126 homologs were found in PanDaTox collection
for query gene MADE_03665 on replicon NC_011138
Organism: Alteromonas macleodii 'Deep ecotype'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011138  MADE_03665  nitrate-and nitrite-responsive positive regulator  100 
 
 
446 aa  916    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1118  ANTAR domain protein with unknown sensor  35.06 
 
 
427 aa  240  4e-62  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0664  ANTAR domain protein with unknown sensor  34.39 
 
 
441 aa  240  4e-62  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.293281  normal  0.015345 
 
 
-
 
NC_008740  Maqu_0174  response regulator receiver/ANTAR domain-containing protein  31.42 
 
 
432 aa  227  3e-58  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2378  response regulator receiver/ANTAR domain-containing protein  36.66 
 
 
421 aa  225  1e-57  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3521  ANTAR domain protein with unknown sensor  34.35 
 
 
426 aa  212  9e-54  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1141  ANTAR domain protein with unknown sensor  32.66 
 
 
462 aa  210  3e-53  Thauera sp. MZ1T  Bacteria  normal  0.160464  n/a   
 
 
-
 
NC_010512  Bcenmc03_6603  response regulator receiver/ANTAR domain-containing protein  33.81 
 
 
451 aa  202  9.999999999999999e-51  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.684771 
 
 
-
 
NC_008062  Bcen_5756  response regulator receiver/ANTAR domain-containing protein  33.81 
 
 
451 aa  201  1.9999999999999998e-50  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.874095  n/a   
 
 
-
 
NC_008544  Bcen2424_6121  response regulator receiver/ANTAR domain-containing protein  33.81 
 
 
451 aa  201  1.9999999999999998e-50  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.131957 
 
 
-
 
NC_008340  Mlg_1708  response regulator receiver/ANTAR domain-containing protein  34.04 
 
 
431 aa  198  2.0000000000000003e-49  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.667897 
 
 
-
 
NC_013421  Pecwa_1538  ANTAR domain protein with unknown sensor  29.86 
 
 
429 aa  187  4e-46  Pectobacterium wasabiae WPP163  Bacteria  normal  0.585588  n/a   
 
 
-
 
NC_012917  PC1_2735  ANTAR domain protein with unknown sensor  30.34 
 
 
429 aa  172  6.999999999999999e-42  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0721448  n/a   
 
 
-
 
NC_009832  Spro_2910  response regulator receiver/ANTAR domain-containing protein  32.34 
 
 
426 aa  171  3e-41  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1437  ANTAR domain protein with unknown sensor  29.81 
 
 
429 aa  160  6e-38  Dickeya zeae Ech1591  Bacteria  normal  0.997771  n/a   
 
 
-
 
NC_007947  Mfla_0329  response regulator receiver/ANTAR domain-containing protein  28.77 
 
 
464 aa  160  6e-38  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2508  ANTAR domain protein with unknown sensor  30.37 
 
 
427 aa  159  9e-38  Dickeya dadantii Ech703  Bacteria  normal  0.102211  n/a   
 
 
-
 
NC_009436  Ent638_2326  response regulator receiver/ANTAR domain-containing protein  28.36 
 
 
394 aa  126  8.000000000000001e-28  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1114  methyl-accepting chemotaxis sensory transducer  26.92 
 
 
700 aa  98.2  3e-19  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.655641 
 
 
-
 
NC_011757  Mchl_4261  methyl-accepting chemotaxis sensory transducer  29.7 
 
 
679 aa  90.5  5e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.131059  normal  0.834811 
 
 
-
 
NC_010172  Mext_3893  nitrate and nitrite sensing domain-containing protein  27.27 
 
 
679 aa  86.7  7e-16  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.252207 
 
 
-
 
NC_003910  CPS_0763  methyl-accepting chemotaxis protein  25.71 
 
 
661 aa  84.3  0.000000000000004  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  24.51 
 
 
653 aa  82.4  0.00000000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_010501  PputW619_2284  methyl-accepting chemotaxis sensory transducer  26.34 
 
 
653 aa  81.6  0.00000000000003  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00297466 
 
 
-
 
NC_003910  CPS_1937  methyl-accepting chemotaxis protein  26.18 
 
 
662 aa  80.9  0.00000000000004  Colwellia psychrerythraea 34H  Bacteria  normal  0.0215017  n/a   
 
 
-
 
NC_010814  Glov_1041  methyl-accepting chemotaxis sensory transducer  27.84 
 
 
661 aa  79.7  0.00000000000009  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  24.7 
 
 
653 aa  79.3  0.0000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_007575  Suden_0983  methyl-accepting chemotaxis sensory transducer  26.05 
 
 
720 aa  79.3  0.0000000000001  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0209  methyl-accepting chemotaxis sensory transducer  25.82 
 
 
658 aa  79  0.0000000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.603066  n/a   
 
 
-
 
NC_013421  Pecwa_0492  methyl-accepting chemotaxis sensory transducer  26.46 
 
 
649 aa  77  0.0000000000006  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2242  methyl-accepting chemotaxis sensory transducer  27.56 
 
 
664 aa  77  0.0000000000007  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4364  methyl-accepting chemotaxis sensory transducer  28.29 
 
 
694 aa  77  0.0000000000007  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_0377  Nitrate and nitrite sensing domain protein  27.16 
 
 
661 aa  76.3  0.000000000001  Sulfurospirillum deleyianum DSM 6946  Bacteria  decreased coverage  0.000413313  n/a   
 
 
-
 
NC_007575  Suden_0989  methyl-accepting chemotaxis sensory transducer  25.55 
 
 
720 aa  69.7  0.0000000001  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2325  methyl-accepting chemotaxis sensory transducer  25.83 
 
 
664 aa  69.3  0.0000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  0.100516  hitchhiker  0.00420774 
 
 
-
 
NC_012912  Dd1591_1251  methyl-accepting chemotaxis sensory transducer  25.81 
 
 
646 aa  69.3  0.0000000001  Dickeya zeae Ech1591  Bacteria  normal  0.457093  n/a   
 
 
-
 
NC_012917  PC1_0413  methyl-accepting chemotaxis sensory transducer  24.81 
 
 
653 aa  69.7  0.0000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1563  methyl-accepting chemotaxis sensory transducer  25.52 
 
 
682 aa  68.6  0.0000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.543621  normal  0.0909129 
 
 
-
 
NC_008345  Sfri_1352  methyl-accepting chemotaxis sensory transducer  25 
 
 
668 aa  67.8  0.0000000004  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2282  methyl-accepting chemotaxis sensory transducer  22.38 
 
 
664 aa  66.6  0.0000000009  Shewanella woodyi ATCC 51908  Bacteria  normal  0.330304  normal 
 
 
-
 
NC_009092  Shew_1929  methyl-accepting chemotaxis sensory transducer  22.91 
 
 
662 aa  64.7  0.000000003  Shewanella loihica PV-4  Bacteria  normal  0.23754  normal  0.0188929 
 
 
-
 
NC_011663  Sbal223_2369  methyl-accepting chemotaxis sensory transducer  25.09 
 
 
664 aa  61.2  0.00000003  Shewanella baltica OS223  Bacteria  normal  0.0315396  normal  0.0961625 
 
 
-
 
NC_009997  Sbal195_1957  methyl-accepting chemotaxis sensory transducer  25.96 
 
 
664 aa  61.2  0.00000004  Shewanella baltica OS195  Bacteria  normal  0.257458  normal  0.211978 
 
 
-
 
NC_007298  Daro_3695  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  25.38 
 
 
930 aa  60.5  0.00000006  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1760  methyl-accepting chemotaxis sensory transducer  24.11 
 
 
664 aa  59.7  0.0000001  Shewanella sp. MR-7  Bacteria  normal  0.106787  normal  0.536367 
 
 
-
 
NC_008340  Mlg_1091  diguanylate cyclase/phosphodiesterase  24.44 
 
 
768 aa  59.3  0.0000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.107307  normal 
 
 
-
 
NC_008577  Shewana3_1790  methyl-accepting chemotaxis sensory transducer  23.3 
 
 
664 aa  59.7  0.0000001  Shewanella sp. ANA-3  Bacteria  normal  0.119789  normal  0.182995 
 
 
-
 
NC_008700  Sama_1713  putative methyl-accepting chemotaxis sensory transducer  22.96 
 
 
666 aa  59.7  0.0000001  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000425798  normal  0.0665929 
 
 
-
 
NC_009438  Sputcn32_1813  methyl-accepting chemotaxis sensory transducer  25.38 
 
 
664 aa  58.2  0.0000003  Shewanella putrefaciens CN-32  Bacteria  normal  0.280908  n/a   
 
 
-
 
NC_012880  Dd703_2657  methyl-accepting chemotaxis sensory transducer  25.3 
 
 
646 aa  57.8  0.0000004  Dickeya dadantii Ech703  Bacteria  normal  0.653915  n/a   
 
 
-
 
NC_009665  Shew185_1950  methyl-accepting chemotaxis sensory transducer  25.7 
 
 
664 aa  57.8  0.0000004  Shewanella baltica OS185  Bacteria  normal  0.0377955  n/a   
 
 
-
 
NC_010511  M446_3706  methyl-accepting chemotaxis sensory transducer  28.23 
 
 
684 aa  57.4  0.0000005  Methylobacterium sp. 4-46  Bacteria  normal  0.677815  hitchhiker  0.00614515 
 
 
-
 
NC_010725  Mpop_5014  response regulator receiver and ANTAR domain protein  50 
 
 
195 aa  57.4  0.0000005  Methylobacterium populi BJ001  Bacteria  normal  normal  0.757534 
 
 
-
 
NC_010505  Mrad2831_2302  response regulator receiver/ANTAR domain-containing protein  50 
 
 
195 aa  57  0.0000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.874561 
 
 
-
 
NC_010172  Mext_4498  ANTAR domain-containing protein  48.33 
 
 
195 aa  56.6  0.0000009  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4961  response regulator receiver and ANTAR domain protein  48.33 
 
 
195 aa  56.6  0.0000009  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.044252 
 
 
-
 
NC_008781  Pnap_1415  response regulator receiver/ANTAR domain-containing protein  34.62 
 
 
210 aa  56.2  0.000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.609776  normal  0.778661 
 
 
-
 
NC_008825  Mpe_A1393  putative response regulator transcription regulator protein  37.18 
 
 
210 aa  55.5  0.000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.40238 
 
 
-
 
NC_010511  M446_3741  response regulator receiver/ANTAR domain-containing protein  48.33 
 
 
202 aa  55.8  0.000002  Methylobacterium sp. 4-46  Bacteria  normal  0.755024  normal  0.109153 
 
 
-
 
NC_007948  Bpro_3266  response regulator receiver/ANTAR domain-containing protein  34.62 
 
 
210 aa  54.7  0.000003  Polaromonas sp. JS666  Bacteria  normal  0.559806  normal 
 
 
-
 
NC_011894  Mnod_2871  response regulator receiver and ANTAR domain protein  46.67 
 
 
204 aa  54.7  0.000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.372726  n/a   
 
 
-
 
NC_008321  Shewmr4_1685  methyl-accepting chemotaxis sensory transducer  22.94 
 
 
664 aa  54.3  0.000004  Shewanella sp. MR-4  Bacteria  normal  0.0832618  normal  0.158688 
 
 
-
 
NC_010338  Caul_2959  response regulator receiver/ANTAR domain-containing protein  30.43 
 
 
192 aa  53.5  0.000007  Caulobacter sp. K31  Bacteria  normal  normal  0.793007 
 
 
-
 
NC_008752  Aave_2149  response regulator receiver/ANTAR domain-containing protein  36 
 
 
208 aa  53.1  0.00001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_01489  histidine kinase/response regulator hybrid protein  41.94 
 
 
83 aa  52.8  0.00001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3317  putative response regulator NasT  30.77 
 
 
201 aa  51.6  0.00003  Colwellia psychrerythraea 34H  Bacteria  normal  0.0234612  n/a   
 
 
-
 
NC_008254  Meso_1448  response regulator receiver/ANTAR domain-containing protein  42.37 
 
 
196 aa  51.6  0.00003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3099  methyl-accepting chemotaxis sensory transducer  25 
 
 
672 aa  51.6  0.00003  Marinobacter aquaeolei VT8  Bacteria  normal  0.500846  n/a   
 
 
-
 
NC_009620  Smed_4528  response regulator receiver/ANTAR domain-containing protein  28.67 
 
 
196 aa  51.2  0.00004  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0259  response regulator receiver and ANTAR domain protein  29.87 
 
 
212 aa  50.8  0.00005  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0238  response regulator receiver and ANTAR domain protein  29.87 
 
 
212 aa  50.8  0.00005  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1383  methyl-accepting chemotaxis sensory transducer  25.3 
 
 
705 aa  50.4  0.00006  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0888  response regulator  28.74 
 
 
191 aa  50.1  0.00008  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2506  response regulator receiver/ANTAR domain-containing protein  42.37 
 
 
221 aa  49.3  0.0001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.187461  normal 
 
 
-
 
NC_010424  Daud_2028  response regulator receiver/ANTAR domain-containing protein  35.48 
 
 
192 aa  49.3  0.0001  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000049817  n/a   
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  32.43 
 
 
202 aa  49.3  0.0002  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_009720  Xaut_1086  response regulator receiver/ANTAR domain-containing protein  36.71 
 
 
202 aa  48.9  0.0002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0382  response regulator transcription regulator protein  29.87 
 
 
195 aa  48.1  0.0003  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.846144 
 
 
-
 
NC_008786  Veis_2589  Fis family transcriptional regulator  32.89 
 
 
208 aa  48.1  0.0003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0488842 
 
 
-
 
NC_009483  Gura_1146  response regulator receiver/ANTAR domain-containing protein  29.73 
 
 
188 aa  48.1  0.0003  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_009485  BBta_4139  response regulator receiver/ANTAR domain-containing protein  36.84 
 
 
196 aa  48.1  0.0003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.214536 
 
 
-
 
NC_011369  Rleg2_1455  response regulator receiver and ANTAR domain protein  34.62 
 
 
195 aa  48.1  0.0003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.770993 
 
 
-
 
NC_012850  Rleg_1632  response regulator receiver and ANTAR domain protein  33.33 
 
 
207 aa  47.8  0.0004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0623893 
 
 
-
 
NC_011004  Rpal_4227  response regulator receiver and ANTAR domain protein  35.53 
 
 
194 aa  47.8  0.0004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0711042  n/a   
 
 
-
 
NC_002977  MCA0588  response regulator NasT  38.98 
 
 
191 aa  47.4  0.0005  Methylococcus capsulatus str. Bath  Bacteria  normal  0.419145  n/a   
 
 
-
 
NC_008061  Bcen_3858  response regulator receiver/ANTAR domain-containing protein  38.1 
 
 
219 aa  47.4  0.0005  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.853052  n/a   
 
 
-
 
NC_008543  Bcen2424_4510  response regulator receiver/ANTAR domain-containing protein  38.1 
 
 
219 aa  47.4  0.0005  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.000166869  normal 
 
 
-
 
NC_010515  Bcenmc03_5794  response regulator receiver/ANTAR domain-containing protein  38.1 
 
 
198 aa  47.4  0.0005  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  34.41 
 
 
194 aa  47.4  0.0005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_007511  Bcep18194_B1340  response regulator receiver/ANTAR domain-containing protein  34.78 
 
 
198 aa  47.4  0.0006  Burkholderia sp. 383  Bacteria  normal  normal  0.579049 
 
 
-
 
NC_007778  RPB_1762  response regulator receiver/ANTAR domain-containing protein  36.84 
 
 
194 aa  47.4  0.0006  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.48447  normal  0.0125916 
 
 
-
 
NC_008740  Maqu_3269  methyl-accepting chemotaxis sensory transducer  23.98 
 
 
605 aa  47  0.0006  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.000515244  n/a   
 
 
-
 
NC_008391  Bamb_3940  response regulator receiver/ANTAR domain-containing protein  34.78 
 
 
198 aa  47  0.0007  Burkholderia ambifaria AMMD  Bacteria  normal  0.590133  normal 
 
 
-
 
NC_008609  Ppro_3459  response regulator receiver/ANTAR domain-containing protein  33.71 
 
 
205 aa  47  0.0007  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  36.84 
 
 
198 aa  47  0.0007  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_007298  Daro_0829  response regulator receiver:ANTAR  28.21 
 
 
191 aa  46.6  0.0008  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.018256 
 
 
-
 
NC_007925  RPC_1211  response regulator receiver/ANTAR domain-containing protein  35.53 
 
 
194 aa  47  0.0008  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1295  response regulator receiver/ANTAR domain-containing protein  37.5 
 
 
208 aa  45.8  0.001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.153579  normal  0.0128304 
 
 
-
 
NC_013385  Adeg_1890  response regulator receiver and ANTAR domain protein  27.19 
 
 
197 aa  46.6  0.001  Ammonifex degensii KC4  Bacteria  normal  0.0366782  n/a   
 
 
-
 
NC_011988  Avi_5900  two component response regulator  36.92 
 
 
195 aa  46.6  0.001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
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