208 homologs were found in PanDaTox collection
for query gene Rpic12D_0259 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012856  Rpic12D_0259  response regulator receiver and ANTAR domain protein  100 
 
 
212 aa  423  1e-118  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0238  response regulator receiver and ANTAR domain protein  99.53 
 
 
212 aa  422  1e-117  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0382  response regulator transcription regulator protein  92.78 
 
 
195 aa  362  2e-99  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.846144 
 
 
-
 
NC_007973  Rmet_0278  response regulator receiver/ANTAR domain-containing protein  71.2 
 
 
219 aa  279  3e-74  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0331  response regulator receiver:ANTAR  69.11 
 
 
214 aa  273  2.0000000000000002e-72  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1393  putative response regulator transcription regulator protein  55.29 
 
 
210 aa  191  6e-48  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.40238 
 
 
-
 
NC_008752  Aave_2149  response regulator receiver/ANTAR domain-containing protein  55.62 
 
 
208 aa  191  8e-48  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2319  response regulator receiver and ANTAR domain protein  53.85 
 
 
206 aa  187  1e-46  Acidovorax ebreus TPSY  Bacteria  normal  0.781459  n/a   
 
 
-
 
NC_008782  Ajs_2830  response regulator receiver/ANTAR domain-containing protein  53.85 
 
 
206 aa  187  1e-46  Acidovorax sp. JS42  Bacteria  normal  normal  0.264074 
 
 
-
 
NC_007948  Bpro_3266  response regulator receiver/ANTAR domain-containing protein  53.53 
 
 
210 aa  186  3e-46  Polaromonas sp. JS666  Bacteria  normal  0.559806  normal 
 
 
-
 
NC_008781  Pnap_1415  response regulator receiver/ANTAR domain-containing protein  52.94 
 
 
210 aa  185  5e-46  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.609776  normal  0.778661 
 
 
-
 
NC_007908  Rfer_2553  response regulator receiver/ANTAR domain-containing protein  51.41 
 
 
215 aa  182  3e-45  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2589  Fis family transcriptional regulator  54.17 
 
 
208 aa  178  4.999999999999999e-44  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0488842 
 
 
-
 
NC_008463  PA14_41490  hypothetical protein  42.61 
 
 
192 aa  154  1e-36  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_23450  response regulator NasT  42.25 
 
 
192 aa  152  2.9999999999999998e-36  Azotobacter vinelandii DJ  Bacteria  normal  0.212044  n/a   
 
 
-
 
NC_009656  PSPA7_3519  hypothetical protein  40 
 
 
192 aa  152  4e-36  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2104  response regulator receiver:ANTAR  41.18 
 
 
191 aa  149  3e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00575971 
 
 
-
 
NC_002947  PP_2093  response regulator receiver and ANTAR domain protein  42.25 
 
 
191 aa  149  4e-35  Pseudomonas putida KT2440  Bacteria  normal  0.966349  normal  0.0833699 
 
 
-
 
NC_007492  Pfl01_1784  response regulator receiver  40.64 
 
 
191 aa  149  4e-35  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3647  response regulator receiver/ANTAR domain-containing protein  42.25 
 
 
191 aa  149  4e-35  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2271  response regulator receiver domain-containing protein  41.71 
 
 
188 aa  148  5e-35  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.187486  normal 
 
 
-
 
NC_004578  PSPTO_2306  response regulator NasT  40.64 
 
 
191 aa  148  7e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2581  response regulator receiver/ANTAR domain-containing protein  40.11 
 
 
192 aa  148  7e-35  Pseudomonas mendocina ymp  Bacteria  normal  0.298585  hitchhiker  0.00648362 
 
 
-
 
NC_009654  Mmwyl1_2821  response regulator receiver/ANTAR domain-containing protein  44.32 
 
 
224 aa  147  1.0000000000000001e-34  Marinomonas sp. MWYL1  Bacteria  normal  0.41961  normal  0.477248 
 
 
-
 
NC_010322  PputGB1_1604  response regulator receiver/ANTAR domain-containing protein  41.71 
 
 
191 aa  147  2.0000000000000003e-34  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0284464 
 
 
-
 
NC_010501  PputW619_1611  response regulator receiver/ANTAR domain-containing protein  42.25 
 
 
191 aa  146  3e-34  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000000101988 
 
 
-
 
NC_009952  Dshi_1661  transcription antitermination regulatory protein  40.96 
 
 
194 aa  139  1.9999999999999998e-32  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.00275655 
 
 
-
 
NC_006349  BMAA1090  response regulator NasT  39.06 
 
 
198 aa  138  4.999999999999999e-32  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0864919  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0246  response regulator NasT  39.06 
 
 
198 aa  138  4.999999999999999e-32  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0087  response regulator/ANTAR domain-containing protein  39.06 
 
 
198 aa  138  4.999999999999999e-32  Burkholderia mallei SAVP1  Bacteria  normal  0.792302  n/a   
 
 
-
 
NC_008835  BMA10229_0333  response regulator NasT  39.06 
 
 
198 aa  138  4.999999999999999e-32  Burkholderia mallei NCTC 10229  Bacteria  normal  0.169956  n/a   
 
 
-
 
NC_009075  BURPS668_A1759  response regulator/ANTAR domain-containing protein  39.06 
 
 
198 aa  138  4.999999999999999e-32  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1670  response regulator/ANTAR domain-containing protein  39.06 
 
 
198 aa  138  4.999999999999999e-32  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1255  response regulator/ANTAR domain-containing protein  39.06 
 
 
198 aa  138  4.999999999999999e-32  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0422038  n/a   
 
 
-
 
NC_007650  BTH_II1167  response regulator NasT  38.07 
 
 
198 aa  137  7.999999999999999e-32  Burkholderia thailandensis E264  Bacteria  normal  0.136185  n/a   
 
 
-
 
NC_002977  MCA0588  response regulator NasT  42.77 
 
 
191 aa  137  8.999999999999999e-32  Methylococcus capsulatus str. Bath  Bacteria  normal  0.419145  n/a   
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  35.35 
 
 
195 aa  137  1e-31  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1455  response regulator receiver and ANTAR domain protein  42.7 
 
 
195 aa  136  3.0000000000000003e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.770993 
 
 
-
 
NC_012850  Rleg_1632  response regulator receiver and ANTAR domain protein  44.13 
 
 
207 aa  135  4e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0623893 
 
 
-
 
NC_007298  Daro_0829  response regulator receiver:ANTAR  40.59 
 
 
191 aa  135  5e-31  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.018256 
 
 
-
 
NC_010086  Bmul_4144  response regulator receiver/ANTAR domain-containing protein  39.89 
 
 
201 aa  135  6.0000000000000005e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.071014 
 
 
-
 
NC_011988  Avi_5900  two component response regulator  42.13 
 
 
195 aa  134  7.000000000000001e-31  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_5014  response regulator receiver and ANTAR domain protein  39.88 
 
 
195 aa  134  8e-31  Methylobacterium populi BJ001  Bacteria  normal  normal  0.757534 
 
 
-
 
NC_007925  RPC_1211  response regulator receiver/ANTAR domain-containing protein  38.1 
 
 
194 aa  133  1.9999999999999998e-30  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1340  response regulator receiver/ANTAR domain-containing protein  42.57 
 
 
198 aa  132  3e-30  Burkholderia sp. 383  Bacteria  normal  normal  0.579049 
 
 
-
 
NC_011757  Mchl_4961  response regulator receiver and ANTAR domain protein  38.37 
 
 
195 aa  131  6e-30  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.044252 
 
 
-
 
NC_010505  Mrad2831_2302  response regulator receiver/ANTAR domain-containing protein  39.05 
 
 
195 aa  131  6e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.874561 
 
 
-
 
NC_009620  Smed_4528  response regulator receiver/ANTAR domain-containing protein  42.46 
 
 
196 aa  131  6e-30  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4498  ANTAR domain-containing protein  38.37 
 
 
195 aa  131  7.999999999999999e-30  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3317  putative response regulator NasT  38.6 
 
 
201 aa  131  1.0000000000000001e-29  Colwellia psychrerythraea 34H  Bacteria  normal  0.0234612  n/a   
 
 
-
 
NC_010515  Bcenmc03_5794  response regulator receiver/ANTAR domain-containing protein  42.57 
 
 
198 aa  130  1.0000000000000001e-29  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3858  response regulator receiver/ANTAR domain-containing protein  42.57 
 
 
219 aa  130  1.0000000000000001e-29  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.853052  n/a   
 
 
-
 
NC_008543  Bcen2424_4510  response regulator receiver/ANTAR domain-containing protein  42.57 
 
 
219 aa  130  1.0000000000000001e-29  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.000166869  normal 
 
 
-
 
NC_010338  Caul_2959  response regulator receiver/ANTAR domain-containing protein  47.83 
 
 
192 aa  130  1.0000000000000001e-29  Caulobacter sp. K31  Bacteria  normal  normal  0.793007 
 
 
-
 
NC_008391  Bamb_3940  response regulator receiver/ANTAR domain-containing protein  43.24 
 
 
198 aa  129  2.0000000000000002e-29  Burkholderia ambifaria AMMD  Bacteria  normal  0.590133  normal 
 
 
-
 
NC_009720  Xaut_2506  response regulator receiver/ANTAR domain-containing protein  36.1 
 
 
221 aa  129  2.0000000000000002e-29  Xanthobacter autotrophicus Py2  Bacteria  normal  0.187461  normal 
 
 
-
 
NC_010552  BamMC406_4403  response regulator receiver/ANTAR domain-containing protein  39.6 
 
 
198 aa  129  3e-29  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.155669 
 
 
-
 
NC_010623  Bphy_3445  response regulator receiver/ANTAR domain-containing protein  36.84 
 
 
191 aa  127  1.0000000000000001e-28  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1448  response regulator receiver/ANTAR domain-containing protein  36.52 
 
 
196 aa  126  2.0000000000000002e-28  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4455  response regulator receiver/ANTAR domain-containing protein  40 
 
 
196 aa  126  2.0000000000000002e-28  Paracoccus denitrificans PD1222  Bacteria  normal  0.269789  normal 
 
 
-
 
NC_011004  Rpal_4227  response regulator receiver and ANTAR domain protein  37.87 
 
 
194 aa  126  3e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0711042  n/a   
 
 
-
 
NC_009485  BBta_4139  response regulator receiver/ANTAR domain-containing protein  37.64 
 
 
196 aa  125  5e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.214536 
 
 
-
 
NC_007952  Bxe_B1048  response regulator receiver/ANTAR domain-containing protein  37.37 
 
 
191 aa  124  7e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.192908  normal  0.77765 
 
 
-
 
NC_007778  RPB_1762  response regulator receiver/ANTAR domain-containing protein  38.46 
 
 
194 aa  124  1e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.48447  normal  0.0125916 
 
 
-
 
NC_010676  Bphyt_5673  response regulator receiver and ANTAR domain protein  36.32 
 
 
191 aa  123  3e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.598594 
 
 
-
 
NC_009720  Xaut_1086  response regulator receiver/ANTAR domain-containing protein  37.08 
 
 
202 aa  122  4e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1703  response regulator receiver/ANTAR domain-containing protein  36.36 
 
 
193 aa  119  1.9999999999999998e-26  Sphingomonas wittichii RW1  Bacteria  normal  0.242071  normal 
 
 
-
 
NC_010511  M446_3741  response regulator receiver/ANTAR domain-containing protein  39.46 
 
 
202 aa  118  6e-26  Methylobacterium sp. 4-46  Bacteria  normal  0.755024  normal  0.109153 
 
 
-
 
NC_008048  Sala_1262  response regulator receiver/ANTAR domain-containing protein  38.2 
 
 
193 aa  117  9e-26  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.425993  normal 
 
 
-
 
NC_008228  Patl_2529  response regulator receiver/ANTAR domain-containing protein  35.84 
 
 
212 aa  117  9e-26  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3038  response regulator receiver/ANTAR domain-containing protein  39.46 
 
 
206 aa  117  9.999999999999999e-26  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2871  response regulator receiver and ANTAR domain protein  37.41 
 
 
204 aa  116  1.9999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.372726  n/a   
 
 
-
 
NC_007963  Csal_1132  response regulator receiver/ANTAR domain-containing protein  36.36 
 
 
194 aa  111  8.000000000000001e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.169793  n/a   
 
 
-
 
NC_011666  Msil_3768  response regulator receiver and ANTAR domain protein  35.2 
 
 
195 aa  109  3e-23  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007794  Saro_2973  response regulator receiver/ANTAR domain-containing protein  32.66 
 
 
217 aa  108  4.0000000000000004e-23  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3275  response regulator receiver/ANTAR domain-containing protein  38.41 
 
 
430 aa  108  4.0000000000000004e-23  Polaromonas sp. JS666  Bacteria  normal  0.197236  normal 
 
 
-
 
NC_007520  Tcr_0769  response regulator receiver/ANTAR domain-containing protein  29.48 
 
 
214 aa  99.8  2e-20  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0679202  n/a   
 
 
-
 
NC_010524  Lcho_2675  response regulator receiver/ANTAR domain-containing protein  33.09 
 
 
383 aa  95.9  4e-19  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  33.85 
 
 
198 aa  93.2  3e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_010581  Bind_1968  response regulator receiver/ANTAR domain-containing protein  37.5 
 
 
193 aa  87.8  1e-16  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  31.58 
 
 
196 aa  87.4  1e-16  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  36.23 
 
 
198 aa  87  2e-16  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_008825  Mpe_A2314  response regulator  29.34 
 
 
426 aa  85.5  5e-16  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  31.9 
 
 
220 aa  84.7  0.000000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0297  response regulator receiver/ANTAR domain-containing protein  30.18 
 
 
195 aa  84.3  0.000000000000001  Petrotoga mobilis SJ95  Bacteria  normal  0.719259  n/a   
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  31.05 
 
 
196 aa  84.3  0.000000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  34.93 
 
 
189 aa  82  0.000000000000006  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  32.2 
 
 
206 aa  81.3  0.00000000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_013216  Dtox_3764  response regulator receiver and ANTAR domain protein  29.28 
 
 
194 aa  80.5  0.00000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0425638  normal 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  32.18 
 
 
204 aa  80.1  0.00000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  31.71 
 
 
197 aa  79.7  0.00000000000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  27.98 
 
 
194 aa  78.6  0.00000000000007  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  29.59 
 
 
195 aa  78.2  0.00000000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  31.47 
 
 
229 aa  78.2  0.00000000000009  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  33.16 
 
 
207 aa  77.8  0.0000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  31.58 
 
 
194 aa  77.8  0.0000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_013216  Dtox_3761  response regulator receiver and ANTAR domain protein  28.75 
 
 
194 aa  77.4  0.0000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000015775  normal 
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  29.23 
 
 
201 aa  77  0.0000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  29.74 
 
 
201 aa  77  0.0000000000002  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  28.9 
 
 
194 aa  76.6  0.0000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
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