More than 300 homologs were found in PanDaTox collection
for query gene Sked_20250 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  100 
 
 
226 aa  442  1e-123  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  87.38 
 
 
220 aa  362  3e-99  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  88 
 
 
229 aa  346  2e-94  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  91.1 
 
 
227 aa  343  2e-93  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  87.7 
 
 
220 aa  326  2.0000000000000001e-88  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  79.68 
 
 
215 aa  306  2.0000000000000002e-82  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  73.17 
 
 
229 aa  286  1e-76  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  69.8 
 
 
201 aa  286  2e-76  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  69.31 
 
 
201 aa  285  4e-76  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  69.68 
 
 
207 aa  273  1.0000000000000001e-72  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  66.33 
 
 
204 aa  267  8e-71  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  72.68 
 
 
214 aa  266  2e-70  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  67.89 
 
 
212 aa  266  2e-70  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  65.95 
 
 
197 aa  253  2.0000000000000002e-66  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2955  response regulator  66.85 
 
 
199 aa  253  2.0000000000000002e-66  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  67.88 
 
 
198 aa  253  2.0000000000000002e-66  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  62.96 
 
 
206 aa  253  2.0000000000000002e-66  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  65.78 
 
 
200 aa  252  3e-66  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  62.43 
 
 
206 aa  252  4.0000000000000004e-66  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  63.44 
 
 
213 aa  248  8e-65  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  63.1 
 
 
205 aa  247  9e-65  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_008699  Noca_3018  response regulator receiver  70.27 
 
 
207 aa  246  2e-64  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5687  response regulator receiver and ANTAR domain protein  63.59 
 
 
210 aa  245  4e-64  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  61.83 
 
 
210 aa  245  4e-64  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  61.83 
 
 
210 aa  245  4e-64  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  62.77 
 
 
199 aa  245  4e-64  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  61.83 
 
 
210 aa  245  4e-64  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  62.9 
 
 
229 aa  245  4.9999999999999997e-64  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  61.96 
 
 
194 aa  241  9e-63  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  61.17 
 
 
199 aa  240  1e-62  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  63.59 
 
 
205 aa  238  8e-62  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1081  response regulator receiver/ANTAR domain-containing protein  64.44 
 
 
247 aa  236  2e-61  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  59.46 
 
 
207 aa  235  3e-61  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  61.83 
 
 
189 aa  234  8e-61  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  58.82 
 
 
206 aa  232  4.0000000000000004e-60  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  58.24 
 
 
200 aa  222  3e-57  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  52.97 
 
 
197 aa  211  9e-54  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  53.85 
 
 
194 aa  208  5e-53  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  54.95 
 
 
191 aa  207  1e-52  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  57.14 
 
 
195 aa  207  1e-52  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  53.85 
 
 
194 aa  205  6e-52  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_010816  BLD_0739  putative response regulator  48.21 
 
 
261 aa  195  4.0000000000000005e-49  Bifidobacterium longum DJO10A  Bacteria  hitchhiker  0.000540248  n/a   
 
 
-
 
NC_013721  HMPREF0424_0616  response regulator receiver domain protein  46.22 
 
 
249 aa  194  8.000000000000001e-49  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU2822  response regulator  45.11 
 
 
191 aa  172  3.9999999999999995e-42  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  44.02 
 
 
202 aa  168  5e-41  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_009483  Gura_1146  response regulator receiver/ANTAR domain-containing protein  44.57 
 
 
188 aa  168  5e-41  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_013124  Afer_1081  response regulator receiver and ANTAR domain protein  46.32 
 
 
203 aa  166  2.9999999999999998e-40  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  39.89 
 
 
196 aa  160  1e-38  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2517  response regulator receiver and ANTAR domain protein  43.16 
 
 
194 aa  160  1e-38  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1051  response regulator receiver and ANTAR domain protein  42.16 
 
 
192 aa  160  1e-38  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  40 
 
 
196 aa  160  1e-38  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_3761  response regulator receiver and ANTAR domain protein  42.62 
 
 
194 aa  157  1e-37  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000015775  normal 
 
 
-
 
NC_009253  Dred_1289  response regulator receiver/ANTAR domain-containing protein  45.05 
 
 
221 aa  157  1e-37  Desulfotomaculum reducens MI-1  Bacteria  normal  0.132207  n/a   
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  42.62 
 
 
194 aa  157  2e-37  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_008609  Ppro_3459  response regulator receiver/ANTAR domain-containing protein  42.93 
 
 
205 aa  155  3e-37  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2394  response regulator receiver and ANTAR domain protein  44.55 
 
 
218 aa  154  2e-36  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00108275  hitchhiker  0.000509226 
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  37.97 
 
 
198 aa  144  2e-33  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_007498  Pcar_2091  response regulator  40.76 
 
 
187 aa  143  2e-33  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2808  response regulator receiver/ANTAR domain-containing protein  40.11 
 
 
220 aa  142  4e-33  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00041222  n/a   
 
 
-
 
NC_010003  Pmob_0297  response regulator receiver/ANTAR domain-containing protein  36.61 
 
 
195 aa  142  5e-33  Petrotoga mobilis SJ95  Bacteria  normal  0.719259  n/a   
 
 
-
 
NC_008261  CPF_0888  response regulator  37.5 
 
 
191 aa  141  8e-33  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_3764  response regulator receiver and ANTAR domain protein  37.7 
 
 
194 aa  140  9.999999999999999e-33  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0425638  normal 
 
 
-
 
NC_013517  Sterm_0084  response regulator receiver and ANTAR domain protein  38.92 
 
 
242 aa  137  2e-31  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.682854  n/a   
 
 
-
 
NC_010424  Daud_2028  response regulator receiver/ANTAR domain-containing protein  39.01 
 
 
192 aa  136  3.0000000000000003e-31  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000049817  n/a   
 
 
-
 
NC_007644  Moth_1295  response regulator receiver/ANTAR domain-containing protein  38.01 
 
 
208 aa  131  1.0000000000000001e-29  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.153579  normal  0.0128304 
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  37.84 
 
 
198 aa  130  2.0000000000000002e-29  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_013235  Namu_0678  response regulator receiver and ANTAR domain protein  40.76 
 
 
243 aa  125  4.0000000000000003e-28  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_2031  response regulator receiver/ANTAR domain-containing protein  37.04 
 
 
198 aa  118  7.999999999999999e-26  Candidatus Desulforudis audaxviator MP104C  Bacteria  unclonable  0.00000000027462  n/a   
 
 
-
 
NC_010718  Nther_0963  response regulator receiver and ANTAR domain protein  32.97 
 
 
191 aa  112  5e-24  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000231614  normal 
 
 
-
 
NC_010320  Teth514_2177  response regulator receiver/ANTAR domain-containing protein  32.07 
 
 
190 aa  112  6e-24  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1293  response regulator receiver protein  41.35 
 
 
159 aa  104  1e-21  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2811  response regulator receiver/ANTAR domain-containing protein  31.02 
 
 
191 aa  103  3e-21  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00444481  n/a   
 
 
-
 
NC_002977  MCA0588  response regulator NasT  36.42 
 
 
191 aa  102  6e-21  Methylococcus capsulatus str. Bath  Bacteria  normal  0.419145  n/a   
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  41.03 
 
 
704 aa  101  7e-21  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_012850  Rleg_1632  response regulator receiver and ANTAR domain protein  33.7 
 
 
207 aa  99.4  4e-20  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0623893 
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  37.75 
 
 
636 aa  99  5e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_011369  Rleg2_1455  response regulator receiver and ANTAR domain protein  33.7 
 
 
195 aa  99  5e-20  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.770993 
 
 
-
 
NC_009253  Dred_2864  Fis family transcriptional regulator  33.33 
 
 
191 aa  98.6  6e-20  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000561884  n/a   
 
 
-
 
NC_009620  Smed_4528  response regulator receiver/ANTAR domain-containing protein  32.6 
 
 
196 aa  97.4  2e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1132  response regulator receiver/ANTAR domain-containing protein  32.53 
 
 
194 aa  95.5  6e-19  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.169793  n/a   
 
 
-
 
NC_007796  Mhun_2637  putative PAS/PAC sensor protein  37.82 
 
 
461 aa  94.4  1e-18  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_008254  Meso_1448  response regulator receiver/ANTAR domain-containing protein  31.18 
 
 
196 aa  94.7  1e-18  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2319  response regulator receiver and ANTAR domain protein  34.34 
 
 
206 aa  93.6  2e-18  Acidovorax ebreus TPSY  Bacteria  normal  0.781459  n/a   
 
 
-
 
NC_007948  Bpro_3275  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
430 aa  93.6  2e-18  Polaromonas sp. JS666  Bacteria  normal  0.197236  normal 
 
 
-
 
NC_008782  Ajs_2830  response regulator receiver/ANTAR domain-containing protein  34.34 
 
 
206 aa  93.6  2e-18  Acidovorax sp. JS42  Bacteria  normal  normal  0.264074 
 
 
-
 
NC_013522  Taci_1321  response regulator receiver protein  43.59 
 
 
120 aa  93.6  2e-18  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1813  response regulator receiver protein  37.82 
 
 
316 aa  92  6e-18  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.445517  normal  0.445863 
 
 
-
 
NC_013385  Adeg_1890  response regulator receiver and ANTAR domain protein  33.68 
 
 
197 aa  91.7  8e-18  Ammonifex degensii KC4  Bacteria  normal  0.0366782  n/a   
 
 
-
 
NC_011899  Hore_07590  response regulator receiver protein  43.36 
 
 
122 aa  91.7  9e-18  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000000535524  n/a   
 
 
-
 
NC_007484  Noc_1494  response regulator  29.12 
 
 
194 aa  91.3  1e-17  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.621557  n/a   
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  38.76 
 
 
355 aa  90.9  1e-17  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_008752  Aave_2149  response regulator receiver/ANTAR domain-containing protein  34.34 
 
 
208 aa  90.9  2e-17  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1393  putative response regulator transcription regulator protein  37.32 
 
 
210 aa  90.9  2e-17  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.40238 
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  28.31 
 
 
195 aa  90.1  3e-17  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_2645  putative PAS/PAC sensor protein  33.61 
 
 
336 aa  89.7  3e-17  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007908  Rfer_0893  response regulator receiver sensor signal transduction histidine kinase  34.67 
 
 
359 aa  89.7  3e-17  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  46.09 
 
 
219 aa  89.4  4e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013385  Adeg_2019  response regulator receiver protein  39.5 
 
 
123 aa  89.7  4e-17  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_1439  response regulator receiver domain-containing protein  38.94 
 
 
120 aa  89.4  4e-17  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  35 
 
 
352 aa  89.4  4e-17  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
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