More than 300 homologs were found in PanDaTox collection
for query gene MCA0588 on replicon NC_002977
Organism: Methylococcus capsulatus str. Bath



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002977  MCA0588  response regulator NasT  100 
 
 
191 aa  374  1e-103  Methylococcus capsulatus str. Bath  Bacteria  normal  0.419145  n/a   
 
 
-
 
NC_009654  Mmwyl1_2821  response regulator receiver/ANTAR domain-containing protein  51.85 
 
 
224 aa  209  2e-53  Marinomonas sp. MWYL1  Bacteria  normal  0.41961  normal  0.477248 
 
 
-
 
NC_007298  Daro_0829  response regulator receiver:ANTAR  52.22 
 
 
191 aa  187  1e-46  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.018256 
 
 
-
 
NC_012560  Avin_23450  response regulator NasT  46.56 
 
 
192 aa  175  3e-43  Azotobacter vinelandii DJ  Bacteria  normal  0.212044  n/a   
 
 
-
 
NC_009720  Xaut_2506  response regulator receiver/ANTAR domain-containing protein  45.03 
 
 
221 aa  172  2.9999999999999996e-42  Xanthobacter autotrophicus Py2  Bacteria  normal  0.187461  normal 
 
 
-
 
NC_010086  Bmul_4144  response regulator receiver/ANTAR domain-containing protein  51.37 
 
 
201 aa  171  5.999999999999999e-42  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.071014 
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  42.55 
 
 
195 aa  169  2e-41  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_5014  response regulator receiver and ANTAR domain protein  44.74 
 
 
195 aa  169  2e-41  Methylobacterium populi BJ001  Bacteria  normal  normal  0.757534 
 
 
-
 
NC_010515  Bcenmc03_5794  response regulator receiver/ANTAR domain-containing protein  50.27 
 
 
198 aa  169  3e-41  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3858  response regulator receiver/ANTAR domain-containing protein  50.27 
 
 
219 aa  169  3e-41  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.853052  n/a   
 
 
-
 
NC_008543  Bcen2424_4510  response regulator receiver/ANTAR domain-containing protein  50.27 
 
 
219 aa  169  3e-41  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.000166869  normal 
 
 
-
 
NC_009439  Pmen_2581  response regulator receiver/ANTAR domain-containing protein  44.04 
 
 
192 aa  168  4e-41  Pseudomonas mendocina ymp  Bacteria  normal  0.298585  hitchhiker  0.00648362 
 
 
-
 
NC_008254  Meso_1448  response regulator receiver/ANTAR domain-containing protein  44.02 
 
 
196 aa  168  5e-41  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1340  response regulator receiver/ANTAR domain-containing protein  49.73 
 
 
198 aa  167  9e-41  Burkholderia sp. 383  Bacteria  normal  normal  0.579049 
 
 
-
 
NC_008463  PA14_41490  hypothetical protein  43.92 
 
 
192 aa  167  1e-40  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4498  ANTAR domain-containing protein  43.68 
 
 
195 aa  166  2e-40  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1784  response regulator receiver  43.39 
 
 
191 aa  165  2.9999999999999998e-40  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1604  response regulator receiver/ANTAR domain-containing protein  43.92 
 
 
191 aa  166  2.9999999999999998e-40  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0284464 
 
 
-
 
NC_011757  Mchl_4961  response regulator receiver and ANTAR domain protein  43.68 
 
 
195 aa  166  2.9999999999999998e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.044252 
 
 
-
 
NC_002947  PP_2093  response regulator receiver and ANTAR domain protein  43.39 
 
 
191 aa  165  4e-40  Pseudomonas putida KT2440  Bacteria  normal  0.966349  normal  0.0833699 
 
 
-
 
NC_004578  PSPTO_2306  response regulator NasT  43.92 
 
 
191 aa  165  4e-40  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3647  response regulator receiver/ANTAR domain-containing protein  43.39 
 
 
191 aa  165  4e-40  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4227  response regulator receiver and ANTAR domain protein  42.63 
 
 
194 aa  165  4e-40  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0711042  n/a   
 
 
-
 
NC_009485  BBta_4139  response regulator receiver/ANTAR domain-containing protein  43.16 
 
 
196 aa  164  5e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.214536 
 
 
-
 
NC_009656  PSPA7_3519  hypothetical protein  42.86 
 
 
192 aa  164  5e-40  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3940  response regulator receiver/ANTAR domain-containing protein  48.91 
 
 
198 aa  164  5.9999999999999996e-40  Burkholderia ambifaria AMMD  Bacteria  normal  0.590133  normal 
 
 
-
 
NC_010501  PputW619_1611  response regulator receiver/ANTAR domain-containing protein  44.44 
 
 
191 aa  164  5.9999999999999996e-40  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000000101988 
 
 
-
 
NC_010552  BamMC406_4403  response regulator receiver/ANTAR domain-containing protein  49.45 
 
 
198 aa  164  6.9999999999999995e-40  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.155669 
 
 
-
 
NC_007650  BTH_II1167  response regulator NasT  47.28 
 
 
198 aa  164  8e-40  Burkholderia thailandensis E264  Bacteria  normal  0.136185  n/a   
 
 
-
 
NC_009075  BURPS668_A1759  response regulator/ANTAR domain-containing protein  46.74 
 
 
198 aa  164  8e-40  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1090  response regulator NasT  46.74 
 
 
198 aa  164  9e-40  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0864919  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0246  response regulator NasT  46.74 
 
 
198 aa  164  9e-40  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1255  response regulator/ANTAR domain-containing protein  46.74 
 
 
198 aa  164  9e-40  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0422038  n/a   
 
 
-
 
NC_011988  Avi_5900  two component response regulator  42.33 
 
 
195 aa  164  9e-40  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1670  response regulator/ANTAR domain-containing protein  46.74 
 
 
198 aa  164  9e-40  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0087  response regulator/ANTAR domain-containing protein  46.74 
 
 
198 aa  164  9e-40  Burkholderia mallei SAVP1  Bacteria  normal  0.792302  n/a   
 
 
-
 
NC_008835  BMA10229_0333  response regulator NasT  46.74 
 
 
198 aa  164  9e-40  Burkholderia mallei NCTC 10229  Bacteria  normal  0.169956  n/a   
 
 
-
 
NC_007005  Psyr_2104  response regulator receiver:ANTAR  43.39 
 
 
191 aa  163  2.0000000000000002e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00575971 
 
 
-
 
NC_010505  Mrad2831_2302  response regulator receiver/ANTAR domain-containing protein  44.74 
 
 
195 aa  162  2.0000000000000002e-39  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.874561 
 
 
-
 
NC_012850  Rleg_1632  response regulator receiver and ANTAR domain protein  43.41 
 
 
207 aa  162  3e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0623893 
 
 
-
 
NC_011369  Rleg2_1455  response regulator receiver and ANTAR domain protein  42.86 
 
 
195 aa  162  4.0000000000000004e-39  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.770993 
 
 
-
 
NC_011894  Mnod_2871  response regulator receiver and ANTAR domain protein  46.35 
 
 
204 aa  162  4.0000000000000004e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.372726  n/a   
 
 
-
 
NC_008228  Patl_2529  response regulator receiver/ANTAR domain-containing protein  41.62 
 
 
212 aa  161  5.0000000000000005e-39  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4528  response regulator receiver/ANTAR domain-containing protein  42.78 
 
 
196 aa  161  6e-39  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_3266  response regulator receiver/ANTAR domain-containing protein  48.04 
 
 
210 aa  160  1e-38  Polaromonas sp. JS666  Bacteria  normal  0.559806  normal 
 
 
-
 
NC_010511  M446_3741  response regulator receiver/ANTAR domain-containing protein  47.12 
 
 
202 aa  160  1e-38  Methylobacterium sp. 4-46  Bacteria  normal  0.755024  normal  0.109153 
 
 
-
 
NC_007778  RPB_1762  response regulator receiver/ANTAR domain-containing protein  42.33 
 
 
194 aa  159  2e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.48447  normal  0.0125916 
 
 
-
 
NC_008781  Pnap_1415  response regulator receiver/ANTAR domain-containing protein  46.37 
 
 
210 aa  159  3e-38  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.609776  normal  0.778661 
 
 
-
 
NC_009720  Xaut_1086  response regulator receiver/ANTAR domain-containing protein  43.24 
 
 
202 aa  159  3e-38  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1393  putative response regulator transcription regulator protein  43.63 
 
 
210 aa  159  3e-38  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.40238 
 
 
-
 
NC_007404  Tbd_2271  response regulator receiver domain-containing protein  45.36 
 
 
188 aa  158  4e-38  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.187486  normal 
 
 
-
 
NC_008752  Aave_2149  response regulator receiver/ANTAR domain-containing protein  47.22 
 
 
208 aa  157  6e-38  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1661  transcription antitermination regulatory protein  43.92 
 
 
194 aa  156  1e-37  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.00275655 
 
 
-
 
NC_007925  RPC_1211  response regulator receiver/ANTAR domain-containing protein  41.8 
 
 
194 aa  157  1e-37  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2319  response regulator receiver and ANTAR domain protein  43.93 
 
 
206 aa  150  8.999999999999999e-36  Acidovorax ebreus TPSY  Bacteria  normal  0.781459  n/a   
 
 
-
 
NC_008782  Ajs_2830  response regulator receiver/ANTAR domain-containing protein  43.93 
 
 
206 aa  150  8.999999999999999e-36  Acidovorax sp. JS42  Bacteria  normal  normal  0.264074 
 
 
-
 
NC_009511  Swit_1703  response regulator receiver/ANTAR domain-containing protein  41.8 
 
 
193 aa  149  2e-35  Sphingomonas wittichii RW1  Bacteria  normal  0.242071  normal 
 
 
-
 
NC_007952  Bxe_B1048  response regulator receiver/ANTAR domain-containing protein  42.39 
 
 
191 aa  149  2e-35  Burkholderia xenovorans LB400  Bacteria  normal  0.192908  normal  0.77765 
 
 
-
 
NC_010623  Bphy_3445  response regulator receiver/ANTAR domain-containing protein  41.85 
 
 
191 aa  149  2e-35  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4455  response regulator receiver/ANTAR domain-containing protein  42.62 
 
 
196 aa  149  2e-35  Paracoccus denitrificans PD1222  Bacteria  normal  0.269789  normal 
 
 
-
 
NC_008786  Veis_2589  Fis family transcriptional regulator  46.89 
 
 
208 aa  149  2e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0488842 
 
 
-
 
NC_010676  Bphyt_5673  response regulator receiver and ANTAR domain protein  40.74 
 
 
191 aa  148  4e-35  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.598594 
 
 
-
 
NC_007973  Rmet_0278  response regulator receiver/ANTAR domain-containing protein  43.09 
 
 
219 aa  147  7e-35  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2959  response regulator receiver/ANTAR domain-containing protein  45.79 
 
 
192 aa  147  1.0000000000000001e-34  Caulobacter sp. K31  Bacteria  normal  normal  0.793007 
 
 
-
 
NC_011666  Msil_3768  response regulator receiver and ANTAR domain protein  39.68 
 
 
195 aa  145  4.0000000000000006e-34  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007908  Rfer_2553  response regulator receiver/ANTAR domain-containing protein  41.4 
 
 
215 aa  145  5e-34  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2973  response regulator receiver/ANTAR domain-containing protein  41.8 
 
 
217 aa  142  2e-33  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0331  response regulator receiver:ANTAR  40.96 
 
 
214 aa  140  8e-33  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1132  response regulator receiver/ANTAR domain-containing protein  42.11 
 
 
194 aa  139  1.9999999999999998e-32  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.169793  n/a   
 
 
-
 
NC_012856  Rpic12D_0259  response regulator receiver and ANTAR domain protein  42.77 
 
 
212 aa  138  3.9999999999999997e-32  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0382  response regulator transcription regulator protein  42.77 
 
 
195 aa  139  3.9999999999999997e-32  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.846144 
 
 
-
 
NC_010682  Rpic_0238  response regulator receiver and ANTAR domain protein  42.17 
 
 
212 aa  137  7.999999999999999e-32  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1262  response regulator receiver/ANTAR domain-containing protein  39.15 
 
 
193 aa  134  6.0000000000000005e-31  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.425993  normal 
 
 
-
 
NC_007802  Jann_3038  response regulator receiver/ANTAR domain-containing protein  38.95 
 
 
206 aa  134  9e-31  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0769  response regulator receiver/ANTAR domain-containing protein  34.95 
 
 
214 aa  128  5.0000000000000004e-29  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0679202  n/a   
 
 
-
 
NC_003910  CPS_3317  putative response regulator NasT  32.8 
 
 
201 aa  125  5e-28  Colwellia psychrerythraea 34H  Bacteria  normal  0.0234612  n/a   
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  34.88 
 
 
197 aa  115  3e-25  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_013235  Namu_0678  response regulator receiver and ANTAR domain protein  35.91 
 
 
243 aa  116  3e-25  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  35.71 
 
 
194 aa  114  6.9999999999999995e-25  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  35.71 
 
 
204 aa  112  2.0000000000000002e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  33.51 
 
 
196 aa  112  3e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  32.45 
 
 
196 aa  109  2.0000000000000002e-23  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  31.58 
 
 
198 aa  110  2.0000000000000002e-23  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  32.61 
 
 
194 aa  109  2.0000000000000002e-23  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  35.12 
 
 
205 aa  110  2.0000000000000002e-23  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  31.69 
 
 
194 aa  108  6e-23  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  33.68 
 
 
194 aa  107  7.000000000000001e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  35.36 
 
 
206 aa  107  1e-22  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_007948  Bpro_3275  response regulator receiver/ANTAR domain-containing protein  33.73 
 
 
430 aa  107  1e-22  Polaromonas sp. JS666  Bacteria  normal  0.197236  normal 
 
 
-
 
NC_008340  Mlg_2590  response regulator receiver/ANTAR domain-containing protein  38.92 
 
 
193 aa  107  1e-22  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  hitchhiker  0.0012524 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  32.75 
 
 
199 aa  105  3e-22  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
199 aa  105  4e-22  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_013131  Caci_5687  response regulator receiver and ANTAR domain protein  33.72 
 
 
210 aa  105  5e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  30.48 
 
 
191 aa  104  9e-22  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  35.19 
 
 
215 aa  103  2e-21  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  35.71 
 
 
213 aa  103  2e-21  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  34.52 
 
 
200 aa  102  3e-21  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2091  response regulator  32.43 
 
 
187 aa  102  3e-21  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  35.19 
 
 
220 aa  102  3e-21  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  35.8 
 
 
229 aa  102  3e-21  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
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