More than 300 homologs were found in PanDaTox collection
for query gene CPF_0888 on replicon NC_008261
Organism: Clostridium perfringens ATCC 13124



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008261  CPF_0888  response regulator  100 
 
 
191 aa  380  1e-105  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1051  response regulator receiver and ANTAR domain protein  52.13 
 
 
192 aa  204  5e-52  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0084  response regulator receiver and ANTAR domain protein  48.65 
 
 
242 aa  182  2.0000000000000003e-45  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.682854  n/a   
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  45.7 
 
 
197 aa  180  9.000000000000001e-45  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  43.55 
 
 
191 aa  165  2.9999999999999998e-40  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_013595  Sros_2955  response regulator  37.89 
 
 
199 aa  164  5.9999999999999996e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  41.08 
 
 
197 aa  162  2.0000000000000002e-39  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  43.72 
 
 
194 aa  161  4.0000000000000004e-39  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  42.62 
 
 
194 aa  161  5.0000000000000005e-39  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  39.25 
 
 
199 aa  158  4e-38  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  39.67 
 
 
201 aa  157  6e-38  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  37.91 
 
 
206 aa  157  1e-37  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  39.56 
 
 
212 aa  157  1e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  38.38 
 
 
204 aa  157  1e-37  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  39.67 
 
 
201 aa  157  1e-37  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  36.9 
 
 
200 aa  156  2e-37  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  38.17 
 
 
199 aa  155  5.0000000000000005e-37  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  41.94 
 
 
195 aa  154  5.0000000000000005e-37  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  38.46 
 
 
207 aa  154  7e-37  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  37.5 
 
 
213 aa  154  7e-37  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  38.04 
 
 
210 aa  154  9e-37  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5687  response regulator receiver and ANTAR domain protein  37.63 
 
 
210 aa  154  9e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  38.04 
 
 
210 aa  154  9e-37  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  38.04 
 
 
210 aa  154  9e-37  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  37.91 
 
 
229 aa  152  2e-36  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  37.5 
 
 
205 aa  152  2e-36  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  38.59 
 
 
229 aa  151  7e-36  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_008578  Acel_1081  response regulator receiver/ANTAR domain-containing protein  37.02 
 
 
247 aa  150  8.999999999999999e-36  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  37.04 
 
 
214 aa  150  8.999999999999999e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_009253  Dred_1289  response regulator receiver/ANTAR domain-containing protein  41.21 
 
 
221 aa  149  2e-35  Desulfotomaculum reducens MI-1  Bacteria  normal  0.132207  n/a   
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  35.91 
 
 
198 aa  148  5e-35  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  38.92 
 
 
229 aa  147  7e-35  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  36.26 
 
 
205 aa  147  8e-35  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  37.17 
 
 
220 aa  146  2.0000000000000003e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  37.3 
 
 
206 aa  145  3e-34  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  37.5 
 
 
227 aa  144  7.0000000000000006e-34  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_011831  Cagg_2517  response regulator receiver and ANTAR domain protein  36.9 
 
 
194 aa  142  2e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  36.96 
 
 
220 aa  142  4e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  35.33 
 
 
194 aa  141  5e-33  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  37.5 
 
 
226 aa  141  6e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  37.36 
 
 
196 aa  141  6e-33  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3018  response regulator receiver  37.04 
 
 
207 aa  141  7e-33  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  39.25 
 
 
194 aa  140  8e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  36.22 
 
 
206 aa  140  8e-33  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  36.56 
 
 
196 aa  139  3e-32  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0739  putative response regulator  35.58 
 
 
261 aa  138  3.9999999999999997e-32  Bifidobacterium longum DJO10A  Bacteria  hitchhiker  0.000540248  n/a   
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  34.24 
 
 
207 aa  137  7e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_013721  HMPREF0424_0616  response regulator receiver domain protein  34.13 
 
 
249 aa  136  2e-31  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  34.62 
 
 
200 aa  135  4e-31  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  32.97 
 
 
215 aa  134  8e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  35.68 
 
 
202 aa  133  9.999999999999999e-31  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  35.16 
 
 
189 aa  133  9.999999999999999e-31  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_009483  Gura_1146  response regulator receiver/ANTAR domain-containing protein  35.68 
 
 
188 aa  131  6e-30  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  33.52 
 
 
198 aa  130  9e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_013216  Dtox_3761  response regulator receiver and ANTAR domain protein  34.24 
 
 
194 aa  130  1.0000000000000001e-29  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000015775  normal 
 
 
-
 
NC_002939  GSU2822  response regulator  35.68 
 
 
191 aa  130  2.0000000000000002e-29  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_3459  response regulator receiver/ANTAR domain-containing protein  36.41 
 
 
205 aa  127  1.0000000000000001e-28  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  32.42 
 
 
198 aa  124  6e-28  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_007498  Pcar_2091  response regulator  34.57 
 
 
187 aa  124  7e-28  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2808  response regulator receiver/ANTAR domain-containing protein  34.05 
 
 
220 aa  123  2e-27  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00041222  n/a   
 
 
-
 
NC_007644  Moth_1295  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
208 aa  120  1.9999999999999998e-26  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.153579  normal  0.0128304 
 
 
-
 
NC_010424  Daud_2028  response regulator receiver/ANTAR domain-containing protein  31.75 
 
 
192 aa  116  1.9999999999999998e-25  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000049817  n/a   
 
 
-
 
NC_013216  Dtox_3764  response regulator receiver and ANTAR domain protein  35.16 
 
 
194 aa  115  3e-25  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0425638  normal 
 
 
-
 
NC_013124  Afer_1081  response regulator receiver and ANTAR domain protein  31.31 
 
 
203 aa  113  2.0000000000000002e-24  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2177  response regulator receiver/ANTAR domain-containing protein  32.97 
 
 
190 aa  111  7.000000000000001e-24  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0297  response regulator receiver/ANTAR domain-containing protein  31.87 
 
 
195 aa  107  8.000000000000001e-23  Petrotoga mobilis SJ95  Bacteria  normal  0.719259  n/a   
 
 
-
 
NC_009654  Mmwyl1_2821  response regulator receiver/ANTAR domain-containing protein  30.05 
 
 
224 aa  102  5e-21  Marinomonas sp. MWYL1  Bacteria  normal  0.41961  normal  0.477248 
 
 
-
 
NC_009253  Dred_2811  response regulator receiver/ANTAR domain-containing protein  29.89 
 
 
191 aa  100  1e-20  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00444481  n/a   
 
 
-
 
NC_009253  Dred_2864  Fis family transcriptional regulator  32.63 
 
 
191 aa  99  3e-20  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000561884  n/a   
 
 
-
 
NC_009253  Dred_1293  response regulator receiver protein  38.4 
 
 
159 aa  95.9  3e-19  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1494  response regulator  29.03 
 
 
194 aa  95.5  5e-19  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.621557  n/a   
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  41.22 
 
 
636 aa  92.8  2e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_013235  Namu_2394  response regulator receiver and ANTAR domain protein  27.81 
 
 
218 aa  92.8  3e-18  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00108275  hitchhiker  0.000509226 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  41 
 
 
224 aa  90.5  1e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_0678  response regulator receiver and ANTAR domain protein  27.66 
 
 
243 aa  90.5  1e-17  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0588  response regulator NasT  26.34 
 
 
191 aa  90.1  2e-17  Methylococcus capsulatus str. Bath  Bacteria  normal  0.419145  n/a   
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  38.98 
 
 
230 aa  89.7  2e-17  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  34.67 
 
 
225 aa  89.7  2e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  38.14 
 
 
227 aa  89  3e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  28.57 
 
 
195 aa  88.2  6e-17  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  37.98 
 
 
667 aa  87.8  9e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  42.72 
 
 
224 aa  86.7  2e-16  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  33.54 
 
 
224 aa  86.7  2e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  42.72 
 
 
224 aa  87  2e-16  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  39.62 
 
 
228 aa  86.3  3e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2548  two component transcriptional regulator, LuxR family  39.47 
 
 
218 aa  85.9  4e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  40.35 
 
 
218 aa  85.5  4e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  38.46 
 
 
250 aa  85.5  4e-16  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  38.94 
 
 
241 aa  85.1  6e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_007298  Daro_0829  response regulator receiver:ANTAR  28.49 
 
 
191 aa  84.7  7e-16  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.018256 
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  28.43 
 
 
225 aa  84.7  8e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  40.59 
 
 
232 aa  84.3  9e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  41.75 
 
 
224 aa  84.3  0.000000000000001  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  41.75 
 
 
224 aa  84.3  0.000000000000001  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_6529  two component transcriptional regulator, LuxR family  40.2 
 
 
224 aa  84  0.000000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.270807  normal  0.114568 
 
 
-
 
NC_011884  Cyan7425_3249  two component transcriptional regulator, LuxR family  37.25 
 
 
211 aa  82.8  0.000000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.414819  normal  0.558116 
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  40.5 
 
 
352 aa  83.2  0.000000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  32.98 
 
 
221 aa  83.2  0.000000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  39 
 
 
220 aa  83.2  0.000000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  36.21 
 
 
244 aa  82.4  0.000000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
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