More than 300 homologs were found in PanDaTox collection
for query gene Afer_1081 on replicon NC_013124
Organism: Acidimicrobium ferrooxidans DSM 10331



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013124  Afer_1081  response regulator receiver and ANTAR domain protein  100 
 
 
203 aa  391  1e-108  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  56.02 
 
 
204 aa  199  1.9999999999999998e-50  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  51.76 
 
 
200 aa  195  4.0000000000000005e-49  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  52.28 
 
 
199 aa  194  6e-49  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  50.76 
 
 
199 aa  190  1e-47  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  50.78 
 
 
214 aa  188  4e-47  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  52.11 
 
 
207 aa  185  4e-46  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  52.63 
 
 
206 aa  185  4e-46  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  52.36 
 
 
200 aa  184  1.0000000000000001e-45  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  49.75 
 
 
210 aa  183  1.0000000000000001e-45  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  49.75 
 
 
210 aa  183  1.0000000000000001e-45  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  51.31 
 
 
194 aa  182  2.0000000000000003e-45  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  49.75 
 
 
210 aa  183  2.0000000000000003e-45  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  51.05 
 
 
212 aa  182  4.0000000000000006e-45  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  48.99 
 
 
213 aa  182  4.0000000000000006e-45  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  49.49 
 
 
205 aa  182  4.0000000000000006e-45  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  52.11 
 
 
206 aa  181  8.000000000000001e-45  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  48 
 
 
229 aa  180  1e-44  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_013595  Sros_2955  response regulator  48.98 
 
 
199 aa  180  1e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  50.79 
 
 
197 aa  177  8e-44  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1081  response regulator receiver/ANTAR domain-containing protein  50.8 
 
 
247 aa  177  1e-43  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5687  response regulator receiver and ANTAR domain protein  49.24 
 
 
210 aa  173  9.999999999999999e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  50.26 
 
 
205 aa  173  9.999999999999999e-43  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  51.05 
 
 
198 aa  173  1.9999999999999998e-42  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  46.07 
 
 
197 aa  171  6.999999999999999e-42  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  45.26 
 
 
201 aa  171  7.999999999999999e-42  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  46.03 
 
 
206 aa  171  9e-42  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_008699  Noca_3018  response regulator receiver  53.16 
 
 
207 aa  170  1e-41  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  45.26 
 
 
201 aa  169  2e-41  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  48.99 
 
 
207 aa  169  4e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  46.32 
 
 
229 aa  168  5e-41  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  48.42 
 
 
229 aa  167  1e-40  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  47.09 
 
 
227 aa  167  1e-40  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  48.15 
 
 
220 aa  166  2e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  46.32 
 
 
226 aa  166  2.9999999999999998e-40  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  45.79 
 
 
220 aa  162  2.0000000000000002e-39  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  46.32 
 
 
189 aa  154  7e-37  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  43.09 
 
 
215 aa  152  4e-36  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  42.63 
 
 
195 aa  148  5e-35  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  42.33 
 
 
194 aa  148  5e-35  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  42.86 
 
 
194 aa  147  8e-35  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  42.63 
 
 
191 aa  146  2.0000000000000003e-34  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_010816  BLD_0739  putative response regulator  39.44 
 
 
261 aa  146  3e-34  Bifidobacterium longum DJO10A  Bacteria  hitchhiker  0.000540248  n/a   
 
 
-
 
NC_013721  HMPREF0424_0616  response regulator receiver domain protein  39.6 
 
 
249 aa  142  5e-33  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009253  Dred_1289  response regulator receiver/ANTAR domain-containing protein  38.62 
 
 
221 aa  139  3.9999999999999997e-32  Desulfotomaculum reducens MI-1  Bacteria  normal  0.132207  n/a   
 
 
-
 
NC_011831  Cagg_2517  response regulator receiver and ANTAR domain protein  39.06 
 
 
194 aa  131  5e-30  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  40.62 
 
 
194 aa  131  6.999999999999999e-30  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  37.63 
 
 
196 aa  128  7.000000000000001e-29  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_3761  response regulator receiver and ANTAR domain protein  37.77 
 
 
194 aa  126  2.0000000000000002e-28  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000015775  normal 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  37.5 
 
 
196 aa  126  2.0000000000000002e-28  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2822  response regulator  35.6 
 
 
191 aa  124  8.000000000000001e-28  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  37.11 
 
 
198 aa  124  1e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_010003  Pmob_0297  response regulator receiver/ANTAR domain-containing protein  32.8 
 
 
195 aa  123  2e-27  Petrotoga mobilis SJ95  Bacteria  normal  0.719259  n/a   
 
 
-
 
NC_009483  Gura_1146  response regulator receiver/ANTAR domain-containing protein  34.55 
 
 
188 aa  122  3e-27  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  34.57 
 
 
202 aa  122  3e-27  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_013216  Dtox_3764  response regulator receiver and ANTAR domain protein  32.98 
 
 
194 aa  122  4e-27  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0425638  normal 
 
 
-
 
NC_013517  Sterm_1051  response regulator receiver and ANTAR domain protein  34.18 
 
 
192 aa  122  4e-27  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_3459  response regulator receiver/ANTAR domain-containing protein  33.68 
 
 
205 aa  115  5e-25  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0888  response regulator  31.31 
 
 
191 aa  113  2.0000000000000002e-24  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1295  response regulator receiver/ANTAR domain-containing protein  34.21 
 
 
208 aa  111  6e-24  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.153579  normal  0.0128304 
 
 
-
 
NC_013517  Sterm_0084  response regulator receiver and ANTAR domain protein  30.15 
 
 
242 aa  108  4.0000000000000004e-23  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.682854  n/a   
 
 
-
 
NC_009253  Dred_2808  response regulator receiver/ANTAR domain-containing protein  35.08 
 
 
220 aa  108  4.0000000000000004e-23  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00041222  n/a   
 
 
-
 
NC_009253  Dred_1293  response regulator receiver protein  42.36 
 
 
159 aa  109  4.0000000000000004e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0963  response regulator receiver and ANTAR domain protein  33.16 
 
 
191 aa  107  1e-22  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000231614  normal 
 
 
-
 
NC_007498  Pcar_2091  response regulator  31.38 
 
 
187 aa  105  4e-22  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2811  response regulator receiver/ANTAR domain-containing protein  31.96 
 
 
191 aa  102  4e-21  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00444481  n/a   
 
 
-
 
NC_009253  Dred_2864  Fis family transcriptional regulator  32.82 
 
 
191 aa  101  9e-21  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000561884  n/a   
 
 
-
 
NC_010424  Daud_2028  response regulator receiver/ANTAR domain-containing protein  32.8 
 
 
192 aa  100  2e-20  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000049817  n/a   
 
 
-
 
NC_013235  Namu_2394  response regulator receiver and ANTAR domain protein  35.98 
 
 
218 aa  97.4  1e-19  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00108275  hitchhiker  0.000509226 
 
 
-
 
NC_013235  Namu_0678  response regulator receiver and ANTAR domain protein  38.83 
 
 
243 aa  96.3  3e-19  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  33.33 
 
 
198 aa  93.6  2e-18  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_007796  Mhun_3039  response regulator receiver sensor signal transduction histidine kinase  32.81 
 
 
355 aa  92.8  3e-18  Methanospirillum hungatei JF-1  Archaea  normal  0.610599  normal 
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  28.95 
 
 
195 aa  90.9  1e-17  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_2019  response regulator receiver protein  39.02 
 
 
123 aa  87.4  1e-16  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_10620  response regulator receiver protein  39.25 
 
 
122 aa  87.8  1e-16  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00212992  n/a   
 
 
-
 
NC_002977  MCA0588  response regulator NasT  31.77 
 
 
191 aa  87  2e-16  Methylococcus capsulatus str. Bath  Bacteria  normal  0.419145  n/a   
 
 
-
 
NC_011769  DvMF_2677  response regulator receiver sensor hybrid histidine kinase  43.86 
 
 
636 aa  86.7  2e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.068934 
 
 
-
 
NC_009972  Haur_0985  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  39.2 
 
 
704 aa  86.7  2e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000494124  n/a   
 
 
-
 
NC_013522  Taci_0531  response regulator receiver protein  41.38 
 
 
120 aa  85.5  4e-16  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4139  response regulator receiver/ANTAR domain-containing protein  30.05 
 
 
196 aa  85.5  5e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.214536 
 
 
-
 
NC_013757  Gobs_1641  two component transcriptional regulator, LuxR family  45.13 
 
 
201 aa  85.1  6e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0692  response regulator receiver protein  37.72 
 
 
119 aa  84.7  9e-16  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2031  response regulator receiver/ANTAR domain-containing protein  32.63 
 
 
198 aa  84.7  9e-16  Candidatus Desulforudis audaxviator MP104C  Bacteria  unclonable  0.00000000027462  n/a   
 
 
-
 
NC_008340  Mlg_2671  response regulator receiver protein  43.8 
 
 
243 aa  84.7  9e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  hitchhiker  0.000000000586434 
 
 
-
 
NC_010483  TRQ2_0228  response regulator receiver protein  37.93 
 
 
120 aa  84  0.000000000000001  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2177  response regulator receiver/ANTAR domain-containing protein  25.93 
 
 
190 aa  84.3  0.000000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  39.29 
 
 
667 aa  84.3  0.000000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0230  response regulator receiver protein  37.93 
 
 
120 aa  84  0.000000000000001  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1311  putative PAS/PAC sensor protein  39.17 
 
 
340 aa  83.6  0.000000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.187179 
 
 
-
 
NC_013131  Caci_0763  two component transcriptional regulator, LuxR family  45.13 
 
 
208 aa  82.8  0.000000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.313515 
 
 
-
 
NC_007413  Ava_0066  response regulator receiver sensor signal transduction histidine kinase  38.98 
 
 
377 aa  82.8  0.000000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.359193  normal  0.0132857 
 
 
-
 
NC_011071  Smal_3531  two component transcriptional regulator, LytTR family  47.57 
 
 
243 aa  83.2  0.000000000000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0655  two component transcriptional regulator, LuxR family  46.02 
 
 
200 aa  83.2  0.000000000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1624  two component transcriptional regulator, LuxR family  49.02 
 
 
201 aa  82.8  0.000000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0305603  n/a   
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  41.38 
 
 
225 aa  82.8  0.000000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_012034  Athe_2159  response regulator receiver protein  37.07 
 
 
120 aa  82.8  0.000000000000004  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00200925  n/a   
 
 
-
 
NC_009616  Tmel_0931  response regulator receiver protein  33.62 
 
 
120 aa  82.4  0.000000000000004  Thermosipho melanesiensis BI429  Bacteria  normal  0.252152  n/a   
 
 
-
 
NC_007952  Bxe_B1048  response regulator receiver/ANTAR domain-containing protein  30.69 
 
 
191 aa  82.4  0.000000000000005  Burkholderia xenovorans LB400  Bacteria  normal  0.192908  normal  0.77765 
 
 
-
 
NC_011898  Ccel_2113  two component transcriptional regulator, AraC family  31.58 
 
 
538 aa  82  0.000000000000006  Clostridium cellulolyticum H10  Bacteria  normal  0.141697  n/a   
 
 
-
 
NC_008781  Pnap_3600  two component transcriptional regulator  46.3 
 
 
235 aa  82  0.000000000000006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
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