213 homologs were found in PanDaTox collection
for query gene Rfer_2553 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_2553  response regulator receiver/ANTAR domain-containing protein  100 
 
 
215 aa  425  1e-118  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1415  response regulator receiver/ANTAR domain-containing protein  76.06 
 
 
210 aa  320  9.999999999999999e-87  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.609776  normal  0.778661 
 
 
-
 
NC_008786  Veis_2589  Fis family transcriptional regulator  75.81 
 
 
208 aa  317  1e-85  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0488842 
 
 
-
 
NC_008752  Aave_2149  response regulator receiver/ANTAR domain-containing protein  74.42 
 
 
208 aa  312  2.9999999999999996e-84  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_3266  response regulator receiver/ANTAR domain-containing protein  72.17 
 
 
210 aa  306  2.0000000000000002e-82  Polaromonas sp. JS666  Bacteria  normal  0.559806  normal 
 
 
-
 
NC_008782  Ajs_2830  response regulator receiver/ANTAR domain-containing protein  71.16 
 
 
206 aa  295  4e-79  Acidovorax sp. JS42  Bacteria  normal  normal  0.264074 
 
 
-
 
NC_011992  Dtpsy_2319  response regulator receiver and ANTAR domain protein  71.16 
 
 
206 aa  295  4e-79  Acidovorax ebreus TPSY  Bacteria  normal  0.781459  n/a   
 
 
-
 
NC_008825  Mpe_A1393  putative response regulator transcription regulator protein  63.68 
 
 
210 aa  277  1e-73  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.40238 
 
 
-
 
NC_003295  RSc0382  response regulator transcription regulator protein  53.11 
 
 
195 aa  188  5e-47  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.846144 
 
 
-
 
NC_012856  Rpic12D_0259  response regulator receiver and ANTAR domain protein  51.41 
 
 
212 aa  182  5.0000000000000004e-45  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0238  response regulator receiver and ANTAR domain protein  50.85 
 
 
212 aa  181  8.000000000000001e-45  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0278  response regulator receiver/ANTAR domain-containing protein  47.75 
 
 
219 aa  171  7.999999999999999e-42  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0331  response regulator receiver:ANTAR  44.5 
 
 
214 aa  169  3e-41  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0829  response regulator receiver:ANTAR  43.24 
 
 
191 aa  150  1e-35  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.018256 
 
 
-
 
NC_010086  Bmul_4144  response regulator receiver/ANTAR domain-containing protein  44.63 
 
 
201 aa  149  3e-35  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.071014 
 
 
-
 
NC_010725  Mpop_5014  response regulator receiver and ANTAR domain protein  45.25 
 
 
195 aa  147  1.0000000000000001e-34  Methylobacterium populi BJ001  Bacteria  normal  normal  0.757534 
 
 
-
 
NC_009656  PSPA7_3519  hypothetical protein  43.17 
 
 
192 aa  146  2.0000000000000003e-34  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2581  response regulator receiver/ANTAR domain-containing protein  42.31 
 
 
192 aa  145  3e-34  Pseudomonas mendocina ymp  Bacteria  normal  0.298585  hitchhiker  0.00648362 
 
 
-
 
NC_007005  Psyr_2104  response regulator receiver:ANTAR  42.02 
 
 
191 aa  145  4.0000000000000006e-34  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00575971 
 
 
-
 
NC_008463  PA14_41490  hypothetical protein  42.62 
 
 
192 aa  145  4.0000000000000006e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0588  response regulator NasT  41.4 
 
 
191 aa  145  6e-34  Methylococcus capsulatus str. Bath  Bacteria  normal  0.419145  n/a   
 
 
-
 
NC_010172  Mext_4498  ANTAR domain-containing protein  44.13 
 
 
195 aa  145  6e-34  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA1090  response regulator NasT  42.05 
 
 
198 aa  144  1e-33  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0864919  n/a   
 
 
-
 
NC_010623  Bphy_3445  response regulator receiver/ANTAR domain-containing protein  42.78 
 
 
191 aa  144  1e-33  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A0246  response regulator NasT  42.05 
 
 
198 aa  144  1e-33  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0087  response regulator/ANTAR domain-containing protein  42.05 
 
 
198 aa  144  1e-33  Burkholderia mallei SAVP1  Bacteria  normal  0.792302  n/a   
 
 
-
 
NC_008835  BMA10229_0333  response regulator NasT  42.05 
 
 
198 aa  144  1e-33  Burkholderia mallei NCTC 10229  Bacteria  normal  0.169956  n/a   
 
 
-
 
NC_009075  BURPS668_A1759  response regulator/ANTAR domain-containing protein  42.05 
 
 
198 aa  144  1e-33  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1670  response regulator/ANTAR domain-containing protein  42.05 
 
 
198 aa  144  1e-33  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1255  response regulator/ANTAR domain-containing protein  42.05 
 
 
198 aa  144  1e-33  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0422038  n/a   
 
 
-
 
NC_011757  Mchl_4961  response regulator receiver and ANTAR domain protein  44.13 
 
 
195 aa  144  1e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.044252 
 
 
-
 
NC_007492  Pfl01_1784  response regulator receiver  40.96 
 
 
191 aa  143  2e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4227  response regulator receiver and ANTAR domain protein  38.79 
 
 
194 aa  143  2e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0711042  n/a   
 
 
-
 
NC_010505  Mrad2831_2302  response regulator receiver/ANTAR domain-containing protein  42.46 
 
 
195 aa  143  2e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.874561 
 
 
-
 
NC_007778  RPB_1762  response regulator receiver/ANTAR domain-containing protein  38.32 
 
 
194 aa  142  4e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.48447  normal  0.0125916 
 
 
-
 
NC_009485  BBta_4139  response regulator receiver/ANTAR domain-containing protein  41.75 
 
 
196 aa  142  4e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.214536 
 
 
-
 
NC_004578  PSPTO_2306  response regulator NasT  41.49 
 
 
191 aa  141  6e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_23450  response regulator NasT  41.76 
 
 
192 aa  141  8e-33  Azotobacter vinelandii DJ  Bacteria  normal  0.212044  n/a   
 
 
-
 
NC_009720  Xaut_2506  response regulator receiver/ANTAR domain-containing protein  37.91 
 
 
221 aa  141  9e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  0.187461  normal 
 
 
-
 
NC_007404  Tbd_2271  response regulator receiver domain-containing protein  43.96 
 
 
188 aa  140  9.999999999999999e-33  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.187486  normal 
 
 
-
 
NC_007511  Bcep18194_B1340  response regulator receiver/ANTAR domain-containing protein  42.94 
 
 
198 aa  140  1.9999999999999998e-32  Burkholderia sp. 383  Bacteria  normal  normal  0.579049 
 
 
-
 
NC_007650  BTH_II1167  response regulator NasT  40.91 
 
 
198 aa  140  1.9999999999999998e-32  Burkholderia thailandensis E264  Bacteria  normal  0.136185  n/a   
 
 
-
 
NC_009654  Mmwyl1_2821  response regulator receiver/ANTAR domain-containing protein  39.66 
 
 
224 aa  140  1.9999999999999998e-32  Marinomonas sp. MWYL1  Bacteria  normal  0.41961  normal  0.477248 
 
 
-
 
NC_010515  Bcenmc03_5794  response regulator receiver/ANTAR domain-containing protein  42.94 
 
 
198 aa  139  3.9999999999999997e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3858  response regulator receiver/ANTAR domain-containing protein  42.94 
 
 
219 aa  139  3.9999999999999997e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.853052  n/a   
 
 
-
 
NC_008543  Bcen2424_4510  response regulator receiver/ANTAR domain-containing protein  42.94 
 
 
219 aa  139  3.9999999999999997e-32  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.000166869  normal 
 
 
-
 
NC_011369  Rleg2_1455  response regulator receiver and ANTAR domain protein  42.78 
 
 
195 aa  139  3.9999999999999997e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.770993 
 
 
-
 
NC_009620  Smed_4528  response regulator receiver/ANTAR domain-containing protein  43.08 
 
 
196 aa  139  3.9999999999999997e-32  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1211  response regulator receiver/ANTAR domain-containing protein  38.32 
 
 
194 aa  138  6e-32  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1632  response regulator receiver and ANTAR domain protein  42.27 
 
 
207 aa  137  1e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0623893 
 
 
-
 
NC_008687  Pden_4455  response regulator receiver/ANTAR domain-containing protein  40.11 
 
 
196 aa  137  1e-31  Paracoccus denitrificans PD1222  Bacteria  normal  0.269789  normal 
 
 
-
 
NC_010676  Bphyt_5673  response regulator receiver and ANTAR domain protein  41.21 
 
 
191 aa  137  2e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.598594 
 
 
-
 
NC_007802  Jann_3038  response regulator receiver/ANTAR domain-containing protein  38.32 
 
 
206 aa  136  2e-31  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3741  response regulator receiver/ANTAR domain-containing protein  40 
 
 
202 aa  136  2e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.755024  normal  0.109153 
 
 
-
 
NC_008391  Bamb_3940  response regulator receiver/ANTAR domain-containing protein  42.94 
 
 
198 aa  137  2e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.590133  normal 
 
 
-
 
NC_010552  BamMC406_4403  response regulator receiver/ANTAR domain-containing protein  42.94 
 
 
198 aa  135  3.0000000000000003e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.155669 
 
 
-
 
NC_008254  Meso_1448  response regulator receiver/ANTAR domain-containing protein  38.66 
 
 
196 aa  135  4e-31  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2871  response regulator receiver and ANTAR domain protein  39.51 
 
 
204 aa  134  8e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.372726  n/a   
 
 
-
 
NC_007952  Bxe_B1048  response regulator receiver/ANTAR domain-containing protein  41.76 
 
 
191 aa  134  9e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.192908  normal  0.77765 
 
 
-
 
NC_002947  PP_2093  response regulator receiver and ANTAR domain protein  40.11 
 
 
191 aa  134  9.999999999999999e-31  Pseudomonas putida KT2440  Bacteria  normal  0.966349  normal  0.0833699 
 
 
-
 
NC_009952  Dshi_1661  transcription antitermination regulatory protein  37.38 
 
 
194 aa  134  9.999999999999999e-31  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.00275655 
 
 
-
 
NC_009512  Pput_3647  response regulator receiver/ANTAR domain-containing protein  40.11 
 
 
191 aa  134  9.999999999999999e-31  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5900  two component response regulator  42.27 
 
 
195 aa  133  1.9999999999999998e-30  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1611  response regulator receiver/ANTAR domain-containing protein  40.11 
 
 
191 aa  133  1.9999999999999998e-30  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000000101988 
 
 
-
 
NC_010322  PputGB1_1604  response regulator receiver/ANTAR domain-containing protein  39.56 
 
 
191 aa  132  5e-30  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0284464 
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  35.36 
 
 
195 aa  127  1.0000000000000001e-28  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2529  response regulator receiver/ANTAR domain-containing protein  42.95 
 
 
212 aa  126  2.0000000000000002e-28  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1703  response regulator receiver/ANTAR domain-containing protein  38.17 
 
 
193 aa  126  3e-28  Sphingomonas wittichii RW1  Bacteria  normal  0.242071  normal 
 
 
-
 
NC_010338  Caul_2959  response regulator receiver/ANTAR domain-containing protein  39.89 
 
 
192 aa  122  3e-27  Caulobacter sp. K31  Bacteria  normal  normal  0.793007 
 
 
-
 
NC_009720  Xaut_1086  response regulator receiver/ANTAR domain-containing protein  40.13 
 
 
202 aa  121  9.999999999999999e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3317  putative response regulator NasT  33.33 
 
 
201 aa  114  1.0000000000000001e-24  Colwellia psychrerythraea 34H  Bacteria  normal  0.0234612  n/a   
 
 
-
 
NC_007794  Saro_2973  response regulator receiver/ANTAR domain-containing protein  39.13 
 
 
217 aa  114  1.0000000000000001e-24  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1132  response regulator receiver/ANTAR domain-containing protein  34.78 
 
 
194 aa  107  2e-22  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.169793  n/a   
 
 
-
 
NC_008048  Sala_1262  response regulator receiver/ANTAR domain-containing protein  36.67 
 
 
193 aa  104  8e-22  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.425993  normal 
 
 
-
 
NC_011666  Msil_3768  response regulator receiver and ANTAR domain protein  35.03 
 
 
195 aa  102  5e-21  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007520  Tcr_0769  response regulator receiver/ANTAR domain-containing protein  31.84 
 
 
214 aa  102  6e-21  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0679202  n/a   
 
 
-
 
NC_007948  Bpro_3275  response regulator receiver/ANTAR domain-containing protein  41.32 
 
 
430 aa  101  9e-21  Polaromonas sp. JS666  Bacteria  normal  0.197236  normal 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  33.91 
 
 
196 aa  99.4  3e-20  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  36.78 
 
 
198 aa  97.8  9e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  34.48 
 
 
196 aa  97.4  1e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  36.54 
 
 
194 aa  95.1  7e-19  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  33.68 
 
 
205 aa  94.4  1e-18  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  32.8 
 
 
197 aa  93.6  2e-18  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_010581  Bind_1968  response regulator receiver/ANTAR domain-containing protein  36.99 
 
 
193 aa  92  6e-18  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  33.67 
 
 
204 aa  91.7  8e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  32.95 
 
 
229 aa  89.7  3e-17  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  33.33 
 
 
206 aa  89.4  4e-17  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_008825  Mpe_A2314  response regulator  27.65 
 
 
426 aa  87.4  1e-16  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  30.81 
 
 
220 aa  86.3  3e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  32.37 
 
 
226 aa  86.3  4e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  30.81 
 
 
227 aa  85.9  4e-16  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_008578  Acel_1081  response regulator receiver/ANTAR domain-containing protein  32.28 
 
 
247 aa  84.7  8e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  32.95 
 
 
207 aa  84.3  0.000000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  31.9 
 
 
210 aa  84  0.000000000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  31.9 
 
 
210 aa  84  0.000000000000002  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  31.9 
 
 
210 aa  84  0.000000000000002  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  33.14 
 
 
189 aa  84  0.000000000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  34.23 
 
 
200 aa  82.8  0.000000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  38.36 
 
 
198 aa  83.2  0.000000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  31.58 
 
 
194 aa  82.8  0.000000000000004  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
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