More than 300 homologs were found in PanDaTox collection
for query gene Dred_1293 on replicon NC_009253
Organism: Desulfotomaculum reducens MI-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009253  Dred_1293  response regulator receiver protein  100 
 
 
159 aa  318  1.9999999999999998e-86  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  50.36 
 
 
195 aa  142  2e-33  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  50.71 
 
 
191 aa  137  4.999999999999999e-32  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  51.06 
 
 
194 aa  137  7.999999999999999e-32  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  49.29 
 
 
194 aa  137  8.999999999999999e-32  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  42.45 
 
 
197 aa  127  6e-29  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  49.59 
 
 
198 aa  124  7e-28  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  44.44 
 
 
197 aa  122  2e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  44.44 
 
 
207 aa  121  3e-27  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  42.55 
 
 
199 aa  121  3e-27  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  42.55 
 
 
199 aa  120  8e-27  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  43.48 
 
 
200 aa  120  8e-27  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  41.48 
 
 
201 aa  119  9.999999999999999e-27  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_008578  Acel_1081  response regulator receiver/ANTAR domain-containing protein  45.86 
 
 
247 aa  119  9.999999999999999e-27  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  43.7 
 
 
214 aa  119  1.9999999999999998e-26  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  42.96 
 
 
200 aa  119  1.9999999999999998e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5687  response regulator receiver and ANTAR domain protein  45.6 
 
 
210 aa  118  3e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  41.48 
 
 
201 aa  118  3e-26  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  42.96 
 
 
204 aa  117  4.9999999999999996e-26  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  42.54 
 
 
189 aa  117  4.9999999999999996e-26  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  41.48 
 
 
210 aa  117  6e-26  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  41.48 
 
 
210 aa  117  6e-26  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  41.48 
 
 
210 aa  117  6e-26  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  42.96 
 
 
212 aa  117  7e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  46.83 
 
 
206 aa  117  7.999999999999999e-26  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  42.96 
 
 
206 aa  116  9.999999999999999e-26  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_009253  Dred_1289  response regulator receiver/ANTAR domain-containing protein  39.04 
 
 
221 aa  116  9.999999999999999e-26  Desulfotomaculum reducens MI-1  Bacteria  normal  0.132207  n/a   
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  41.48 
 
 
229 aa  116  9.999999999999999e-26  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  42.45 
 
 
194 aa  116  9.999999999999999e-26  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  43.85 
 
 
213 aa  115  1.9999999999999998e-25  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  45.38 
 
 
194 aa  115  3e-25  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  42.96 
 
 
206 aa  115  3e-25  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  42.52 
 
 
229 aa  115  3e-25  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_010816  BLD_0739  putative response regulator  42.14 
 
 
261 aa  114  6e-25  Bifidobacterium longum DJO10A  Bacteria  hitchhiker  0.000540248  n/a   
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  43.17 
 
 
196 aa  114  6e-25  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  43.17 
 
 
196 aa  114  6.9999999999999995e-25  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2955  response regulator  42.14 
 
 
199 aa  114  7.999999999999999e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  43.61 
 
 
227 aa  112  2.0000000000000002e-24  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  42.22 
 
 
207 aa  112  2.0000000000000002e-24  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  42.11 
 
 
229 aa  112  2.0000000000000002e-24  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  40.74 
 
 
205 aa  112  2.0000000000000002e-24  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  43.61 
 
 
220 aa  112  3e-24  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  39.85 
 
 
220 aa  111  4.0000000000000004e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0616  response regulator receiver domain protein  41.86 
 
 
249 aa  110  5e-24  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  40.74 
 
 
205 aa  110  7.000000000000001e-24  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  40.88 
 
 
198 aa  108  2.0000000000000002e-23  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_013124  Afer_1081  response regulator receiver and ANTAR domain protein  42.36 
 
 
203 aa  109  2.0000000000000002e-23  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0297  response regulator receiver/ANTAR domain-containing protein  41.01 
 
 
195 aa  108  3e-23  Petrotoga mobilis SJ95  Bacteria  normal  0.719259  n/a   
 
 
-
 
NC_008699  Noca_3018  response regulator receiver  45.19 
 
 
207 aa  108  4.0000000000000004e-23  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  40.46 
 
 
215 aa  105  3e-22  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  40.74 
 
 
226 aa  104  4e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_013517  Sterm_1051  response regulator receiver and ANTAR domain protein  38.24 
 
 
192 aa  103  8e-22  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0084  response regulator receiver and ANTAR domain protein  40.3 
 
 
242 aa  99  2e-20  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.682854  n/a   
 
 
-
 
NC_013216  Dtox_3764  response regulator receiver and ANTAR domain protein  36.17 
 
 
194 aa  98.2  4e-20  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0425638  normal 
 
 
-
 
NC_011831  Cagg_2517  response regulator receiver and ANTAR domain protein  36.3 
 
 
194 aa  97.8  6e-20  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0888  response regulator  38.4 
 
 
191 aa  95.9  2e-19  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2282  histidine kinase  33.58 
 
 
667 aa  88.6  3e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1146  response regulator receiver/ANTAR domain-containing protein  35.82 
 
 
188 aa  88.2  4e-17  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_002939  GSU2822  response regulator  35.07 
 
 
191 aa  85.5  2e-16  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  41.75 
 
 
224 aa  86.3  2e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013216  Dtox_3761  response regulator receiver and ANTAR domain protein  31.69 
 
 
194 aa  86.3  2e-16  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000015775  normal 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  34.16 
 
 
217 aa  84.7  4e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_008609  Ppro_3459  response regulator receiver/ANTAR domain-containing protein  38.06 
 
 
205 aa  84.7  5e-16  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_10620  response regulator receiver protein  38.26 
 
 
122 aa  84  8e-16  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00212992  n/a   
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  36.96 
 
 
202 aa  83.6  9e-16  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  36.13 
 
 
225 aa  83.6  9e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  40.38 
 
 
218 aa  83.2  0.000000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008699  Noca_2635  response regulator receiver  38.32 
 
 
207 aa  83.6  0.000000000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1738  response regulator receiver protein  37.5 
 
 
122 aa  82.8  0.000000000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  40 
 
 
225 aa  82.8  0.000000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_008148  Rxyl_2511  two component LuxR family transcriptional regulator  35.65 
 
 
229 aa  82.8  0.000000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_0248  response regulator receiver modulated CheB methylesterase  34.9 
 
 
358 aa  82.4  0.000000000000002  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.185703  normal  0.030578 
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  39.5 
 
 
212 aa  82  0.000000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2808  response regulator receiver/ANTAR domain-containing protein  32.85 
 
 
220 aa  82  0.000000000000003  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00041222  n/a   
 
 
-
 
NC_011884  Cyan7425_3249  two component transcriptional regulator, LuxR family  38.71 
 
 
211 aa  81.6  0.000000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  0.414819  normal  0.558116 
 
 
-
 
NC_007912  Sde_0480  response regulator receiver domain-containing protein  36.89 
 
 
265 aa  81.6  0.000000000000004  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  41.82 
 
 
215 aa  81.6  0.000000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3359  two component transcriptional regulator, LuxR family  35.26 
 
 
219 aa  81.3  0.000000000000005  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00321115  hitchhiker  0.000132937 
 
 
-
 
NC_007908  Rfer_0895  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32 
 
 
701 aa  81.3  0.000000000000005  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1321  response regulator receiver protein  40.2 
 
 
120 aa  80.9  0.000000000000006  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  29.37 
 
 
198 aa  80.9  0.000000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_007644  Moth_1295  response regulator receiver/ANTAR domain-containing protein  33.09 
 
 
208 aa  80.9  0.000000000000006  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.153579  normal  0.0128304 
 
 
-
 
NC_012034  Athe_1885  response regulator receiver protein  33.1 
 
 
1066 aa  80.9  0.000000000000006  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.166704  n/a   
 
 
-
 
NC_013385  Adeg_2019  response regulator receiver protein  37.29 
 
 
123 aa  80.9  0.000000000000006  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  43.9 
 
 
206 aa  80.9  0.000000000000007  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  38.14 
 
 
230 aa  80.5  0.000000000000008  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_013525  Tter_0641  two component transcriptional regulator, LuxR family  39.47 
 
 
1648 aa  80.5  0.000000000000008  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007796  Mhun_1724  response regulator receiver domain-containing protein  39.29 
 
 
352 aa  80.5  0.000000000000009  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  37.93 
 
 
217 aa  80.1  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_2382  response regulator receiver protein  35.59 
 
 
122 aa  80.1  0.00000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_5079  two component transcriptional regulator, LuxR family  43.59 
 
 
217 aa  79.3  0.00000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.525358 
 
 
-
 
NC_013385  Adeg_1040  response regulator receiver protein  38.84 
 
 
391 aa  79.7  0.00000000000002  Ammonifex degensii KC4  Bacteria  normal  0.369353  n/a   
 
 
-
 
NC_009712  Mboo_1497  putative PAS/PAC sensor protein  35 
 
 
380 aa  79.3  0.00000000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.506851  normal  0.137069 
 
 
-
 
NC_011662  Tmz1t_2855  two component transcriptional regulator, LuxR family  37.5 
 
 
217 aa  79.7  0.00000000000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0277  response regulator receiver protein  39.32 
 
 
214 aa  79  0.00000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0355  response regulator receiver protein  38.24 
 
 
234 aa  78.6  0.00000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  32.33 
 
 
234 aa  78.2  0.00000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_011899  Hore_07590  response regulator receiver protein  38.68 
 
 
122 aa  78.2  0.00000000000004  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000000535524  n/a   
 
 
-
 
NC_007484  Noc_1494  response regulator  33.81 
 
 
194 aa  78.2  0.00000000000005  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.621557  n/a   
 
 
-
 
NC_010501  PputW619_1643  two component LuxR family transcriptional regulator  37.39 
 
 
219 aa  77.8  0.00000000000005  Pseudomonas putida W619  Bacteria  normal  0.118638  normal 
 
 
-
 
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