More than 300 homologs were found in PanDaTox collection
for query gene Namu_1043 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013235  Namu_1043  transcriptional regulator, GntR family with aminotransferase domain  100 
 
 
486 aa  940    Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1854  GntR family transcriptional regulator  46.86 
 
 
478 aa  359  5e-98  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1901  GntR family transcriptional regulator  46.86 
 
 
478 aa  359  5e-98  Mycobacterium sp. KMS  Bacteria  normal  0.775747  normal 
 
 
-
 
NC_009077  Mjls_1835  GntR family transcriptional regulator  46.65 
 
 
478 aa  356  5e-97  Mycobacterium sp. JLS  Bacteria  normal  0.422733  normal 
 
 
-
 
NC_013093  Amir_6790  transcriptional regulator, GntR family with aminotransferase domain  44.79 
 
 
487 aa  348  1e-94  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0748  transcriptional regulator, GntR family with aminotransferase domain  44.33 
 
 
493 aa  347  3e-94  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_014151  Cfla_2093  transcriptional regulator, GntR family with aminotransferase domain  45.29 
 
 
503 aa  339  5e-92  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.619312  normal 
 
 
-
 
NC_009436  Ent638_0925  GntR family transcriptional regulator  42.8 
 
 
485 aa  337  2.9999999999999997e-91  Enterobacter sp. 638  Bacteria  normal  0.447964  normal 
 
 
-
 
NC_013510  Tcur_2248  transcriptional regulator, GntR family with aminotransferase domain  47.38 
 
 
486 aa  334  3e-90  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.0000288373  n/a   
 
 
-
 
NC_014210  Ndas_1408  transcriptional regulator, GntR family with aminotransferase domain  46.04 
 
 
488 aa  323  5e-87  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.682802 
 
 
-
 
NC_008541  Arth_0620  GntR family transcriptional regulator  45.05 
 
 
496 aa  323  5e-87  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3373  GntR family transcriptional regulator  43.4 
 
 
478 aa  321  1.9999999999999998e-86  Nocardioides sp. JS614  Bacteria  normal  0.576212  n/a   
 
 
-
 
NC_009664  Krad_4144  putative transcriptional regulator, GntR family  47.36 
 
 
472 aa  317  2e-85  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.805557 
 
 
-
 
NC_009338  Mflv_4275  GntR family transcriptional regulator  42.16 
 
 
480 aa  316  7e-85  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.310254  normal  0.794822 
 
 
-
 
NC_008825  Mpe_A2441  GntR family transcriptional regulator  41.42 
 
 
449 aa  315  9.999999999999999e-85  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2084  GntR family transcriptional regulator  43.3 
 
 
504 aa  311  2e-83  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.87186  normal 
 
 
-
 
NC_014158  Tpau_3344  transcriptional regulator, GntR family with aminotransferase domain  44.54 
 
 
482 aa  299  6e-80  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.416348  n/a   
 
 
-
 
NC_013595  Sros_5956  putative transcriptional regulator, GntR family  44.97 
 
 
486 aa  299  9e-80  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0993453  normal  0.072408 
 
 
-
 
NC_013947  Snas_2700  transcriptional regulator, GntR family with aminotransferase domain-containing protein  41.9 
 
 
475 aa  297  3e-79  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0691632 
 
 
-
 
NC_009380  Strop_3184  regulatory protein GntR, HTH  42.32 
 
 
485 aa  296  8e-79  Salinispora tropica CNB-440  Bacteria  normal  normal  0.499034 
 
 
-
 
NC_009953  Sare_3410  transcriptional regulator  42.76 
 
 
485 aa  294  2e-78  Salinispora arenicola CNS-205  Bacteria  normal  0.723571  decreased coverage  0.0095682 
 
 
-
 
NC_013235  Namu_3402  transcriptional regulator, GntR family with aminotransferase domain  43.46 
 
 
515 aa  283  3.0000000000000004e-75  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000368024  hitchhiker  0.000012724 
 
 
-
 
NC_013131  Caci_2369  transcriptional regulator, GntR family with aminotransferase domain  41.81 
 
 
505 aa  271  2.9999999999999997e-71  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3924  transcriptional regulator, GntR family with aminotransferase domain  41.54 
 
 
468 aa  267  2.9999999999999995e-70  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0615  transcriptional regulator, GntR family with aminotransferase domain  35.73 
 
 
491 aa  227  3e-58  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.736452  normal 
 
 
-
 
NC_013595  Sros_2586  putative transcriptional regulator, GntR family  38.27 
 
 
478 aa  218  1e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0905182 
 
 
-
 
NC_013947  Snas_4172  transcriptional regulator, GntR family with aminotransferase domain-containing protein  36.81 
 
 
488 aa  216  7e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.03897  normal  0.666696 
 
 
-
 
NC_013595  Sros_5610  putative transcriptional regulator, GntR family  35.78 
 
 
468 aa  191  4e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.461121  normal  0.257842 
 
 
-
 
NC_013739  Cwoe_1217  transcriptional regulator, GntR family with aminotransferase domain  35.71 
 
 
466 aa  178  2e-43  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.217148 
 
 
-
 
NC_013131  Caci_6330  putative transcriptional regulator, GntR family  38.08 
 
 
437 aa  166  1.0000000000000001e-39  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00057428  hitchhiker  0.00168096 
 
 
-
 
NC_014213  Mesil_3297  hypothetical protein  32.36 
 
 
493 aa  155  1e-36  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0920316 
 
 
-
 
NC_013946  Mrub_0775  GntR family transcriptional regulator with aminotransferase domain  30.33 
 
 
484 aa  148  2.0000000000000003e-34  Meiothermus ruber DSM 1279  Bacteria  normal  0.835406  normal  0.904358 
 
 
-
 
NC_009253  Dred_2905  GntR family transcriptional regulator  30.46 
 
 
340 aa  143  7e-33  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3364  transcriptional regulator  29.84 
 
 
498 aa  143  7e-33  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5490  putative transcriptional regulator, GntR family  36.53 
 
 
377 aa  140  3.9999999999999997e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  0.110442  n/a   
 
 
-
 
NC_012793  GWCH70_1451  transcriptional regulator, GntR family with aminotransferase domain  25.83 
 
 
490 aa  139  1e-31  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A3058  transcriptional regulator, GntR family  28.33 
 
 
480 aa  139  1e-31  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_3093  GntR family transcriptional regulator  28.33 
 
 
480 aa  138  2e-31  Bacillus cereus ATCC 10987  Bacteria  normal  0.0883302  n/a   
 
 
-
 
NC_005945  BAS2847  GntR family transcriptional regulator  28.33 
 
 
480 aa  138  2e-31  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2188  transcriptional regulator, GntR family/aminotransferase, class I protein  28.87 
 
 
483 aa  138  2e-31  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0027297 
 
 
-
 
NC_007530  GBAA_3062  GntR family transcriptional regulator  28.33 
 
 
480 aa  138  2e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3074  transcriptional regulator, GntR family/aminotransferase, class I protein  28.33 
 
 
480 aa  138  3.0000000000000003e-31  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK2781  GntR family transcriptional regulator  28.33 
 
 
480 aa  137  5e-31  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1857  transcriptional regulator, GntR family with aminotransferase domain  25.72 
 
 
468 aa  137  5e-31  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2096  GntR family transcriptional regulator  28.9 
 
 
471 aa  137  6.0000000000000005e-31  Marinobacter aquaeolei VT8  Bacteria  normal  0.698776  n/a   
 
 
-
 
NC_011658  BCAH187_A2087  transcription regulator, GntR family  25.52 
 
 
480 aa  137  6.0000000000000005e-31  Bacillus cereus AH187  Bacteria  hitchhiker  0.00000314762  n/a   
 
 
-
 
NC_011658  BCAH187_A3091  transcriptional regulator, GntR family/aminotransferase, class I protein  28.11 
 
 
480 aa  136  7.000000000000001e-31  Bacillus cereus AH187  Bacteria  hitchhiker  0.0045104  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2841  transcriptional regulator  28.91 
 
 
480 aa  136  9e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.171165  n/a   
 
 
-
 
NC_011769  DvMF_3003  putative transcriptional regulator, GntR family  32.51 
 
 
394 aa  136  9e-31  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_2820  GntR family transcriptional regulator  28.33 
 
 
480 aa  135  9.999999999999999e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3767  transcriptional regulator, GntR family/aminotransferase, class I protein  27.42 
 
 
477 aa  136  9.999999999999999e-31  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000429089 
 
 
-
 
NC_011772  BCG9842_B1442  transcriptional regulator, GntR family/aminotransferase, class I protein  27.42 
 
 
477 aa  135  1.9999999999999998e-30  Bacillus cereus G9842  Bacteria  normal  0.057405  hitchhiker  0.00000201635 
 
 
-
 
NC_003909  BCE_3789  GntR family transcriptional regulator  27.49 
 
 
477 aa  135  1.9999999999999998e-30  Bacillus cereus ATCC 10987  Bacteria  normal  0.0162684  n/a   
 
 
-
 
NC_011658  BCAH187_A3799  transcriptional regulator, GntR family/aminotransferase, class I protein  27.42 
 
 
477 aa  135  1.9999999999999998e-30  Bacillus cereus AH187  Bacteria  hitchhiker  0.00124231  n/a   
 
 
-
 
NC_005945  BAS3600  GntR family transcriptional regulator  27.42 
 
 
477 aa  135  1.9999999999999998e-30  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2175  GntR family transcriptional regulator  22.8 
 
 
477 aa  135  1.9999999999999998e-30  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_3886  GntR family transcriptional regulator  27.42 
 
 
477 aa  135  1.9999999999999998e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3499  transcriptional regulator  27.42 
 
 
477 aa  134  3e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0033434  n/a   
 
 
-
 
NC_006274  BCZK1804  GntR family transcriptional regulator  25.15 
 
 
481 aa  134  3e-30  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1240  transcriptional regulator  28.45 
 
 
478 aa  134  3e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A3856  transcriptional regulator, GntR family/aminotransferase, class I protein  27.42 
 
 
477 aa  134  3e-30  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3511  GntR family transcriptional regulator  27.42 
 
 
477 aa  134  3.9999999999999996e-30  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1524  transcriptional regulator, GntR family with aminotransferase domain protein  30.06 
 
 
483 aa  134  3.9999999999999996e-30  Pectobacterium wasabiae WPP163  Bacteria  normal  0.790712  n/a   
 
 
-
 
NC_013517  Sterm_0115  putative transcriptional regulator, GntR family  28.97 
 
 
396 aa  134  3.9999999999999996e-30  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1853  transcriptional regulator  23.67 
 
 
480 aa  134  3.9999999999999996e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.406204  n/a   
 
 
-
 
NC_007777  Francci3_2807  aminotransferase, class I and II  38.8 
 
 
400 aa  133  7.999999999999999e-30  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_2044  GntR family transcriptional regulator  27.35 
 
 
480 aa  132  1.0000000000000001e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.439116  n/a   
 
 
-
 
NC_007406  Nwi_0881  GntR family transcriptional regulator  32.53 
 
 
478 aa  131  2.0000000000000002e-29  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.426216  normal 
 
 
-
 
NC_013235  Namu_3369  putative transcriptional regulator, GntR family  36.33 
 
 
402 aa  132  2.0000000000000002e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0184281  normal  0.0139033 
 
 
-
 
NC_008686  Pden_1434  GntR family transcriptional regulator  34.09 
 
 
480 aa  132  2.0000000000000002e-29  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.515471 
 
 
-
 
NC_009832  Spro_3347  transcriptional regulator  28.79 
 
 
500 aa  131  2.0000000000000002e-29  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_2616  putative transcriptional regulator, GntR family  28.28 
 
 
395 aa  131  3e-29  Brachyspira murdochii DSM 12563  Bacteria  normal  0.791152  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3526  transcriptional regulator  27.01 
 
 
477 aa  131  3e-29  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6904  transcriptional regulator  28.34 
 
 
483 aa  130  4.0000000000000003e-29  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0439  transcriptional regulator, GntR family with aminotransferase domain protein  30.26 
 
 
517 aa  130  4.0000000000000003e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1833  GntR family transcriptional regulator  30.46 
 
 
452 aa  130  6e-29  Shewanella sp. MR-7  Bacteria  normal  0.218388  normal 
 
 
-
 
NC_007519  Dde_0621  GntR family transcriptional regulator  28.29 
 
 
547 aa  130  7.000000000000001e-29  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_5787  transcriptional regulator, GntR family with aminotransferase domain  28.08 
 
 
483 aa  129  1.0000000000000001e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0708  transcriptional regulator  29.91 
 
 
400 aa  129  1.0000000000000001e-28  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.471024  normal  0.529403 
 
 
-
 
NC_008321  Shewmr4_1753  GntR family transcriptional regulator  30.22 
 
 
452 aa  128  2.0000000000000002e-28  Shewanella sp. MR-4  Bacteria  normal  0.719821  normal 
 
 
-
 
NC_011725  BCB4264_A1992  transcriptional regulator, GntR family  24.15 
 
 
480 aa  128  2.0000000000000002e-28  Bacillus cereus B4264  Bacteria  normal  0.0394003  n/a   
 
 
-
 
NC_011772  BCG9842_B2543  transcriptional regulator, GntR family  30.02 
 
 
477 aa  129  2.0000000000000002e-28  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000000100804 
 
 
-
 
NC_011772  BCG9842_B3337  transcriptional regulator, GntR family  24.3 
 
 
480 aa  128  3e-28  Bacillus cereus G9842  Bacteria  normal  0.157491  hitchhiker  0.0000000000000475852 
 
 
-
 
NC_013457  VEA_000386  transcriptional regulator GntR family  24.89 
 
 
471 aa  127  3e-28  Vibrio sp. Ex25  Bacteria  normal  0.882947  n/a   
 
 
-
 
NC_013174  Jden_2549  putative transcriptional regulator, GntR family  30.98 
 
 
436 aa  127  3e-28  Jonesia denitrificans DSM 20603  Bacteria  normal  0.49034  normal  0.185545 
 
 
-
 
NC_007963  Csal_1101  GntR family transcriptional regulator  33.16 
 
 
464 aa  128  3e-28  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_39710  transcriptional regulator with HTH domain protein and aminotransferase domain protein  31.38 
 
 
446 aa  128  3e-28  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2328  aminotransferase, class I and II  29.09 
 
 
433 aa  127  4.0000000000000003e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0573  GntR family transcriptional regulator  33.85 
 
 
470 aa  127  4.0000000000000003e-28  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2744  transcriptional regulator, GntR family with aminotransferase domain  29.5 
 
 
483 aa  127  6e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2749  transcriptional regulator, GntR family  29.78 
 
 
477 aa  127  6e-28  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2266  GntR family transcriptional regulator  30.46 
 
 
460 aa  126  7e-28  Shewanella sp. ANA-3  Bacteria  normal  normal  0.99423 
 
 
-
 
NC_007493  RSP_1922  GntR family transcriptional regulator  33.93 
 
 
470 aa  126  8.000000000000001e-28  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.664628  n/a   
 
 
-
 
NC_013172  Bfae_09460  transcriptional regulator with HTH domain and aminotransferase domain  33.12 
 
 
404 aa  126  9e-28  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2117  GntR family transcriptional regulator  33.33 
 
 
398 aa  126  1e-27  Burkholderia phymatum STM815  Bacteria  normal  0.483945  normal  0.104969 
 
 
-
 
NC_003909  BCE_2769  GntR family transcriptional regulator  29.41 
 
 
477 aa  125  1e-27  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.0000296805  n/a   
 
 
-
 
NC_013456  VEA_003147  GntR-family regulatory protein  26.89 
 
 
468 aa  125  1e-27  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00323958  n/a   
 
 
-
 
NC_009513  Lreu_1902  aromatic amino acid aminotransferase / 2-aminoadipate aminotransferase  31.1 
 
 
397 aa  126  1e-27  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1213  putative transcriptional regulator, GntR family  33.64 
 
 
398 aa  125  2e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_5087  putative transcriptional regulator, GntR family  32.89 
 
 
454 aa  125  2e-27  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
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