   
 
 
-
 
NC_011894  Mnod_2871  response regulator receiver and ANTAR domain protein  46.77 
 
 
204 aa  63.9  0.000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.372726  n/a   
 
 
-
 
NC_010511  M446_3741  response regulator receiver/ANTAR domain-containing protein  48.39 
 
 
202 aa  63.9  0.000000005  Methylobacterium sp. 4-46  Bacteria  normal  0.755024  normal  0.109153 
 
 
-
 
NC_009720  Xaut_1086  response regulator receiver/ANTAR domain-containing protein  39.51 
 
 
202 aa  63.9  0.000000006  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2325  methyl-accepting chemotaxis sensory transducer  24.91 
 
 
664 aa  63.2  0.000000009  Shewanella sediminis HAW-EB3  Bacteria  normal  0.100516  hitchhiker  0.00420774 
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  23.51 
 
 
653 aa  62  0.00000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_009952  Dshi_1661  transcription antitermination regulatory protein  37.38 
 
 
194 aa  62  0.00000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.00275655 
 
 
-
 
NC_008254  Meso_1448  response regulator receiver/ANTAR domain-containing protein  38.27 
 
 
196 aa  61.6  0.00000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1393  putative response regulator transcription regulator protein  37.17 
 
 
210 aa  60.8  0.00000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.40238 
 
 
-
 
NC_010506  Swoo_2282  methyl-accepting chemotaxis sensory transducer  31.06 
 
 
664 aa  60.1  0.00000007  Shewanella woodyi ATCC 51908  Bacteria  normal  0.330304  normal 
 
 
-
 
NC_009485  BBta_4139  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
196 aa  59.3  0.0000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.214536 
 
 
-
 
NC_012917  PC1_0413  methyl-accepting chemotaxis sensory transducer  24.92 
 
 
653 aa  58.9  0.0000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1703  response regulator receiver/ANTAR domain-containing protein  38.67 
 
 
193 aa  58.5  0.0000002  Sphingomonas wittichii RW1  Bacteria  normal  0.242071  normal 
 
 
-
 
NC_009654  Mmwyl1_2821  response regulator receiver/ANTAR domain-containing protein  38.57 
 
 
224 aa  58.5  0.0000002  Marinomonas sp. MWYL1  Bacteria  normal  0.41961  normal  0.477248 
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  24.25 
 
 
653 aa  57.8  0.0000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_007948  Bpro_3275  response regulator receiver/ANTAR domain-containing protein  34.35 
 
 
430 aa  58.2  0.0000003  Polaromonas sp. JS666  Bacteria  normal  0.197236  normal 
 
 
-
 
NC_013235  Namu_0678  response regulator receiver and ANTAR domain protein  34.95 
 
 
243 aa  58.2  0.0000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1211  response regulator receiver/ANTAR domain-containing protein  28.95 
 
 
194 aa  57.8  0.0000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1091  diguanylate cyclase/phosphodiesterase  26.48 
 
 
768 aa  57.4  0.0000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.107307  normal 
 
 
-
 
NC_010524  Lcho_2675  response regulator receiver/ANTAR domain-containing protein  37.5 
 
 
383 aa  57.8  0.0000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009720  Xaut_2506  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
221 aa  57.4  0.0000004  Xanthobacter autotrophicus Py2  Bacteria  normal  0.187461  normal 
 
 
-
 
NC_010511  M446_3706  methyl-accepting chemotaxis sensory transducer  30.88 
 
 
684 aa  57.4  0.0000005  Methylobacterium sp. 4-46  Bacteria  normal  0.677815  hitchhiker  0.00614515 
 
 
-
 
NC_011004  Rpal_4227  response regulator receiver and ANTAR domain protein  29.82 
 
 
194 aa  56.6  0.0000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0711042  n/a   
 
 
-
 
NC_007778  RPB_1762  response regulator receiver/ANTAR domain-containing protein  30.86 
 
 
194 aa  56.2  0.000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.48447  normal  0.0125916 
 
 
-
 
NC_010338  Caul_2959  response regulator receiver/ANTAR domain-containing protein  38.37 
 
 
192 aa  55.8  0.000001  Caulobacter sp. K31  Bacteria  normal  normal  0.793007 
 
 
-
 
NC_008781  Pnap_1415  response regulator receiver/ANTAR domain-containing protein  39.51 
 
 
210 aa  56.2  0.000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.609776  normal  0.778661 
 
 
-
 
NC_003910  CPS_3317  putative response regulator NasT  34.57 
 
 
201 aa  55.5  0.000002  Colwellia psychrerythraea 34H  Bacteria  normal  0.0234612  n/a   
 
 
-
 
NC_007404  Tbd_2271  response regulator receiver domain-containing protein  38.67 
 
 
188 aa  55.1  0.000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.187486  normal 
 
 
-
 
NC_007347  Reut_A0331  response regulator receiver:ANTAR  42.67 
 
 
214 aa  54.3  0.000004  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2319  response regulator receiver and ANTAR domain protein  34.17 
 
 
206 aa  54.3  0.000004  Acidovorax ebreus TPSY  Bacteria  normal  0.781459  n/a   
 
 
-
 
NC_008782  Ajs_2830  response regulator receiver/ANTAR domain-containing protein  34.17 
 
 
206 aa  54.3  0.000004  Acidovorax sp. JS42  Bacteria  normal  normal  0.264074 
 
 
-
 
NC_008825  Mpe_A2314  response regulator  40 
 
 
426 aa  54.3  0.000004  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2553  response regulator receiver/ANTAR domain-containing protein  45.16 
 
 
215 aa  53.9  0.000005  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3038  response regulator receiver/ANTAR domain-containing protein  35.8 
 
 
206 aa  53.5  0.000006  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_23450  response regulator NasT  44.78 
 
 
192 aa  53.9  0.000006  Azotobacter vinelandii DJ  Bacteria  normal  0.212044  n/a   
 
 
-
 
NC_008687  Pden_4455  response regulator receiver/ANTAR domain-containing protein  37.04 
 
 
196 aa  53.5  0.000008  Paracoccus denitrificans PD1222  Bacteria  normal  0.269789  normal 
 
 
-
 
NC_010717  PXO_01489  histidine kinase/response regulator hybrid protein  45.45 
 
 
83 aa  53.1  0.000008  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1968  response regulator receiver/ANTAR domain-containing protein  46.03 
 
 
193 aa  53.1  0.000009  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2581  response regulator receiver/ANTAR domain-containing protein  38.64 
 
 
192 aa  53.1  0.000009  Pseudomonas mendocina ymp  Bacteria  normal  0.298585  hitchhiker  0.00648362 
 
 
-
 
NC_010003  Pmob_0297  response regulator receiver/ANTAR domain-containing protein  37.1 
 
 
195 aa  53.1  0.000009  Petrotoga mobilis SJ95  Bacteria  normal  0.719259  n/a   
 
 
-
 
NC_007973  Rmet_0278  response regulator receiver/ANTAR domain-containing protein  44 
 
 
219 aa  52.8  0.00001  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2589  Fis family transcriptional regulator  41.33 
 
 
208 aa  52.8  0.00001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0488842 
 
 
-
 
NC_003295  RSc0382  response regulator transcription regulator protein  38.67 
 
 
195 aa  52.4  0.00002  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.846144 
 
 
-
 
NC_010086  Bmul_4144  response regulator receiver/ANTAR domain-containing protein  50.91 
 
 
201 aa  52  0.00002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.071014 
 
 
-
 
NC_012856  Rpic12D_0259  response regulator receiver and ANTAR domain protein  41.03 
 
 
212 aa  52.4  0.00002  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_41490  hypothetical protein  37.97 
 
 
192 aa  52.4  0.00002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2284  methyl-accepting chemotaxis sensory transducer  23.66 
 
 
653 aa  52  0.00002  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00297466 
 
 
-
 
NC_009656  PSPA7_3519  hypothetical protein  37.97 
 
 
192 aa  52  0.00002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
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