| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3373 |
|---|
| Symbol | |
|---|
| ID | 4598771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 3573131 |
|---|
| End bp | 3574567 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 639777980 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_924561 |
|---|
| Protein GI | 119717596 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.576212 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCA CCGTGAGCGC CGGCCGGGTG GCCGCCCTGG TCGGCGACTT CGACCGCTCC
CCCGCCTACG CCGGCCTCGC CGACGCCCTG GTCCTGCTGA TCGGCGACGG CCGGATCGCG
CTGGACACCC GGCTGCCGAG CGAGCGGGAG CTGACCGAGG CGCTCGGGCT CTCGCGCACC
ACCGTGACCC GGGCGTACAC CGCGCTGCGG GAGGCGGGGT ACGCCGAGGC GCGACGCGGC
TCGGGCACGT TCACGCGGGT GCCGGGCGGG CCGGCGCGCG CACACGACCG GGCCCTGCTG
CCGCGGCCCG GCGACGACGA GGCGATCGAC CTGAACTGCG CGGCGCCGTC CGCCCCGGCG
GGCCTGGCGA AGGCGTACGC CGAGGCCGCG GCCGAGCTGC CGGCGTACCT CGGCGGCCAC
GGCTACTTCC CCGCCGGGCT CCCCCAGCTC CAGCAGGCGA TCGCGGCGAC GTACGAGGCG
CGCGGCCTGC CGACCGCGCC CGACCAGATC ATGGTCACGC CCGGCGCGCT GTCGGCGGCG
TCGATCGTGG CGCAGGCGTT CACCTCGCCC GGCGACCGGG TGCTGGTGGA GTCGCCGGTG
TACCCGAACG CGATCGACGC GCTGCGGCAC GGCGGCGCCC GCCTCACGCC GGTGCCGGTC
GACCCCGAGG GCTGGGACCT CCCCGCCGTC GGCGCCGCGC TGCGGCAGAC GGCACCGCGG
CTGGCCTACC TGATCGCGGA CTTCCAGAAC CCCACCGGCC ACCTGATGAC CGAGGCGCAG
CGCGAGGAGT ACGCCGGCCA CCTGCGCCGG GCGCACACCA CCGCGATCGT CGACGAGGCC
CACCAGTGGC TCCCGCTCGA GGGCCAGGAC ATGCCGCGCC CGTTCGCGGC GTACGCCCCC
GACACGATCA CGATCGGCAG CGCCAGCAAG GGCTTCTGGG GCGGCCTGCG GCTGGGCTGG
ATGCGGGTCC CACCCGGCCG GATGGACCGG CTCACCCAGG CCCGGGTGAG CATGGACCTC
GGCGCCCCGG TGATGGAGCA ACTGGTGCTG GTCCGGCTGC TCGCCGAGGC CGACGAGGTG
CTCGCCGCGA ACCGGGCGCG GCTCCGTGCC CAGCGCGACG CGCTGGTCGC GGCGGTGCGT
GCGCAGCTCC CCGAGTGGAC GTTCCGCGTG CCGTCCGGCG GGTTGGCGCT GTGGTGCCGG
CTCCCCGCCG CCTCGGGCTC GGCGGTCGCG GCCGAGGCCG AACGCCTGGG CGTCATCATC
CCGCCCGGCC CGGTCTTCGC CGTCGAGGGC GGTCTCGACC GGTTCGTGCG GATCCCGTGG
ACGCGGCCGG CCGAGGACCT CGTCGACGGT GTCGCCCGGC TGGCCGAGGC CTGGGCCGTG
GTGCGCGAGC GGCCGGCGTC CGGGCCGGGT GTGTCCGGGC GGGTGATGGT GGCCTGA
|
|---|
| Protein sequence | MNRTVSAGRV AALVGDFDRS PAYAGLADAL VLLIGDGRIA LDTRLPSERE LTEALGLSRT
TVTRAYTALR EAGYAEARRG SGTFTRVPGG PARAHDRALL PRPGDDEAID LNCAAPSAPA
GLAKAYAEAA AELPAYLGGH GYFPAGLPQL QQAIAATYEA RGLPTAPDQI MVTPGALSAA
SIVAQAFTSP GDRVLVESPV YPNAIDALRH GGARLTPVPV DPEGWDLPAV GAALRQTAPR
LAYLIADFQN PTGHLMTEAQ REEYAGHLRR AHTTAIVDEA HQWLPLEGQD MPRPFAAYAP
DTITIGSASK GFWGGLRLGW MRVPPGRMDR LTQARVSMDL GAPVMEQLVL VRLLAEADEV
LAANRARLRA QRDALVAAVR AQLPEWTFRV PSGGLALWCR LPAASGSAVA AEAERLGVII
PPGPVFAVEG GLDRFVRIPW TRPAEDLVDG VARLAEAWAV VRERPASGPG VSGRVMVA
|
|---|
| |