228 homologs were found in PanDaTox collection
for query gene Namu_0678 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013235  Namu_0678  response regulator receiver and ANTAR domain protein  100 
 
 
243 aa  466  9.999999999999999e-131  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2394  response regulator receiver and ANTAR domain protein  53 
 
 
218 aa  204  9e-52  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00108275  hitchhiker  0.000509226 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  46.81 
 
 
204 aa  162  5.0000000000000005e-39  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  49.19 
 
 
194 aa  162  6e-39  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  43.22 
 
 
210 aa  150  2e-35  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  43.22 
 
 
210 aa  150  2e-35  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  43.48 
 
 
210 aa  150  2e-35  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  45.41 
 
 
207 aa  147  2.0000000000000003e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  42.25 
 
 
200 aa  144  2e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  43.33 
 
 
207 aa  141  8e-33  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  42.05 
 
 
206 aa  141  9e-33  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  42.93 
 
 
229 aa  141  9.999999999999999e-33  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  43.72 
 
 
205 aa  140  3e-32  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  41.24 
 
 
199 aa  138  7e-32  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  41.18 
 
 
213 aa  138  7.999999999999999e-32  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  42.05 
 
 
206 aa  138  7.999999999999999e-32  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  43.55 
 
 
200 aa  137  1e-31  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5687  response regulator receiver and ANTAR domain protein  41.4 
 
 
210 aa  137  2e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  40.21 
 
 
199 aa  135  7.000000000000001e-31  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  43.32 
 
 
205 aa  134  9.999999999999999e-31  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  39.89 
 
 
197 aa  134  9.999999999999999e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  42.25 
 
 
227 aa  134  9.999999999999999e-31  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  40.64 
 
 
214 aa  134  9.999999999999999e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  39.57 
 
 
212 aa  134  1.9999999999999998e-30  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2955  response regulator  40.98 
 
 
199 aa  131  1.0000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  40.54 
 
 
220 aa  128  6e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  39.44 
 
 
229 aa  128  8.000000000000001e-29  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  42.33 
 
 
198 aa  127  1.0000000000000001e-28  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_008699  Noca_3018  response regulator receiver  43.72 
 
 
207 aa  127  1.0000000000000001e-28  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  40.68 
 
 
206 aa  128  1.0000000000000001e-28  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  40.76 
 
 
226 aa  126  3e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  38.3 
 
 
215 aa  125  5e-28  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  35.53 
 
 
201 aa  125  5e-28  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_008578  Acel_1081  response regulator receiver/ANTAR domain-containing protein  41.67 
 
 
247 aa  125  5e-28  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  40.54 
 
 
220 aa  125  6e-28  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  38.92 
 
 
229 aa  125  7e-28  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  37.84 
 
 
197 aa  124  9e-28  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  35.94 
 
 
201 aa  124  1e-27  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  36.46 
 
 
194 aa  116  3e-25  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0588  response regulator NasT  35.91 
 
 
191 aa  116  3.9999999999999997e-25  Methylococcus capsulatus str. Bath  Bacteria  normal  0.419145  n/a   
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  37.84 
 
 
195 aa  116  3.9999999999999997e-25  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_013721  HMPREF0424_0616  response regulator receiver domain protein  31.84 
 
 
249 aa  114  1.0000000000000001e-24  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  35.48 
 
 
191 aa  113  3e-24  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  35.91 
 
 
194 aa  111  1.0000000000000001e-23  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_010816  BLD_0739  putative response regulator  32.86 
 
 
261 aa  107  2e-22  Bifidobacterium longum DJO10A  Bacteria  hitchhiker  0.000540248  n/a   
 
 
-
 
NC_002939  GSU2822  response regulator  35.68 
 
 
191 aa  106  3e-22  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  38.38 
 
 
189 aa  104  1e-21  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  35.87 
 
 
202 aa  103  2e-21  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_010424  Daud_2028  response regulator receiver/ANTAR domain-containing protein  36.11 
 
 
192 aa  103  4e-21  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000049817  n/a   
 
 
-
 
NC_013216  Dtox_3761  response regulator receiver and ANTAR domain protein  30.56 
 
 
194 aa  101  1e-20  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000015775  normal 
 
 
-
 
NC_009654  Mmwyl1_2821  response regulator receiver/ANTAR domain-containing protein  31.58 
 
 
224 aa  100  2e-20  Marinomonas sp. MWYL1  Bacteria  normal  0.41961  normal  0.477248 
 
 
-
 
NC_009253  Dred_2808  response regulator receiver/ANTAR domain-containing protein  36.02 
 
 
220 aa  98.2  1e-19  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00041222  n/a   
 
 
-
 
NC_013124  Afer_1081  response regulator receiver and ANTAR domain protein  38.83 
 
 
203 aa  96.3  4e-19  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_3764  response regulator receiver and ANTAR domain protein  32.92 
 
 
194 aa  94.4  1e-18  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0425638  normal 
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  30.85 
 
 
195 aa  94.4  1e-18  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2517  response regulator receiver and ANTAR domain protein  35.56 
 
 
194 aa  94.4  2e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1295  response regulator receiver/ANTAR domain-containing protein  33.14 
 
 
208 aa  93.2  3e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.153579  normal  0.0128304 
 
 
-
 
NC_007498  Pcar_2091  response regulator  31.69 
 
 
187 aa  90.9  2e-17  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0888  response regulator  27.66 
 
 
191 aa  90.5  2e-17  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1146  response regulator receiver/ANTAR domain-containing protein  33.7 
 
 
188 aa  89.7  4e-17  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_008254  Meso_1448  response regulator receiver/ANTAR domain-containing protein  32.26 
 
 
196 aa  89.4  5e-17  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1090  response regulator NasT  34.09 
 
 
198 aa  87.4  2e-16  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0864919  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0246  response regulator NasT  34.09 
 
 
198 aa  87.4  2e-16  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0087  response regulator/ANTAR domain-containing protein  34.09 
 
 
198 aa  87.4  2e-16  Burkholderia mallei SAVP1  Bacteria  normal  0.792302  n/a   
 
 
-
 
NC_008835  BMA10229_0333  response regulator NasT  34.09 
 
 
198 aa  87.4  2e-16  Burkholderia mallei NCTC 10229  Bacteria  normal  0.169956  n/a   
 
 
-
 
NC_009075  BURPS668_A1759  response regulator/ANTAR domain-containing protein  34.09 
 
 
198 aa  87.4  2e-16  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1670  response regulator/ANTAR domain-containing protein  34.09 
 
 
198 aa  87.4  2e-16  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1255  response regulator/ANTAR domain-containing protein  34.09 
 
 
198 aa  87.4  2e-16  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0422038  n/a   
 
 
-
 
NC_012560  Avin_23450  response regulator NasT  32.8 
 
 
192 aa  87.8  2e-16  Azotobacter vinelandii DJ  Bacteria  normal  0.212044  n/a   
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  34.15 
 
 
198 aa  86.3  4e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_008609  Ppro_3459  response regulator receiver/ANTAR domain-containing protein  30.6 
 
 
205 aa  86.3  4e-16  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4403  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
198 aa  85.9  6e-16  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.155669 
 
 
-
 
NC_010172  Mext_4498  ANTAR domain-containing protein  30.61 
 
 
195 aa  85.1  9e-16  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3519  hypothetical protein  31.35 
 
 
192 aa  84.3  0.000000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4961  response regulator receiver and ANTAR domain protein  30.61 
 
 
195 aa  84.7  0.000000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.044252 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  32.5 
 
 
196 aa  84.7  0.000000000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3940  response regulator receiver/ANTAR domain-containing protein  33.33 
 
 
198 aa  84.3  0.000000000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.590133  normal 
 
 
-
 
NC_011004  Rpal_4227  response regulator receiver and ANTAR domain protein  32.04 
 
 
194 aa  84.3  0.000000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0711042  n/a   
 
 
-
 
NC_009720  Xaut_1086  response regulator receiver/ANTAR domain-containing protein  30.05 
 
 
202 aa  84  0.000000000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4144  response regulator receiver/ANTAR domain-containing protein  33.88 
 
 
201 aa  84  0.000000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.071014 
 
 
-
 
NC_011894  Mnod_2871  response regulator receiver and ANTAR domain protein  34.51 
 
 
204 aa  84  0.000000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.372726  n/a   
 
 
-
 
NC_008463  PA14_41490  hypothetical protein  32.8 
 
 
192 aa  84.3  0.000000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4455  response regulator receiver/ANTAR domain-containing protein  34.22 
 
 
196 aa  84  0.000000000000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.269789  normal 
 
 
-
 
NC_009485  BBta_4139  response regulator receiver/ANTAR domain-containing protein  32.09 
 
 
196 aa  84.3  0.000000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.214536 
 
 
-
 
NC_007404  Tbd_2271  response regulator receiver domain-containing protein  33.33 
 
 
188 aa  83.6  0.000000000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.187486  normal 
 
 
-
 
NC_010515  Bcenmc03_5794  response regulator receiver/ANTAR domain-containing protein  34.22 
 
 
198 aa  83.6  0.000000000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3768  response regulator receiver and ANTAR domain protein  31.11 
 
 
195 aa  82.8  0.000000000000004  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008061  Bcen_3858  response regulator receiver/ANTAR domain-containing protein  34.22 
 
 
219 aa  82.8  0.000000000000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.853052  n/a   
 
 
-
 
NC_008543  Bcen2424_4510  response regulator receiver/ANTAR domain-containing protein  34.22 
 
 
219 aa  82.8  0.000000000000004  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.000166869  normal 
 
 
-
 
NC_009253  Dred_1289  response regulator receiver/ANTAR domain-containing protein  30.37 
 
 
221 aa  83.2  0.000000000000004  Desulfotomaculum reducens MI-1  Bacteria  normal  0.132207  n/a   
 
 
-
 
NC_009720  Xaut_2506  response regulator receiver/ANTAR domain-containing protein  32.43 
 
 
221 aa  82.8  0.000000000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  0.187461  normal 
 
 
-
 
NC_010725  Mpop_5014  response regulator receiver and ANTAR domain protein  31.72 
 
 
195 aa  82.8  0.000000000000005  Methylobacterium populi BJ001  Bacteria  normal  normal  0.757534 
 
 
-
 
NC_010623  Bphy_3445  response regulator receiver/ANTAR domain-containing protein  33.16 
 
 
191 aa  82.8  0.000000000000005  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2319  response regulator receiver and ANTAR domain protein  35.37 
 
 
206 aa  82  0.000000000000007  Acidovorax ebreus TPSY  Bacteria  normal  0.781459  n/a   
 
 
-
 
NC_008782  Ajs_2830  response regulator receiver/ANTAR domain-containing protein  35.37 
 
 
206 aa  82  0.000000000000007  Acidovorax sp. JS42  Bacteria  normal  normal  0.264074 
 
 
-
 
NC_009620  Smed_4528  response regulator receiver/ANTAR domain-containing protein  29.12 
 
 
196 aa  81.6  0.000000000000009  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2306  response regulator NasT  33.14 
 
 
191 aa  81.3  0.00000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1455  response regulator receiver and ANTAR domain protein  34.06 
 
 
195 aa  81.6  0.00000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.770993 
 
 
-
 
NC_007952  Bxe_B1048  response regulator receiver/ANTAR domain-containing protein  33.68 
 
 
191 aa  81.6  0.00000000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.192908  normal  0.77765 
 
 
-
 
NC_008825  Mpe_A1393  putative response regulator transcription regulator protein  36.02 
 
 
210 aa  81.3  0.00000000000001  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.40238 
 
 
-
 
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