Gene CPF_0888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_0888 
Symbol 
ID4201426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp1053227 
End bp1053802 
Gene Length576 bp 
Protein Length191 aa 
Translation table11 
GC content30% 
IMG OID638081770 
Productresponse regulator 
Protein accessionYP_695337 
Protein GI110800556 
COG category[T] Signal transduction mechanisms 
COG ID[COG3707] Response regulator with putative antiterminator output domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGAA CTATAGTAAT AGTCGATGAT GAGCCTATTA CAAGAATGGA TACAAGAGAA 
ATTTTAGAGG CTAATGGATA CGATGTTGTA GGAGAGGCTT CTGATGGTTT TGAAGCAATT
GAAGTTTGTA AGAAATATAA TCCTAGCTTA GTTTTAATGG ACATAGATAT GCCTTTATTA
GATGGAATAA AAGCTAGTAA GGTATTAACT AAGGAAAAAT TAGTTGGGGG CGTAATATTA
TTAACAGCAT TTGAAGACAA AAAGTATATT GAAATGGCTA AAGAAGTAGG AGCCTTTGGA
TATATGATTA AGCCTGTAAA TGAGAAGGTA TTTATTCCTA CTGTAGAAAT GTGCTTATCA
AAGGCAGAAG AATTTGATGA ACTAAAAAAA GATTATGATA AAATAAACAA TAAATTAAAT
GATAGAAAGT TAATAGAGAA GGCAAAAGGA ATACTTGTTA AGCAATTAAA CTCAAATGAG
AATGATGCTT ATAACAGAAT AAGAAAATTA AGTATGGATA GAAGAACTAC CATGGCTGAA
ATAGCAAAAA TAATAATTGT TGGTTATGAG GGATAA
 
Protein sequence
MKRTIVIVDD EPITRMDTRE ILEANGYDVV GEASDGFEAI EVCKKYNPSL VLMDIDMPLL 
DGIKASKVLT KEKLVGGVIL LTAFEDKKYI EMAKEVGAFG YMIKPVNEKV FIPTVEMCLS
KAEEFDELKK DYDKINNKLN DRKLIEKAKG ILVKQLNSNE NDAYNRIRKL SMDRRTTMAE
IAKIIIVGYE G